Wall clock time and date at job start Fri Apr 10 2020 20:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46933 * 2 1 4 4 S 1.81409 * 109.46824 * 240.00288 * 2 1 3 5 5 C 1.76192 * 103.00100 * 66.82641 * 4 2 1 6 6 C 1.39077 * 119.70834 * 235.35833 * 5 4 2 7 7 C 1.38364 * 119.10823 * 180.02562 * 6 5 4 8 8 C 1.38837 * 118.52660 * 359.97252 * 7 6 5 9 9 C 1.38109 * 119.33311 * 0.02562 * 8 7 6 10 10 N 1.32005 * 120.84378 * 359.97438 * 9 8 7 11 11 O 1.41590 * 119.19750 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47295 * 120.00532 * 2 1 3 13 13 O 1.21274 * 119.99960 * 99.99356 * 12 2 1 14 14 N 1.34774 * 119.99501 * 280.00130 * 12 2 1 15 15 C 1.46503 * 120.00376 * 359.97438 * 14 12 2 16 16 C 1.46503 * 119.99759 * 179.97438 * 14 12 2 17 17 C 1.50705 * 109.47023 * 89.99953 * 16 14 12 18 18 H 1.07997 * 119.99898 * 359.97438 * 17 16 14 19 19 C 1.37875 * 119.99697 * 180.02562 * 17 16 14 20 20 N 1.31510 * 120.00220 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99735 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46945 * 89.99787 * 21 19 17 23 23 H 1.48492 * 109.47145 * 209.99898 * 21 19 17 24 24 H 1.48502 * 109.47009 * 330.00080 * 21 19 17 25 25 H 1.08997 * 109.47226 * 64.87219 * 1 2 3 26 26 H 1.08999 * 109.47121 * 184.87118 * 1 2 3 27 27 H 1.08995 * 109.47121 * 304.87330 * 1 2 3 28 28 H 1.07994 * 120.44228 * 0.02562 * 6 5 4 29 29 H 1.08004 * 120.73666 * 179.97438 * 7 6 5 30 30 H 1.07996 * 120.33617 * 180.27684 * 8 7 6 31 31 H 1.07997 * 119.58009 * 180.02562 * 9 8 7 32 32 H 1.08994 * 109.47350 * 90.00052 * 15 14 12 33 33 H 1.09003 * 109.47067 * 210.00591 * 15 14 12 34 34 H 1.09003 * 109.46432 * 329.99910 * 15 14 12 35 35 H 1.09004 * 109.47293 * 209.99691 * 16 14 12 36 36 H 1.08993 * 109.47085 * 329.99924 * 16 14 12 37 37 H 0.97000 * 119.99766 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1346 -0.8551 -1.4813 5 6 1.6298 0.2123 -2.7890 6 6 0.8512 -0.2893 -3.8265 7 6 0.4622 0.5598 -4.8473 8 6 0.8659 1.8872 -4.7958 9 6 1.6387 2.3186 -3.7356 10 7 1.9953 1.4862 -2.7752 11 8 2.7876 1.9659 -1.7042 12 6 2.0324 -0.7105 1.2304 13 8 2.4064 -1.8617 1.1556 14 7 2.0659 -0.0665 2.4138 15 6 1.6145 1.3243 2.5041 16 6 2.5537 -0.7574 3.6101 17 6 4.0405 -0.5478 3.7400 18 1 4.5691 0.0407 3.0048 19 6 4.7259 -1.1083 4.7969 20 7 4.0824 -1.8262 5.6913 21 14 6.5689 -0.8492 4.9575 22 1 6.8288 0.3730 5.7599 23 1 7.1768 -2.0235 5.6331 24 1 7.1660 -0.6910 3.6071 25 1 -0.3633 0.4364 -0.9304 26 1 -0.3633 -1.0239 0.0873 27 1 -0.3633 0.5876 0.8431 28 1 0.5542 -1.3276 -3.8352 29 1 -0.1422 0.1981 -5.6661 30 1 0.5752 2.5764 -5.5748 31 1 1.9547 3.3504 -3.6913 32 1 0.5482 1.3464 2.7292 33 1 2.1636 1.8339 3.2958 34 1 1.7959 1.8274 1.5543 35 1 2.0520 -0.3568 4.4910 36 1 2.3431 -1.8234 3.5253 37 1 4.5646 -2.2202 6.4350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052422607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:21:12 Heat of formation + Delta-G solvation = 37.787092 kcal Electronic energy + Delta-G solvation = -21499.167833 eV Core-core repulsion = 18178.688258 eV Total energy + Delta-G solvation = -3320.479575 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.098 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.30827 -39.06043 -34.91299 -34.82265 -33.22181 -32.28808 -31.98192 -29.96231 -27.74357 -25.90987 -24.81778 -24.47926 -24.23185 -22.33011 -19.20278 -18.34799 -17.54154 -16.99663 -16.62423 -16.33112 -15.96922 -15.51269 -15.19422 -14.95928 -14.59634 -14.31569 -13.86221 -13.35050 -13.07317 -12.74229 -12.35862 -12.19429 -11.97893 -11.88605 -11.73455 -11.58219 -11.49114 -11.14453 -10.83197 -10.68030 -10.52477 -10.09595 -9.78923 -9.56910 -9.40049 -8.94181 -8.68993 -8.37711 -7.71051 -7.61042 -5.98853 -4.02965 0.04862 0.32738 1.25225 2.10424 2.50181 2.84542 3.36309 3.37902 3.42843 3.50794 3.94836 4.08992 4.19817 4.25310 4.36568 4.51419 4.89539 4.94744 5.05534 5.24213 5.32123 5.35921 5.40125 5.51057 5.53686 5.68163 5.87869 5.98976 6.04817 6.33866 6.41595 6.83160 7.04258 7.45208 7.55028 7.97908 8.28233 8.37159 8.90956 9.07058 9.61998 11.09348 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.026498 B = 0.003842 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.436545 B = 7286.197976 C = 7493.663748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.124 4.124 3 H 0.142 0.858 4 S 0.028 5.972 5 C 0.052 3.948 6 C -0.087 4.087 7 C -0.080 4.080 8 C -0.122 4.122 9 C 0.073 3.927 10 N -0.114 5.114 11 O -0.523 6.523 12 C 0.530 3.470 13 O -0.530 6.530 14 N -0.591 5.591 15 C 0.078 3.922 16 C 0.246 3.754 17 C -0.526 4.526 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.896 5.896 21 Si 0.898 3.102 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.273 1.273 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.169 0.831 29 H 0.156 0.844 30 H 0.162 0.838 31 H 0.181 0.819 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.035 0.965 36 H 0.045 0.955 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.370 7.607 -22.855 27.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.256 4.256 3 H 0.159 0.841 4 S 0.266 5.734 5 C -0.184 4.184 6 C -0.111 4.111 7 C -0.107 4.107 8 C -0.143 4.143 9 C -0.075 4.075 10 N 0.204 4.796 11 O -0.580 6.580 12 C 0.314 3.686 13 O -0.408 6.408 14 N -0.322 5.322 15 C -0.066 4.066 16 C 0.127 3.873 17 C -0.565 4.565 18 H 0.077 0.923 19 C -0.140 4.140 20 N -0.536 5.536 21 Si 0.726 3.274 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.197 1.197 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.186 0.814 29 H 0.173 0.827 30 H 0.180 0.820 31 H 0.198 0.802 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.278 5.976 -22.307 26.155 hybrid contribution 0.575 1.728 0.289 1.844 sum -11.703 7.704 -22.019 26.099 Atomic orbital electron populations 1.21927 0.91247 1.03696 1.02328 1.24012 1.00137 1.06744 0.94682 0.84087 1.86112 1.74195 1.19903 0.93161 1.24185 1.01421 0.88775 1.04062 1.21939 0.94439 1.02443 0.92283 1.21810 0.97688 0.93049 0.98135 1.21846 0.97225 0.97254 0.97989 1.22703 0.97473 0.98834 0.88490 1.43949 1.17740 1.04512 1.13349 1.97643 1.52260 1.82379 1.25708 1.19272 0.79294 0.86640 0.83418 1.90689 1.48304 1.17187 1.84577 1.48030 1.61967 1.12611 1.09614 1.21769 0.98639 0.83476 1.02704 1.19353 0.94348 0.93684 0.79877 1.21467 0.93023 1.32563 1.09446 0.92271 1.24923 0.98713 0.94851 0.95561 1.69933 1.36124 1.33992 1.13509 0.86484 0.85059 0.77569 0.78310 1.20622 1.21075 1.19745 0.92680 0.90759 0.90740 0.81371 0.82674 0.82008 0.80158 0.93583 0.90434 0.91948 0.94723 0.93663 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 9.05 37.16 0.34 -1.49 16 2 C -0.12 -2.25 2.18 -27.88 -0.06 -2.31 16 3 H 0.14 2.73 4.15 -51.93 -0.22 2.52 16 4 S 0.03 0.48 19.83 -107.50 -2.13 -1.65 16 5 C 0.05 0.67 5.94 -16.94 -0.10 0.57 16 6 C -0.09 -0.67 9.84 -39.22 -0.39 -1.06 16 7 C -0.08 -0.36 10.17 -39.31 -0.40 -0.76 16 8 C -0.12 -0.57 10.11 -39.41 -0.40 -0.97 16 9 C 0.07 0.66 10.69 -17.52 -0.19 0.47 16 10 N -0.11 -1.63 3.60 -12.09 -0.04 -1.67 16 11 O -0.52 -10.78 16.98 -11.46 -0.19 -10.98 16 12 C 0.53 12.14 6.85 -10.99 -0.08 12.07 16 13 O -0.53 -14.14 15.62 5.56 0.09 -14.05 16 14 N -0.59 -13.61 2.86 -182.95 -0.52 -14.13 16 15 C 0.08 1.40 9.56 59.85 0.57 1.98 16 16 C 0.25 6.75 5.16 -5.19 -0.03 6.73 16 17 C -0.53 -15.76 9.39 -34.44 -0.32 -16.09 16 18 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 19 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 20 N -0.90 -27.42 13.29 55.43 0.74 -26.69 16 21 Si 0.90 22.94 29.54 -169.99 -5.02 17.92 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 25 H 0.05 0.64 7.55 -51.93 -0.39 0.25 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.07 0.95 6.99 -51.93 -0.36 0.59 16 28 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 29 H 0.16 0.12 8.06 -52.48 -0.42 -0.30 16 30 H 0.16 0.12 8.06 -52.49 -0.42 -0.30 16 31 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.05 0.69 7.69 -51.93 -0.40 0.29 16 33 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 34 H 0.06 1.05 5.94 -51.93 -0.31 0.74 16 35 H 0.03 0.94 8.07 -51.93 -0.42 0.53 16 36 H 0.05 1.37 7.42 -51.93 -0.39 0.99 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 329.81 15.07 4.97 4.97 Total: -1.00 -40.66 329.81 -7.83 -48.49 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -4.56 Total: -3.07 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -1.15 Total: 0.86 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.17 Total: -42.49 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.11 Total: -25.03 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Atomic # 16 Polarization: 0.48 SS G_CDS: -2.13 Total: -1.65 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -40.66 -7.83 -48.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052422607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.278 kcal (2) G-P(sol) polarization free energy of solvation -40.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds