Wall clock time and date at job start Fri Apr 10 2020 20:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99992 * 2 1 4 4 H 1.48501 * 109.47535 * 239.99881 * 3 2 1 5 5 H 1.48498 * 109.46956 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47168 * 119.99943 * 3 2 1 7 7 C 1.38816 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99855 * 199.73442 * 7 2 1 9 9 N 1.36935 * 119.99724 * 19.73547 * 7 2 1 10 10 C 1.46500 * 120.00091 * 11.26106 * 9 7 2 11 11 C 1.50701 * 109.46548 * 269.99836 * 10 9 7 12 12 O 1.21292 * 120.00388 * 0.27605 * 11 10 9 13 13 N 1.34781 * 119.99447 * 180.02562 * 11 10 9 14 14 C 1.40153 * 119.99928 * 175.68117 * 13 11 10 15 15 C 1.38790 * 120.05221 * 27.72303 * 14 13 11 16 16 C 1.38139 * 119.97645 * 179.70016 * 15 14 13 17 17 C 1.38478 * 120.08483 * 0.58068 * 16 15 14 18 18 F 1.35108 * 119.94756 * 179.74514 * 17 16 15 19 19 C 1.38447 * 120.10900 * 359.72284 * 17 16 15 20 20 C 1.38306 * 120.01836 * 359.97437 * 19 17 16 21 21 F 1.35100 * 120.04429 * 180.02562 * 20 19 17 22 22 C 1.46502 * 119.99735 * 191.25899 * 9 7 2 23 23 C 1.52996 * 117.49963 * 14.76743 * 22 9 7 24 24 C 1.52998 * 117.49680 * 306.10960 * 22 9 7 25 25 H 0.96999 * 120.00126 * 4.99399 * 1 2 3 26 26 H 1.08998 * 109.46701 * 149.99784 * 10 9 7 27 27 H 1.08993 * 109.47059 * 29.99609 * 10 9 7 28 28 H 0.96994 * 120.00305 * 355.67839 * 13 11 10 29 29 H 1.08002 * 120.00970 * 0.02562 * 15 14 13 30 30 H 1.07997 * 119.95901 * 180.28168 * 16 15 14 31 31 H 1.08008 * 119.99342 * 180.02562 * 19 17 16 32 32 H 1.08997 * 115.54944 * 160.44347 * 22 9 7 33 33 H 1.09006 * 117.49981 * 0.02562 * 23 22 9 34 34 H 1.08997 * 117.50092 * 145.01860 * 23 22 9 35 35 H 1.09009 * 117.49972 * 214.97779 * 24 22 9 36 36 H 1.09000 * 117.50308 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0427 -1.2297 0.3153 9 7 1.3859 -2.3530 -0.4015 10 6 0.0784 -2.2862 -1.0590 11 6 -1.0105 -2.3564 -0.0196 12 8 -0.7227 -2.4477 1.1552 13 7 -2.3042 -2.3126 -0.3951 14 6 -3.3170 -2.4687 0.5610 15 6 -3.0901 -2.1020 1.8802 16 6 -4.0915 -2.2508 2.8200 17 6 -5.3180 -2.7767 2.4501 18 9 -6.2938 -2.9258 3.3727 19 6 -5.5462 -3.1496 1.1365 20 6 -4.5487 -2.9967 0.1907 21 9 -4.7709 -3.3599 -1.0915 22 6 2.0255 -3.6511 -0.1730 23 6 3.1995 -3.6975 0.8069 24 6 3.4510 -3.8381 -0.6964 25 1 -0.4850 0.8368 -0.0731 26 1 -0.0240 -3.1231 -1.7497 27 1 -0.0041 -1.3489 -1.6090 28 1 -2.5343 -2.1730 -1.3269 29 1 -2.1326 -1.6955 2.1708 30 1 -3.9162 -1.9611 3.8455 31 1 -6.5036 -3.5592 0.8500 32 1 1.3609 -4.5145 -0.2035 33 1 3.4959 -2.7622 1.2820 34 1 3.3075 -4.5915 1.4210 35 1 3.7243 -4.8248 -1.0708 36 1 3.9128 -2.9956 -1.2111 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299563708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:22:22 Heat of formation + Delta-G solvation = -46.089141 kcal Electronic energy + Delta-G solvation = -23860.618102 eV Core-core repulsion = 19982.660993 eV Total energy + Delta-G solvation = -3877.957108 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.98905 -49.91675 -41.11079 -39.30404 -38.30441 -35.46085 -35.18744 -32.45895 -31.80170 -30.44528 -28.22903 -25.73807 -24.45630 -23.50005 -22.97825 -21.78783 -21.27395 -19.46568 -18.94792 -18.15712 -17.93726 -17.57380 -17.24811 -16.92445 -16.54864 -16.28245 -16.10220 -15.80974 -15.52200 -15.34748 -14.94929 -14.74223 -14.20925 -13.94648 -13.63901 -13.44311 -13.14716 -13.07393 -12.69553 -12.56250 -12.39817 -12.24149 -12.11223 -11.92716 -11.70287 -11.20529 -11.00653 -10.45233 -10.26142 -9.98315 -8.92419 -8.76060 -7.88694 -5.20118 -0.06095 0.05276 1.47916 1.50122 1.55783 2.11280 2.27256 2.50996 2.62343 2.87626 3.15272 3.35401 3.41859 3.50148 3.66148 3.88343 4.15853 4.26308 4.30563 4.44057 4.49182 4.61724 4.76298 4.86127 4.92806 4.95301 4.98212 5.18303 5.21723 5.24735 5.32881 5.50780 5.53482 5.67421 5.97184 6.24497 6.70642 7.11318 7.68746 7.87221 8.20632 9.15950 Molecular weight = 296.11amu Principal moments of inertia in cm(-1) A = 0.017285 B = 0.004674 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.468777 B = 5988.756803 C = 6534.829725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.044 4.044 3 Si 0.962 3.038 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.291 1.291 7 C -0.247 4.247 8 H 0.074 0.926 9 N -0.555 5.555 10 C 0.166 3.834 11 C 0.534 3.466 12 O -0.545 6.545 13 N -0.673 5.673 14 C 0.122 3.878 15 C -0.099 4.099 16 C -0.136 4.136 17 C 0.091 3.909 18 F -0.135 7.135 19 C -0.156 4.156 20 C 0.080 3.920 21 F -0.129 7.129 22 C 0.103 3.897 23 C -0.204 4.204 24 C -0.192 4.192 25 H 0.248 0.752 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.416 0.584 29 H 0.140 0.860 30 H 0.154 0.846 31 H 0.176 0.824 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.512 -6.958 -2.100 11.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.239 4.239 3 Si 0.791 3.209 4 H -0.205 1.205 5 H -0.223 1.223 6 H -0.218 1.218 7 C -0.377 4.377 8 H 0.092 0.908 9 N -0.271 5.271 10 C 0.036 3.964 11 C 0.323 3.677 12 O -0.420 6.420 13 N -0.319 5.319 14 C 0.024 3.976 15 C -0.120 4.120 16 C -0.155 4.155 17 C 0.071 3.929 18 F -0.114 7.114 19 C -0.176 4.176 20 C 0.058 3.942 21 F -0.108 7.108 22 C -0.005 4.005 23 C -0.243 4.243 24 C -0.233 4.233 25 H 0.057 0.943 26 H 0.096 0.904 27 H 0.114 0.886 28 H 0.252 0.748 29 H 0.158 0.842 30 H 0.171 0.829 31 H 0.193 0.807 32 H 0.123 0.877 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.129 0.871 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.311 -6.877 -1.277 10.863 hybrid contribution 0.177 1.317 -0.102 1.333 sum -8.134 -5.560 -1.379 9.949 Atomic orbital electron populations 1.69904 1.05476 1.25596 1.55473 1.25263 0.96078 1.00260 1.02268 0.85428 0.77541 0.80203 0.77683 1.20491 1.22339 1.21751 1.19387 0.94500 0.85672 1.38094 0.90845 1.43610 1.16737 1.01142 1.65614 1.20779 0.82106 1.01937 0.91565 1.22475 0.82280 0.71100 0.91892 1.90439 1.82289 1.48689 1.20570 1.43814 1.04911 1.72543 1.10620 1.18191 0.88563 0.99237 0.91605 1.21324 1.00514 0.98694 0.91470 1.21267 0.91378 1.01163 1.01687 1.17171 0.86184 1.03250 0.86290 1.91500 1.61058 1.93818 1.65000 1.20953 1.01096 1.04728 0.90823 1.16956 0.93844 1.03455 0.79993 1.91484 1.95006 1.89588 1.34729 1.21238 0.88451 0.88447 1.02364 1.23133 1.06097 1.01911 0.93168 1.23374 1.02203 1.02287 0.95395 0.94251 0.90369 0.88594 0.74776 0.84209 0.82870 0.80693 0.87745 0.91138 0.88232 0.87121 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.49 8.66 21.65 0.19 -48.30 16 2 C -0.04 -2.29 5.00 84.86 0.42 -1.87 16 3 Si 0.96 43.67 29.60 68.60 2.03 45.70 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 7 C -0.25 -12.76 8.96 84.03 0.75 -12.01 16 8 H 0.07 3.82 6.21 -2.91 -0.02 3.81 16 9 N -0.56 -25.81 2.38 -682.36 -1.62 -27.43 16 10 C 0.17 7.01 5.47 85.63 0.47 7.48 16 11 C 0.53 23.15 5.70 87.66 0.50 23.65 16 12 O -0.54 -27.89 13.11 -3.07 -0.04 -27.93 16 13 N -0.67 -24.15 5.29 -303.26 -1.60 -25.76 16 14 C 0.12 4.21 6.43 38.13 0.25 4.46 16 15 C -0.10 -3.62 8.77 22.38 0.20 -3.43 16 16 C -0.14 -4.01 10.02 22.30 0.22 -3.78 16 17 C 0.09 2.41 7.30 22.38 0.16 2.57 16 18 F -0.14 -3.39 17.27 44.97 0.78 -2.61 16 19 C -0.16 -3.81 10.00 22.34 0.22 -3.59 16 20 C 0.08 2.27 7.31 22.48 0.16 2.44 16 21 F -0.13 -3.44 16.86 44.97 0.76 -2.68 16 22 C 0.10 4.10 6.60 44.99 0.30 4.40 16 23 C -0.20 -7.64 9.77 30.62 0.30 -7.34 16 24 C -0.19 -6.50 10.12 30.62 0.31 -6.19 16 25 H 0.25 13.10 8.32 -92.71 -0.77 12.33 16 26 H 0.08 2.70 8.07 -2.39 -0.02 2.68 16 27 H 0.10 4.35 6.32 -2.39 -0.02 4.33 16 28 H 0.42 12.54 8.52 -92.71 -0.79 11.75 16 29 H 0.14 6.30 5.66 -2.91 -0.02 6.29 16 30 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 31 H 0.18 3.15 8.06 -2.91 -0.02 3.13 16 32 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 33 H 0.07 3.01 6.44 -2.38 -0.02 3.00 16 34 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 35 H 0.11 2.99 8.14 -2.38 -0.02 2.97 16 36 H 0.08 2.80 8.13 -2.39 -0.02 2.78 16 Total: -1.00 -60.55 314.16 5.10 -55.44 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 0.35 Total: 26.77 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 4.27 Total: 6.79 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -3.04 Total: -101.48 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.04 Total: -27.93 kcal Atomic # 9 Polarization: -6.83 SS G_CDS: 1.53 Total: -5.29 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -60.55 5.10 -55.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299563708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.354 kcal (2) G-P(sol) polarization free energy of solvation -60.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds