Wall clock time and date at job start Fri Apr 10 2020 20:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48503 * 109.46889 * 269.99532 * 3 2 1 5 5 H 1.48498 * 109.47131 * 29.99836 * 3 2 1 6 6 H 1.48500 * 109.47362 * 149.99991 * 3 2 1 7 7 C 1.37876 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00344 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.46897 * 180.02562 * 10 9 7 12 12 C 1.46898 * 110.99888 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.47149 * 35.00177 * 12 11 10 14 14 C 1.52998 * 109.46733 * 155.00124 * 12 11 10 15 15 C 1.50700 * 109.47217 * 294.99711 * 14 12 11 16 16 C 1.38245 * 119.98702 * 269.73292 * 15 14 12 17 17 C 1.38213 * 120.01188 * 179.72843 * 16 15 14 18 18 C 1.38353 * 119.98731 * 0.54052 * 17 16 15 19 19 Cl 1.73607 * 120.01447 * 179.70887 * 18 17 16 20 20 C 1.38352 * 119.97113 * 359.72838 * 18 17 16 21 21 C 1.38210 * 119.99053 * 0.02562 * 20 18 17 22 22 C 1.50698 * 109.47105 * 274.99794 * 12 11 10 23 23 N 1.34770 * 119.99870 * 180.02562 * 22 12 11 24 24 O 1.21281 * 119.99979 * 359.97438 * 22 12 11 25 25 H 0.96991 * 119.99886 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 27 27 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 28 28 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 29 29 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 30 30 H 1.00902 * 110.99923 * 303.95801 * 11 10 9 31 31 H 1.08997 * 109.47741 * 54.99549 * 14 12 11 32 32 H 1.09007 * 109.47097 * 175.00377 * 14 12 11 33 33 H 1.07995 * 119.99275 * 359.97438 * 16 15 14 34 34 H 1.08000 * 120.00951 * 180.26978 * 17 16 15 35 35 H 1.08001 * 120.00499 * 180.02562 * 20 18 17 36 36 H 1.07992 * 119.99650 * 179.97438 * 21 20 18 37 37 H 0.97001 * 120.00276 * 359.97438 * 23 22 12 38 38 H 0.97001 * 119.99894 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4907 -2.6365 0.0022 12 6 6.0171 -4.0079 0.0027 13 1 5.3619 -4.6488 -0.5872 14 6 7.4208 -4.0155 -0.6058 15 6 7.3412 -3.6196 -2.0576 16 6 7.1715 -4.5880 -3.0296 17 6 7.0927 -4.2250 -4.3608 18 6 7.1949 -2.8932 -4.7217 19 17 7.1037 -2.4372 -6.3943 20 6 7.3704 -1.9251 -3.7490 21 6 7.4439 -2.2888 -2.4176 22 6 6.0804 -4.5211 1.4182 23 7 6.5355 -5.7656 1.6640 24 8 5.7227 -3.8139 2.3362 25 1 -0.4849 0.8400 -0.0004 26 1 3.8746 -0.6800 0.8911 27 1 3.8752 -0.6803 -0.8889 28 1 3.6586 -3.1502 -0.8892 29 1 3.6580 -3.1505 0.8908 30 1 5.8529 -2.1100 -0.7787 31 1 8.0529 -3.3071 -0.0703 32 1 7.8466 -5.0157 -0.5248 33 1 7.0964 -5.6279 -2.7482 34 1 6.9557 -4.9811 -5.1197 35 1 7.4498 -0.8853 -4.0300 36 1 7.5812 -1.5332 -1.6583 37 1 6.8219 -6.3311 0.9298 38 1 6.5766 -6.0958 2.5752 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354564310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:22:57 Heat of formation + Delta-G solvation = -29.315179 kcal Electronic energy + Delta-G solvation = -21207.785470 eV Core-core repulsion = 17882.352416 eV Total energy + Delta-G solvation = -3325.433055 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.16057 -39.13063 -36.83463 -35.93705 -33.99229 -33.19026 -32.15948 -31.32561 -30.08695 -27.90404 -24.72558 -23.74067 -22.99885 -21.52905 -20.35443 -19.92972 -17.50189 -17.31021 -16.89533 -16.66866 -15.85243 -15.64000 -14.88140 -14.72293 -14.32392 -13.91213 -13.83124 -13.71424 -13.52244 -13.43799 -13.17322 -12.47764 -12.30473 -11.93207 -11.64607 -11.55236 -11.48362 -11.31486 -11.01380 -10.92029 -10.04031 -9.95313 -9.72261 -9.64029 -9.59959 -9.28901 -9.16084 -8.78486 -8.47636 -7.97667 -5.98576 -3.96273 0.85756 1.04437 1.93293 2.80374 3.33517 3.36426 3.43970 3.51275 3.52950 4.34191 4.45460 4.52145 4.58287 4.64809 4.85883 5.03370 5.07670 5.10854 5.17918 5.36253 5.37478 5.46130 5.67984 5.74176 5.95206 6.00287 6.22512 6.24070 6.28443 6.54225 6.80817 6.83108 7.08229 7.35496 7.41036 7.62721 7.76392 7.91425 8.44433 8.59159 9.05395 9.64050 11.14916 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.009455 B = 0.005222 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2960.535156 B = 5360.210911 C = 7704.600872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.518 4.518 8 H 0.070 0.930 9 C -0.008 4.008 10 C 0.076 3.924 11 N -0.671 5.671 12 C 0.074 3.926 13 H 0.070 0.930 14 C -0.079 4.079 15 C -0.082 4.082 16 C -0.103 4.103 17 C -0.108 4.108 18 C -0.036 4.036 19 Cl -0.073 7.073 20 C -0.103 4.103 21 C -0.102 4.102 22 C 0.517 3.483 23 N -0.865 5.865 24 O -0.506 6.506 25 H 0.262 0.738 26 H 0.028 0.972 27 H 0.007 0.993 28 H 0.020 0.980 29 H 0.068 0.932 30 H 0.341 0.659 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.396 0.604 38 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.663 -12.499 -8.234 25.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.556 4.556 8 H 0.088 0.912 9 C -0.045 4.045 10 C -0.052 4.052 11 N -0.305 5.305 12 C -0.040 4.040 13 H 0.087 0.913 14 C -0.117 4.117 15 C -0.082 4.082 16 C -0.121 4.121 17 C -0.127 4.127 18 C -0.062 4.062 19 Cl -0.045 7.045 20 C -0.122 4.122 21 C -0.120 4.120 22 C 0.300 3.700 23 N -0.431 5.431 24 O -0.378 6.378 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.025 0.975 28 H 0.039 0.961 29 H 0.087 0.913 30 H 0.162 0.838 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.223 0.777 38 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 20.247 -11.617 -7.227 24.436 hybrid contribution 0.175 0.189 -1.160 1.188 sum 20.422 -11.428 -8.387 24.859 Atomic orbital electron populations 1.69913 1.06308 1.26846 1.51343 1.24985 0.94713 0.99147 0.94509 0.86773 0.80671 0.83511 0.78392 1.20414 1.21422 1.18642 1.21046 0.89326 0.94487 1.50779 0.91181 1.19516 0.96694 0.91649 0.96687 1.22027 0.83206 1.00527 0.99395 1.60326 1.10644 1.09742 1.49828 1.21385 0.96068 0.93932 0.92646 0.91261 1.20758 0.96275 1.03293 0.91397 1.19920 0.99371 0.93588 0.95355 1.20988 0.99824 0.99598 0.91729 1.21030 1.00453 0.94330 0.96905 1.20967 1.05163 0.94656 0.85433 1.98376 1.96727 1.92854 1.16506 1.21115 0.99538 0.99482 0.92054 1.21176 0.99118 0.96016 0.95736 1.20670 0.76546 0.81155 0.91653 1.43933 1.70147 1.16690 1.12319 1.90784 1.45101 1.56094 1.45839 0.92787 0.95384 0.97474 0.96139 0.91302 0.83761 0.89080 0.89796 0.85037 0.84938 0.84642 0.84286 0.77676 0.77094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.69 13.96 55.43 0.77 -27.92 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.53 27.47 -169.99 -4.67 17.86 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.26 -6.54 6.54 56.52 0.37 -6.18 16 7 C -0.52 -15.37 9.66 -34.44 -0.33 -15.70 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.19 4.30 -27.88 -0.12 -0.31 16 10 C 0.08 1.63 5.32 -3.82 -0.02 1.61 16 11 N -0.67 -11.53 5.84 -107.95 -0.63 -12.16 16 12 C 0.07 0.95 2.44 -68.87 -0.17 0.78 16 13 H 0.07 0.85 7.80 -51.93 -0.41 0.45 16 14 C -0.08 -0.72 4.92 -27.88 -0.14 -0.85 16 15 C -0.08 -0.79 4.84 -104.62 -0.51 -1.29 16 16 C -0.10 -0.89 9.70 -39.59 -0.38 -1.27 16 17 C -0.11 -1.01 9.83 -39.55 -0.39 -1.40 16 18 C -0.04 -0.38 6.32 -39.50 -0.25 -0.63 16 19 Cl -0.07 -0.77 28.96 -51.86 -1.50 -2.27 16 20 C -0.10 -1.10 9.83 -39.55 -0.39 -1.48 16 21 C -0.10 -1.07 8.04 -39.59 -0.32 -1.38 16 22 C 0.52 7.23 7.30 -10.99 -0.08 7.15 16 23 N -0.86 -7.36 8.73 31.22 0.27 -7.09 16 24 O -0.51 -9.97 16.76 5.56 0.09 -9.88 16 25 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 26 H 0.03 0.74 7.20 -51.93 -0.37 0.37 16 27 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 28 H 0.02 0.43 8.06 -51.93 -0.42 0.01 16 29 H 0.07 1.59 7.62 -51.93 -0.40 1.20 16 30 H 0.34 5.36 5.50 -39.29 -0.22 5.15 16 31 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 32 H 0.08 0.49 7.37 -51.93 -0.38 0.11 16 33 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 34 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 35 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.14 1.37 7.53 -52.49 -0.40 0.97 16 37 H 0.40 1.94 8.19 -40.82 -0.33 1.61 16 38 H 0.40 3.07 8.93 -40.82 -0.36 2.70 16 LS Contribution 334.77 15.07 5.04 5.04 Total: -1.00 -36.28 334.77 -8.76 -45.04 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -4.95 Total: 4.23 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -3.19 Total: -12.87 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.42 Total: -47.16 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.67 Total: 17.86 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.28 -8.76 -45.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354564310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.724 kcal (2) G-P(sol) polarization free energy of solvation -36.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds