Wall clock time and date at job start Fri Apr 10 2020 20:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 119.99762 * 2 1 4 4 N 1.46900 * 109.47256 * 122.18972 * 3 2 1 5 5 C 1.46903 * 110.99653 * 71.95275 * 4 3 2 6 6 C 1.50697 * 109.47168 * 283.30938 * 5 4 3 7 7 H 1.08000 * 119.99714 * 357.24933 * 6 5 4 8 8 C 1.37878 * 119.99700 * 177.24520 * 6 5 4 9 9 N 1.31511 * 120.00409 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99722 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47190 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47142 * 119.99783 * 10 8 6 13 13 H 1.48506 * 109.46853 * 240.00224 * 10 8 6 14 14 C 1.46905 * 111.00186 * 195.90494 * 4 3 2 15 15 H 1.08999 * 109.47088 * 186.05025 * 14 4 3 16 16 C 1.53004 * 109.47115 * 306.04926 * 14 4 3 17 17 C 1.50703 * 109.46805 * 66.04801 * 14 4 3 18 18 N 1.29392 * 124.70303 * 315.02204 * 17 14 4 19 19 C 1.30913 * 117.46388 * 179.97438 * 18 17 14 20 20 C 1.36760 * 113.93262 * 0.02562 * 19 18 17 21 21 C 1.46498 * 126.17790 * 180.02562 * 20 19 18 22 22 O 1.21618 * 120.00076 * 180.02562 * 21 20 19 23 23 O 1.34880 * 120.00325 * 0.02562 * 21 20 19 24 24 S 1.70919 * 124.70348 * 134.72460 * 17 14 4 25 25 H 1.08004 * 120.00102 * 180.02562 * 1 2 3 26 26 H 1.08004 * 120.00388 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.99798 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47338 * 2.18910 * 3 2 1 29 29 H 1.09004 * 109.47108 * 242.19219 * 3 2 1 30 30 H 1.08994 * 109.47200 * 43.31688 * 5 4 3 31 31 H 1.09007 * 109.47026 * 163.31185 * 5 4 3 32 32 H 0.97002 * 120.00112 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.47109 * 180.02562 * 16 14 4 34 34 H 1.09006 * 109.46963 * 300.00030 * 16 14 4 35 35 H 1.08996 * 109.47236 * 59.99577 * 16 14 4 36 36 H 1.08002 * 123.03745 * 179.97438 * 19 18 17 37 37 H 0.96702 * 116.99916 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9473 1.3603 1.1721 5 6 4.0848 0.4437 1.0173 6 6 3.6287 -0.9701 1.2706 7 1 2.6078 -1.1636 1.5649 8 6 4.5149 -2.0165 1.1266 9 7 5.7580 -1.7809 0.7676 10 14 3.9494 -3.7691 1.4399 11 1 2.5161 -3.7649 1.8280 12 1 4.1259 -4.5745 0.2049 13 1 4.7570 -4.3611 2.5367 14 6 3.4074 2.7332 1.4203 15 1 4.1427 2.7300 2.2249 16 6 4.0458 3.2949 0.1483 17 6 2.2341 3.5925 1.8152 18 7 1.0850 3.5888 1.2205 19 6 0.1630 4.3947 1.6833 20 6 0.5659 5.1406 2.7564 21 6 -0.2453 6.1221 3.4809 22 8 0.2291 6.7255 4.4242 23 8 -1.5183 6.3565 3.1017 24 16 2.2344 4.7019 3.1154 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5401 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3558 2.1332 0.0393 29 1 2.6603 1.3801 -0.9090 30 1 4.4794 0.5222 0.0043 31 1 4.8641 0.7077 1.7322 32 1 6.3815 -2.5171 0.6666 33 1 4.3876 4.3134 0.3326 34 1 4.8944 2.6733 -0.1374 35 1 3.3106 3.2980 -0.6563 36 1 -0.8264 4.4648 1.2558 37 1 -2.0139 7.0132 3.6099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588826310.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:22:58 Heat of formation + Delta-G solvation = -5.196613 kcal Electronic energy + Delta-G solvation = -21495.668236 eV Core-core repulsion = 18173.324748 eV Total energy + Delta-G solvation = -3322.343489 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.098 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46421 -39.73423 -37.52182 -36.28260 -33.43363 -32.73628 -31.02145 -29.54815 -26.96658 -26.33833 -24.89024 -23.20688 -22.65424 -21.06938 -19.50187 -18.93788 -18.32375 -17.55478 -16.80692 -16.28052 -15.96832 -15.05746 -14.99455 -14.65945 -14.52601 -14.10043 -13.86100 -13.58288 -13.08864 -12.86036 -12.24652 -12.19712 -11.84533 -11.75453 -11.62999 -11.58697 -11.13311 -11.08479 -11.00423 -10.71217 -10.64594 -10.20986 -9.94660 -9.59313 -9.35181 -9.08788 -8.92174 -8.48140 -8.41597 -7.37134 -6.07281 -4.06362 0.04779 0.95627 1.56590 2.14345 2.88512 2.95950 3.15597 3.28462 3.36794 3.41591 4.05649 4.38726 4.78739 4.87980 4.99900 5.21083 5.27469 5.32432 5.43715 5.74203 5.86422 5.92924 6.03449 6.15383 6.22306 6.28222 6.41925 6.65836 6.74618 7.12629 7.23485 7.53237 7.59533 7.64191 7.66599 7.82222 8.02204 8.10155 8.45168 9.00205 9.55965 11.03148 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.023244 B = 0.003976 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.309615 B = 7040.938402 C = 7404.858948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.109 4.109 3 C 0.065 3.935 4 N -0.517 5.517 5 C 0.192 3.808 6 C -0.503 4.503 7 H 0.073 0.927 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.892 3.108 11 H -0.271 1.271 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.146 3.854 15 H 0.102 0.898 16 C -0.177 4.177 17 C 0.100 3.900 18 N -0.473 5.473 19 C 0.140 3.860 20 C -0.329 4.329 21 C 0.571 3.429 22 O -0.518 6.518 23 O -0.507 6.507 24 S 0.236 5.764 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.134 0.866 28 H 0.107 0.893 29 H 0.030 0.970 30 H 0.003 0.997 31 H 0.026 0.974 32 H 0.261 0.739 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.188 0.812 37 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.371 14.833 1.076 17.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.127 4.127 3 C -0.062 4.062 4 N -0.241 5.241 5 C 0.067 3.933 6 C -0.542 4.542 7 H 0.091 0.909 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.720 3.280 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.033 3.967 15 H 0.120 0.880 16 C -0.237 4.237 17 C -0.174 4.174 18 N -0.186 5.186 19 C -0.021 4.021 20 C -0.451 4.451 21 C 0.415 3.585 22 O -0.408 6.408 23 O -0.319 6.319 24 S 0.496 5.504 25 H 0.102 0.898 26 H 0.101 0.899 27 H 0.151 0.849 28 H 0.124 0.876 29 H 0.048 0.952 30 H 0.020 0.980 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.204 0.796 37 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -8.359 14.405 1.835 16.755 hybrid contribution -0.987 -0.350 -0.496 1.159 sum -9.346 14.055 1.339 16.932 Atomic orbital electron populations 1.23536 0.96098 1.00114 1.07287 1.23549 0.95334 1.00303 0.93504 1.21692 0.96241 0.97425 0.90830 1.62350 1.20696 1.01735 1.39321 1.19869 0.86738 0.90779 0.95932 1.21324 0.97532 0.90166 1.45135 0.90868 1.24972 0.94870 0.99204 0.95527 1.69953 1.03911 1.31863 1.48028 0.86519 0.79003 0.84618 0.77824 1.19553 1.21086 1.21027 1.20493 0.88721 0.89203 0.98318 0.87999 1.22474 1.02042 1.01125 0.98103 1.28042 0.97416 0.97779 0.94131 1.66116 1.00273 1.21258 1.30989 1.22808 0.99787 0.88714 0.90815 1.24758 1.00445 1.11577 1.08355 1.19044 0.79734 0.79342 0.80426 1.90958 1.72631 1.49065 1.28194 1.84569 1.25296 1.61175 1.60841 1.84057 1.04993 1.32426 1.28876 0.89820 0.89862 0.84863 0.87554 0.95236 0.97958 0.95554 0.92973 0.92635 0.90363 0.91496 0.79553 0.72449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.12 14.32 29.01 0.42 -3.70 16 2 C -0.11 -2.19 8.21 -36.03 -0.30 -2.48 16 3 C 0.07 1.26 4.10 -4.98 -0.02 1.24 16 4 N -0.52 -10.44 4.40 -230.90 -1.02 -11.45 16 5 C 0.19 4.60 4.07 -4.98 -0.02 4.58 16 6 C -0.50 -13.29 7.13 -34.44 -0.25 -13.54 16 7 H 0.07 1.95 5.94 -52.49 -0.31 1.64 16 8 C 0.06 1.51 5.46 -17.82 -0.10 1.41 16 9 N -0.90 -25.51 13.29 55.43 0.74 -24.78 16 10 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.15 2.38 2.79 -68.86 -0.19 2.18 16 15 H 0.10 1.60 7.82 -51.93 -0.41 1.19 16 16 C -0.18 -2.58 8.50 37.16 0.32 -2.26 16 17 C 0.10 1.47 6.20 -13.30 -0.08 1.39 16 18 N -0.47 -6.98 7.41 -11.26 -0.08 -7.06 16 19 C 0.14 1.74 11.20 -18.48 -0.21 1.53 16 20 C -0.33 -4.15 6.51 -36.79 -0.24 -4.39 16 21 C 0.57 6.77 8.30 34.06 0.28 7.06 16 22 O -0.52 -7.46 17.75 -19.36 -0.34 -7.80 16 23 O -0.51 -4.17 13.23 -40.99 -0.54 -4.72 16 24 S 0.24 3.03 23.00 -107.50 -2.47 0.55 16 25 H 0.08 1.38 8.06 -52.48 -0.42 0.96 16 26 H 0.08 1.37 7.84 -52.48 -0.41 0.95 16 27 H 0.13 3.03 5.37 -52.49 -0.28 2.75 16 28 H 0.11 1.90 4.38 -51.93 -0.23 1.67 16 29 H 0.03 0.58 6.89 -51.93 -0.36 0.23 16 30 H 0.00 0.07 7.25 -51.93 -0.38 -0.31 16 31 H 0.03 0.67 7.72 -51.93 -0.40 0.26 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 1.24 7.19 -51.93 -0.37 0.86 16 35 H 0.07 0.99 6.69 -51.93 -0.35 0.64 16 36 H 0.19 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.42 1.43 9.11 45.56 0.42 1.84 16 LS Contribution 325.51 15.07 4.91 4.91 Total: -1.00 -31.05 325.51 -7.71 -38.76 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -3.48 Total: 2.54 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -0.39 Total: -6.98 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: -0.36 Total: -43.29 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -0.89 Total: -12.52 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -2.47 Total: 0.55 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.05 -7.71 -38.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826310.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.562 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds