Wall clock time and date at job start Fri Apr 10 2020 20:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46933 * 2 1 4 4 S 1.81409 * 109.46824 * 240.00288 * 2 1 3 5 5 C 1.76192 * 103.00100 * 66.82641 * 4 2 1 6 6 C 1.39077 * 119.70834 * 235.35833 * 5 4 2 7 7 C 1.38364 * 119.10823 * 180.02562 * 6 5 4 8 8 C 1.38837 * 118.52660 * 359.97252 * 7 6 5 9 9 C 1.38109 * 119.33311 * 0.02562 * 8 7 6 10 10 N 1.32005 * 120.84378 * 359.97438 * 9 8 7 11 11 O 1.41590 * 119.19750 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47295 * 120.00532 * 2 1 3 13 13 O 1.21274 * 119.99960 * 99.99356 * 12 2 1 14 14 N 1.34774 * 119.99501 * 280.00130 * 12 2 1 15 15 C 1.46503 * 120.00376 * 359.97438 * 14 12 2 16 16 C 1.46503 * 119.99759 * 179.97438 * 14 12 2 17 17 C 1.50705 * 109.47023 * 89.99953 * 16 14 12 18 18 H 1.07997 * 119.99898 * 359.97438 * 17 16 14 19 19 C 1.37875 * 119.99697 * 180.02562 * 17 16 14 20 20 N 1.31510 * 120.00220 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99735 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46945 * 89.99787 * 21 19 17 23 23 H 1.48492 * 109.47145 * 209.99898 * 21 19 17 24 24 H 1.48502 * 109.47009 * 330.00080 * 21 19 17 25 25 H 1.08997 * 109.47226 * 64.87219 * 1 2 3 26 26 H 1.08999 * 109.47121 * 184.87118 * 1 2 3 27 27 H 1.08995 * 109.47121 * 304.87330 * 1 2 3 28 28 H 1.07994 * 120.44228 * 0.02562 * 6 5 4 29 29 H 1.08004 * 120.73666 * 179.97438 * 7 6 5 30 30 H 1.07996 * 120.33617 * 180.27684 * 8 7 6 31 31 H 1.07997 * 119.58009 * 180.02562 * 9 8 7 32 32 H 1.08994 * 109.47350 * 90.00052 * 15 14 12 33 33 H 1.09003 * 109.47067 * 210.00591 * 15 14 12 34 34 H 1.09003 * 109.46432 * 329.99910 * 15 14 12 35 35 H 1.09004 * 109.47293 * 209.99691 * 16 14 12 36 36 H 1.08993 * 109.47085 * 329.99924 * 16 14 12 37 37 H 0.97000 * 119.99766 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1346 -0.8551 -1.4813 5 6 1.6298 0.2123 -2.7890 6 6 0.8512 -0.2893 -3.8265 7 6 0.4622 0.5598 -4.8473 8 6 0.8659 1.8872 -4.7958 9 6 1.6387 2.3186 -3.7356 10 7 1.9953 1.4862 -2.7752 11 8 2.7876 1.9659 -1.7042 12 6 2.0324 -0.7105 1.2304 13 8 2.4064 -1.8617 1.1556 14 7 2.0659 -0.0665 2.4138 15 6 1.6145 1.3243 2.5041 16 6 2.5537 -0.7574 3.6101 17 6 4.0405 -0.5478 3.7400 18 1 4.5691 0.0407 3.0048 19 6 4.7259 -1.1083 4.7969 20 7 4.0824 -1.8262 5.6913 21 14 6.5689 -0.8492 4.9575 22 1 6.8288 0.3730 5.7599 23 1 7.1768 -2.0235 5.6331 24 1 7.1660 -0.6910 3.6071 25 1 -0.3633 0.4364 -0.9304 26 1 -0.3633 -1.0239 0.0873 27 1 -0.3633 0.5876 0.8431 28 1 0.5542 -1.3276 -3.8352 29 1 -0.1422 0.1981 -5.6661 30 1 0.5752 2.5764 -5.5748 31 1 1.9547 3.3504 -3.6913 32 1 0.5482 1.3464 2.7292 33 1 2.1636 1.8339 3.2958 34 1 1.7959 1.8274 1.5543 35 1 2.0520 -0.3568 4.4910 36 1 2.3431 -1.8234 3.5253 37 1 4.5646 -2.2202 6.4350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052422607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:21:12 Heat of formation + Delta-G solvation = 7.639932 kcal Electronic energy + Delta-G solvation = -21500.475112 eV Core-core repulsion = 18178.688258 eV Total energy + Delta-G solvation = -3321.786854 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.098 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.05354 -40.87345 -36.75707 -35.63827 -35.05887 -33.97829 -32.78371 -31.00247 -29.80458 -27.58279 -26.13940 -25.46871 -24.99593 -24.20418 -20.56263 -19.56093 -18.78945 -18.31383 -18.22266 -17.81828 -17.13834 -16.67609 -16.44059 -16.24861 -15.83159 -15.70494 -15.24785 -14.73842 -14.65953 -14.16091 -13.73354 -13.56492 -13.45433 -13.20332 -13.17340 -12.88781 -12.83330 -12.67522 -12.57631 -12.27647 -12.16182 -11.79882 -11.63725 -10.86342 -10.73819 -10.68175 -10.53607 -9.89513 -9.57822 -8.91468 -8.28437 -6.43024 -0.66284 -0.26725 0.17766 1.04587 1.31434 1.34744 1.45829 1.56149 1.64181 2.19594 2.20213 2.37206 3.00677 3.40372 3.51267 3.66289 3.73379 3.76328 3.93533 4.00114 4.30719 4.40321 4.44621 4.51542 4.66219 4.77948 4.85671 4.90862 4.91567 4.97196 5.09021 5.13442 5.46097 5.72867 5.73305 5.80151 5.99275 6.51588 6.64827 7.13634 7.30411 8.78930 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.026498 B = 0.003842 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.436545 B = 7286.197976 C = 7493.663748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.104 4.104 3 H 0.127 0.873 4 S -0.043 6.043 5 C 0.034 3.966 6 C -0.078 4.078 7 C -0.045 4.045 8 C -0.087 4.087 9 C 0.062 3.938 10 N -0.142 5.142 11 O -0.608 6.608 12 C 0.519 3.481 13 O -0.579 6.579 14 N -0.599 5.599 15 C 0.077 3.923 16 C 0.262 3.738 17 C -0.551 4.551 18 H 0.043 0.957 19 C 0.013 3.987 20 N -0.923 5.923 21 Si 0.966 3.034 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.281 1.281 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.192 0.808 29 H 0.214 0.786 30 H 0.218 0.782 31 H 0.191 0.809 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.033 0.967 36 H 0.005 0.995 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.494 9.137 -26.711 32.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.235 4.235 3 H 0.145 0.855 4 S 0.194 5.806 5 C -0.201 4.201 6 C -0.101 4.101 7 C -0.072 4.072 8 C -0.107 4.107 9 C -0.087 4.087 10 N 0.175 4.825 11 O -0.661 6.661 12 C 0.305 3.695 13 O -0.460 6.460 14 N -0.330 5.330 15 C -0.065 4.065 16 C 0.141 3.859 17 C -0.589 4.589 18 H 0.061 0.939 19 C -0.186 4.186 20 N -0.562 5.562 21 Si 0.790 3.210 22 H -0.185 1.185 23 H -0.197 1.197 24 H -0.206 1.206 25 H 0.100 0.900 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.209 0.791 29 H 0.231 0.769 30 H 0.235 0.765 31 H 0.208 0.792 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.051 0.949 36 H 0.023 0.977 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.412 7.565 -26.138 30.792 hybrid contribution 1.062 1.290 1.136 2.021 sum -13.349 8.855 -25.002 29.694 Atomic orbital electron populations 1.21916 0.87851 1.04217 1.04213 1.23758 1.02632 1.04534 0.92604 0.85549 1.86056 1.76881 1.22321 0.95316 1.23995 1.04045 0.88124 1.03979 1.22404 0.92529 1.04159 0.91041 1.22548 0.95296 0.91991 0.97359 1.22586 0.93316 0.98308 0.96459 1.23398 0.97688 0.99237 0.88360 1.43878 1.19354 1.05401 1.13904 1.97600 1.56241 1.83221 1.29050 1.20159 0.78304 0.86350 0.84656 1.90639 1.50319 1.19507 1.85564 1.48048 1.61883 1.14351 1.08695 1.21990 1.00693 0.80613 1.03219 1.18847 0.93488 0.91890 0.81683 1.21660 0.94426 1.33215 1.09636 0.93903 1.25796 1.03669 0.94197 0.94968 1.70025 1.38103 1.34210 1.13889 0.85444 0.78906 0.78608 0.78035 1.18485 1.19726 1.20613 0.90007 0.90735 0.89590 0.79093 0.76926 0.76478 0.79229 0.89769 0.90904 0.90896 0.94863 0.97666 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.37 9.05 71.98 0.65 -2.72 16 2 C -0.10 -3.97 2.18 29.85 0.07 -3.91 16 3 H 0.13 5.25 4.15 -2.39 -0.01 5.24 16 4 S -0.04 -1.56 19.83 -56.49 -1.12 -2.68 16 5 C 0.03 0.86 5.94 84.79 0.50 1.37 16 6 C -0.08 -0.89 9.84 22.50 0.22 -0.67 16 7 C -0.05 -0.07 10.17 22.44 0.23 0.15 16 8 C -0.09 -0.23 10.11 22.38 0.23 0.00 16 9 C 0.06 0.94 10.69 84.64 0.90 1.84 16 10 N -0.14 -4.02 3.60 -192.18 -0.69 -4.71 16 11 O -0.61 -26.83 16.98 -38.76 -0.66 -27.49 16 12 C 0.52 25.45 6.85 87.66 0.60 26.05 16 13 O -0.58 -33.44 15.62 -3.01 -0.05 -33.49 16 14 N -0.60 -29.23 2.86 -851.12 -2.43 -31.66 16 15 C 0.08 2.85 9.56 127.77 1.22 4.07 16 16 C 0.26 15.26 5.16 85.63 0.44 15.71 16 17 C -0.55 -34.69 9.39 25.60 0.24 -34.45 16 18 H 0.04 2.77 7.81 -2.91 -0.02 2.75 16 19 C 0.01 0.81 5.46 84.65 0.46 1.27 16 20 N -0.92 -57.95 13.29 21.45 0.28 -57.67 16 21 Si 0.97 48.20 29.54 68.60 2.03 50.23 16 22 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 24 H -0.28 -14.29 7.11 99.48 0.71 -13.59 16 25 H 0.08 1.79 7.55 -2.39 -0.02 1.77 16 26 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.09 2.11 6.99 -2.39 -0.02 2.10 16 28 H 0.19 1.26 8.06 -2.91 -0.02 1.24 16 29 H 0.21 -1.82 8.06 -2.91 -0.02 -1.84 16 30 H 0.22 -1.68 8.06 -2.91 -0.02 -1.70 16 31 H 0.19 2.31 8.06 -2.91 -0.02 2.29 16 32 H 0.08 2.45 7.69 -2.39 -0.02 2.44 16 33 H 0.07 2.74 8.07 -2.39 -0.02 2.72 16 34 H 0.07 2.55 5.94 -2.39 -0.01 2.54 16 35 H 0.03 1.91 8.07 -2.39 -0.02 1.89 16 36 H 0.01 0.34 7.42 -2.39 -0.02 0.32 16 37 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -101.45 329.81 4.21 -97.24 By element: Atomic # 1 Polarization: 0.42 SS G_CDS: 1.08 Total: 1.50 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 5.77 Total: 8.71 kcal Atomic # 7 Polarization: -91.20 SS G_CDS: -2.84 Total: -94.03 kcal Atomic # 8 Polarization: -60.27 SS G_CDS: -0.71 Total: -60.97 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 2.03 Total: 50.23 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -1.12 Total: -2.68 kcal Total: -101.45 4.21 -97.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052422607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.883 kcal (2) G-P(sol) polarization free energy of solvation -101.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds