Wall clock time and date at job start Fri Apr 10 2020 20:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99992 * 2 1 4 4 H 1.48501 * 109.47535 * 239.99881 * 3 2 1 5 5 H 1.48498 * 109.46956 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47168 * 119.99943 * 3 2 1 7 7 C 1.38816 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99855 * 199.73442 * 7 2 1 9 9 N 1.36935 * 119.99724 * 19.73547 * 7 2 1 10 10 C 1.46500 * 120.00091 * 11.26106 * 9 7 2 11 11 C 1.50701 * 109.46548 * 269.99836 * 10 9 7 12 12 O 1.21292 * 120.00388 * 0.27605 * 11 10 9 13 13 N 1.34781 * 119.99447 * 180.02562 * 11 10 9 14 14 C 1.40153 * 119.99928 * 175.68117 * 13 11 10 15 15 C 1.38790 * 120.05221 * 27.72303 * 14 13 11 16 16 C 1.38139 * 119.97645 * 179.70016 * 15 14 13 17 17 C 1.38478 * 120.08483 * 0.58068 * 16 15 14 18 18 F 1.35108 * 119.94756 * 179.74514 * 17 16 15 19 19 C 1.38447 * 120.10900 * 359.72284 * 17 16 15 20 20 C 1.38306 * 120.01836 * 359.97437 * 19 17 16 21 21 F 1.35100 * 120.04429 * 180.02562 * 20 19 17 22 22 C 1.46502 * 119.99735 * 191.25899 * 9 7 2 23 23 C 1.52996 * 117.49963 * 14.76743 * 22 9 7 24 24 C 1.52998 * 117.49680 * 306.10960 * 22 9 7 25 25 H 0.96999 * 120.00126 * 4.99399 * 1 2 3 26 26 H 1.08998 * 109.46701 * 149.99784 * 10 9 7 27 27 H 1.08993 * 109.47059 * 29.99609 * 10 9 7 28 28 H 0.96994 * 120.00305 * 355.67839 * 13 11 10 29 29 H 1.08002 * 120.00970 * 0.02562 * 15 14 13 30 30 H 1.07997 * 119.95901 * 180.28168 * 16 15 14 31 31 H 1.08008 * 119.99342 * 180.02562 * 19 17 16 32 32 H 1.08997 * 115.54944 * 160.44347 * 22 9 7 33 33 H 1.09006 * 117.49981 * 0.02562 * 23 22 9 34 34 H 1.08997 * 117.50092 * 145.01860 * 23 22 9 35 35 H 1.09009 * 117.49972 * 214.97779 * 24 22 9 36 36 H 1.09000 * 117.50308 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0427 -1.2297 0.3153 9 7 1.3859 -2.3530 -0.4015 10 6 0.0784 -2.2862 -1.0590 11 6 -1.0105 -2.3564 -0.0196 12 8 -0.7227 -2.4477 1.1552 13 7 -2.3042 -2.3126 -0.3951 14 6 -3.3170 -2.4687 0.5610 15 6 -3.0901 -2.1020 1.8802 16 6 -4.0915 -2.2508 2.8200 17 6 -5.3180 -2.7767 2.4501 18 9 -6.2938 -2.9258 3.3727 19 6 -5.5462 -3.1496 1.1365 20 6 -4.5487 -2.9967 0.1907 21 9 -4.7709 -3.3599 -1.0915 22 6 2.0255 -3.6511 -0.1730 23 6 3.1995 -3.6975 0.8069 24 6 3.4510 -3.8381 -0.6964 25 1 -0.4850 0.8368 -0.0731 26 1 -0.0240 -3.1231 -1.7497 27 1 -0.0041 -1.3489 -1.6090 28 1 -2.5343 -2.1730 -1.3269 29 1 -2.1326 -1.6955 2.1708 30 1 -3.9162 -1.9611 3.8455 31 1 -6.5036 -3.5592 0.8500 32 1 1.3609 -4.5145 -0.2035 33 1 3.4959 -2.7622 1.2820 34 1 3.3075 -4.5915 1.4210 35 1 3.7243 -4.8248 -1.0708 36 1 3.9128 -2.9956 -1.2111 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299563708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:22:23 Heat of formation + Delta-G solvation = -31.589222 kcal Electronic energy + Delta-G solvation = -23859.989338 eV Core-core repulsion = 19982.660993 eV Total energy + Delta-G solvation = -3877.328345 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.108 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.79838 -48.75922 -39.64350 -37.83405 -36.76214 -33.93462 -33.47910 -30.73717 -30.49546 -29.03149 -26.56185 -24.01627 -23.16413 -22.20164 -21.49772 -20.17022 -19.68289 -18.15832 -17.58231 -16.72954 -16.33858 -16.00641 -15.78197 -15.69882 -15.27155 -15.09662 -14.45644 -14.33414 -14.05303 -13.80064 -13.52797 -13.21744 -12.65157 -12.42738 -12.19055 -12.10892 -11.72663 -11.36116 -11.26292 -10.91422 -10.75382 -10.62755 -10.44320 -10.15018 -9.91487 -9.76594 -9.48152 -8.88699 -8.66828 -8.41920 -7.57070 -6.99851 -5.98555 -3.29558 1.18586 1.29294 3.31706 3.38191 3.39027 3.52831 3.67239 4.05737 4.10138 4.38129 4.59183 4.79828 4.83084 5.04744 5.05327 5.30539 5.42044 5.64542 5.76930 5.93852 5.97689 6.03435 6.05597 6.11722 6.36740 6.38908 6.44842 6.53775 6.61460 6.80424 6.82136 6.96776 7.00697 7.34272 7.62992 8.03927 8.21029 8.97724 9.31548 9.64403 10.05320 11.10248 Molecular weight = 296.11amu Principal moments of inertia in cm(-1) A = 0.017285 B = 0.004674 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.468777 B = 5988.756803 C = 6534.829725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.000 4.000 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.242 4.242 8 H 0.082 0.918 9 N -0.539 5.539 10 C 0.168 3.832 11 C 0.531 3.469 12 O -0.504 6.504 13 N -0.681 5.681 14 C 0.144 3.856 15 C -0.081 4.081 16 C -0.140 4.140 17 C 0.083 3.917 18 F -0.142 7.142 19 C -0.172 4.172 20 C 0.071 3.929 21 F -0.136 7.136 22 C 0.129 3.871 23 C -0.200 4.200 24 C -0.221 4.221 25 H 0.256 0.744 26 H 0.045 0.955 27 H 0.113 0.887 28 H 0.404 0.596 29 H 0.178 0.822 30 H 0.138 0.862 31 H 0.143 0.857 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.353 -5.614 -1.506 9.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.197 4.197 3 Si 0.740 3.260 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.371 4.371 8 H 0.100 0.900 9 N -0.253 5.253 10 C 0.037 3.963 11 C 0.319 3.681 12 O -0.376 6.376 13 N -0.326 5.326 14 C 0.044 3.956 15 C -0.101 4.101 16 C -0.160 4.160 17 C 0.063 3.937 18 F -0.121 7.121 19 C -0.192 4.192 20 C 0.049 3.951 21 F -0.115 7.115 22 C 0.019 3.981 23 C -0.239 4.239 24 C -0.262 4.262 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.130 0.870 28 H 0.239 0.761 29 H 0.195 0.805 30 H 0.156 0.844 31 H 0.160 0.840 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.133 -5.512 -0.654 9.038 hybrid contribution -0.114 0.973 -0.327 1.033 sum -7.247 -4.538 -0.981 8.607 Atomic orbital electron populations 1.69748 1.05027 1.26038 1.54568 1.24701 0.95318 0.98243 1.01392 0.86229 0.78804 0.82942 0.78049 1.21121 1.21665 1.21024 1.19275 0.94654 0.84427 1.38702 0.90008 1.43480 1.15867 1.00745 1.65253 1.20766 0.82665 1.01454 0.91382 1.22554 0.81205 0.71738 0.92582 1.90446 1.81340 1.46658 1.19135 1.44145 1.05563 1.73016 1.09839 1.18077 0.87775 0.97809 0.91903 1.21684 1.01121 0.96966 0.90324 1.21199 0.91578 1.01724 1.01455 1.17223 0.86591 1.04000 0.85900 1.91473 1.61502 1.93965 1.65148 1.20673 1.00402 1.06411 0.91702 1.17053 0.94587 1.04031 0.79458 1.91462 1.95146 1.89747 1.35130 1.20939 0.87384 0.89092 1.00670 1.23140 1.06603 1.02123 0.92065 1.23418 1.04949 1.01042 0.96742 0.93316 0.93672 0.86971 0.76121 0.80504 0.84364 0.83959 0.89095 0.88503 0.90546 0.90570 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -23.31 8.66 55.49 0.48 -22.83 16 2 C 0.00 0.00 5.00 -17.43 -0.09 -0.09 16 3 Si 0.91 20.75 29.60 -169.99 -5.03 15.72 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.24 -6.13 8.96 -15.06 -0.13 -6.26 16 8 H 0.08 2.07 6.21 -52.49 -0.33 1.75 16 9 N -0.54 -12.42 2.38 -167.03 -0.40 -12.82 16 10 C 0.17 3.52 5.47 -5.19 -0.03 3.49 16 11 C 0.53 11.32 5.70 -10.98 -0.06 11.26 16 12 O -0.50 -12.47 13.11 5.55 0.07 -12.40 16 13 N -0.68 -12.17 5.29 -9.79 -0.05 -12.22 16 14 C 0.14 2.49 6.43 -83.55 -0.54 1.96 16 15 C -0.08 -1.44 8.77 -39.41 -0.35 -1.79 16 16 C -0.14 -2.13 10.02 -39.53 -0.40 -2.53 16 17 C 0.08 1.20 7.30 -39.42 -0.29 0.92 16 18 F -0.14 -2.00 17.27 2.25 0.04 -1.96 16 19 C -0.17 -2.37 10.00 -39.48 -0.39 -2.77 16 20 C 0.07 1.09 7.31 -39.26 -0.29 0.80 16 21 F -0.14 -1.98 16.86 2.25 0.04 -1.94 16 22 C 0.13 2.61 6.60 -67.93 -0.45 2.16 16 23 C -0.20 -3.82 9.77 -26.70 -0.26 -4.08 16 24 C -0.22 -3.94 10.12 -26.70 -0.27 -4.21 16 25 H 0.26 6.58 8.32 -40.82 -0.34 6.24 16 26 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 27 H 0.11 2.50 6.32 -51.93 -0.33 2.17 16 28 H 0.40 6.17 8.52 -40.82 -0.35 5.82 16 29 H 0.18 3.77 5.66 -52.49 -0.30 3.47 16 30 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 31 H 0.14 1.62 8.06 -52.48 -0.42 1.19 16 32 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 33 H 0.10 2.03 6.44 -51.93 -0.33 1.70 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.17 8.14 -51.92 -0.42 0.74 16 36 H 0.09 1.70 8.13 -51.93 -0.42 1.27 16 LS Contribution 314.16 15.07 4.73 4.73 Total: -1.00 -27.71 314.16 -7.38 -35.09 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -3.72 Total: 9.76 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -3.54 Total: -1.14 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: 0.03 Total: -47.87 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.07 Total: -12.40 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.08 Total: -3.90 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.71 -7.38 -35.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299563708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.504 kcal (2) G-P(sol) polarization free energy of solvation -27.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds