Wall clock time and date at job start Fri Apr 10 2020 20:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86804 * 120.00052 * 2 1 4 4 H 1.48501 * 109.46925 * 270.00344 * 3 2 1 5 5 H 1.48496 * 109.47050 * 30.00383 * 3 2 1 6 6 H 1.48502 * 109.47315 * 150.00466 * 3 2 1 7 7 C 1.38657 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 O 1.34807 * 119.99716 * 359.97438 * 7 2 1 10 10 C 1.35719 * 116.99719 * 184.92571 * 9 7 2 11 11 C 1.39423 * 120.39074 * 5.52977 * 10 9 7 12 12 C 1.38220 * 118.45643 * 180.24832 * 11 10 9 13 13 C 1.39421 * 119.14654 * 359.74677 * 12 11 10 14 14 C 1.48285 * 119.64993 * 180.02562 * 13 12 11 15 15 C 1.39247 * 119.95871 * 47.45252 * 14 13 12 16 16 C 1.37990 * 119.68349 * 179.97438 * 15 14 13 17 17 C 1.38146 * 120.01173 * 0.10111 * 16 15 14 18 18 C 1.38816 * 120.64554 * 359.97438 * 17 16 15 19 19 C 1.37644 * 119.79889 * 359.55084 * 18 17 16 20 20 C 1.50702 * 121.72040 * 180.77334 * 19 18 17 21 21 C 1.52894 * 109.95835 * 343.10061 * 20 19 18 22 22 N 1.47165 * 108.49289 * 50.40970 * 21 20 19 23 23 C 1.46946 * 109.97456 * 288.54811 * 22 21 20 24 24 N 1.32684 * 120.69846 * 0.02562 * 13 12 11 25 25 C 1.31657 * 121.68560 * 359.97438 * 24 13 12 26 26 H 0.97006 * 119.99871 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.76837 * 359.97006 * 11 10 9 28 28 H 1.08002 * 120.42418 * 179.72837 * 12 11 10 29 29 H 1.07992 * 120.15706 * 0.02562 * 15 14 13 30 30 H 1.07997 * 119.98986 * 180.08497 * 16 15 14 31 31 H 1.08000 * 119.67746 * 180.02562 * 17 16 15 32 32 H 1.09001 * 109.38699 * 103.24998 * 20 19 18 33 33 H 1.09000 * 109.38808 * 223.05093 * 20 19 18 34 34 H 1.08998 * 109.63167 * 170.10564 * 21 20 19 35 35 H 1.09001 * 109.63377 * 290.70295 * 21 20 19 36 36 H 1.00901 * 111.00112 * 165.41231 * 22 21 20 37 37 H 1.08996 * 109.84254 * 292.44374 * 23 22 21 38 38 H 1.09004 * 108.79980 * 172.91456 * 23 22 21 39 39 H 1.08005 * 119.60620 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4402 0.6999 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3348 -2.3682 -0.0005 10 6 2.0701 -3.5042 0.1028 11 6 3.4460 -3.4367 0.3183 12 6 4.1567 -4.6184 0.4120 13 6 3.4777 -5.8304 0.2939 14 6 4.2291 -7.1049 0.3932 15 6 5.1400 -7.2963 1.4289 16 6 5.8357 -8.4847 1.5162 17 6 5.6288 -9.4771 0.5776 18 6 4.7237 -9.2932 -0.4587 19 6 4.0174 -8.1153 -0.5491 20 6 3.0118 -7.8765 -1.6459 21 6 3.2267 -8.8808 -2.7786 22 7 3.2879 -10.2321 -2.1990 23 6 4.5461 -10.4048 -1.4598 24 7 2.1663 -5.8554 0.0936 25 6 1.4599 -4.7484 -0.0003 26 1 -0.4850 0.8401 0.0004 27 1 3.9454 -2.4831 0.4055 28 1 5.2244 -4.6031 0.5743 29 1 5.3005 -6.5186 2.1608 30 1 6.5423 -8.6389 2.3182 31 1 6.1760 -10.4053 0.6513 32 1 2.0049 -7.9930 -1.2452 33 1 3.1324 -6.8649 -2.0334 34 1 2.3969 -8.8216 -3.4828 35 1 4.1626 -8.6595 -3.2916 36 1 3.1904 -10.9371 -2.9143 37 1 5.3864 -10.4014 -2.1539 38 1 4.5172 -11.3599 -0.9354 39 1 0.3940 -4.8080 -0.1640 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236347321.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:23:56 Heat of formation + Delta-G solvation = 31.427789 kcal Electronic energy + Delta-G solvation = -22655.505391 eV Core-core repulsion = 19335.139198 eV Total energy + Delta-G solvation = -3320.366192 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.127 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.21992 -39.23784 -37.26190 -36.34319 -32.99603 -32.36836 -31.56750 -30.77668 -29.88753 -27.95267 -25.60938 -24.52553 -23.40673 -22.88128 -22.42510 -20.66421 -19.38851 -18.19468 -17.33704 -16.62298 -16.14173 -15.63339 -15.29786 -14.95830 -14.65375 -14.58759 -14.23673 -13.92110 -13.69571 -13.62483 -12.93657 -12.89826 -12.78627 -12.40263 -12.27332 -11.94669 -11.83574 -11.77136 -11.44787 -11.29464 -11.11907 -10.66997 -10.60084 -10.43516 -9.84580 -9.14211 -9.01479 -8.86375 -8.76871 -8.39479 -8.33840 -7.31486 -6.63933 -4.21165 1.27980 1.56210 2.01195 2.25073 3.03417 3.03847 3.08898 3.81236 3.86838 4.13472 4.50478 4.71103 4.76408 4.90015 4.95584 5.08903 5.16844 5.20961 5.29682 5.36438 5.39137 5.44189 5.52372 5.65042 5.75763 5.84408 5.89210 6.01655 6.03815 6.15723 6.21242 6.44965 6.55569 6.60197 6.62530 6.75714 6.86188 6.91216 6.96025 7.13336 7.15331 7.29150 7.44659 7.78431 8.72247 8.80785 9.45121 10.52471 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.027233 B = 0.003362 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.925408 B = 8327.209353 C = 8946.005317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.043 3.957 3 Si 0.944 3.056 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.395 4.395 8 H 0.094 0.906 9 O -0.161 6.161 10 C 0.108 3.892 11 C -0.203 4.203 12 C -0.099 4.099 13 C 0.040 3.960 14 C -0.006 4.006 15 C -0.112 4.112 16 C -0.125 4.125 17 C -0.125 4.125 18 C -0.088 4.088 19 C -0.043 4.043 20 C -0.067 4.067 21 C 0.051 3.949 22 N -0.681 5.681 23 C 0.099 3.901 24 N -0.425 5.425 25 C 0.031 3.969 26 H 0.274 0.726 27 H 0.137 0.863 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.032 0.968 36 H 0.341 0.659 37 H 0.041 0.959 38 H 0.083 0.917 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.315 -14.973 -2.209 18.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.163 4.163 3 Si 0.768 3.232 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.471 4.471 8 H 0.111 0.889 9 O -0.061 6.061 10 C 0.050 3.950 11 C -0.229 4.229 12 C -0.119 4.119 13 C -0.095 4.095 14 C -0.007 4.007 15 C -0.131 4.131 16 C -0.143 4.143 17 C -0.144 4.144 18 C -0.089 4.089 19 C -0.044 4.044 20 C -0.104 4.104 21 C -0.078 4.078 22 N -0.312 5.312 23 C -0.030 4.030 24 N -0.134 5.134 25 C -0.133 4.133 26 H 0.084 0.916 27 H 0.155 0.845 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.134 0.866 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.050 0.950 36 H 0.159 0.841 37 H 0.059 0.941 38 H 0.101 0.899 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 9.069 -15.349 -1.746 17.913 hybrid contribution 1.662 1.698 -0.475 2.423 sum 10.730 -13.651 -2.222 17.505 Atomic orbital electron populations 1.70031 1.06058 1.28207 1.44191 1.25357 0.95902 0.99041 0.96045 0.85666 0.78962 0.79661 0.78926 1.19650 1.20030 1.19043 1.21382 0.91929 0.80659 1.53092 0.88892 1.83976 1.34120 1.11410 1.76582 1.20564 0.91092 0.89325 0.93972 1.21463 0.94280 0.98903 1.08231 1.21661 0.99670 0.92024 0.98500 1.19038 0.89898 0.91168 1.09362 1.18447 0.95363 0.92245 0.94609 1.21141 0.96767 0.97598 0.97577 1.20858 1.00381 0.93803 0.99234 1.20926 0.99069 0.99225 0.95167 1.19420 0.97699 0.94752 0.97004 1.19566 0.96248 0.92191 0.96390 1.20475 0.99245 0.97961 0.92732 1.22101 1.00244 0.89021 0.96458 1.60850 1.35352 1.04503 1.30459 1.20790 0.90444 0.97024 0.94717 1.67496 1.06773 1.29991 1.09117 1.21785 0.99886 0.85082 1.06526 0.91608 0.84532 0.86370 0.86074 0.86242 0.86587 0.88639 0.90728 0.90398 0.94986 0.84136 0.94109 0.89882 0.83033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.87 13.67 55.48 0.76 -23.11 16 2 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 3 Si 0.94 19.53 29.55 -169.99 -5.02 14.50 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 7 C -0.39 -10.48 9.46 30.89 0.29 -10.19 16 8 H 0.09 2.27 5.32 -52.49 -0.28 1.99 16 9 O -0.16 -4.35 9.76 0.21 0.00 -4.35 16 10 C 0.11 2.51 6.67 -38.87 -0.26 2.25 16 11 C -0.20 -4.24 9.22 -39.15 -0.36 -4.60 16 12 C -0.10 -1.82 9.45 -39.15 -0.37 -2.19 16 13 C 0.04 0.76 5.47 -82.93 -0.45 0.30 16 14 C -0.01 -0.10 5.62 -104.82 -0.59 -0.69 16 15 C -0.11 -1.63 9.42 -39.30 -0.37 -2.00 16 16 C -0.12 -1.54 10.03 -39.71 -0.40 -1.94 16 17 C -0.13 -1.51 9.64 -39.40 -0.38 -1.89 16 18 C -0.09 -1.19 5.79 -104.65 -0.61 -1.80 16 19 C -0.04 -0.68 5.80 -104.26 -0.60 -1.28 16 20 C -0.07 -1.02 4.51 -27.94 -0.13 -1.14 16 21 C 0.05 0.61 6.58 -3.73 -0.02 0.59 16 22 N -0.68 -7.56 6.90 -114.91 -0.79 -8.35 16 23 C 0.10 1.07 6.33 -4.98 -0.03 1.04 16 24 N -0.42 -8.55 8.41 -9.61 -0.08 -8.63 16 25 C 0.03 0.66 11.14 -17.36 -0.19 0.46 16 26 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.14 2.78 5.82 -52.48 -0.31 2.48 16 28 H 0.12 1.85 7.98 -52.49 -0.42 1.43 16 29 H 0.12 1.63 7.97 -52.49 -0.42 1.21 16 30 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 32 H 0.10 1.60 7.74 -51.93 -0.40 1.20 16 33 H 0.07 1.23 7.29 -51.93 -0.38 0.85 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.03 0.37 8.04 -51.93 -0.42 -0.05 16 36 H 0.34 2.84 8.90 -39.29 -0.35 2.49 16 37 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.77 8.13 -51.93 -0.42 0.35 16 39 H 0.15 3.03 8.06 -52.48 -0.42 2.61 16 LS Contribution 326.21 15.07 4.92 4.92 Total: -1.00 -29.80 326.21 -9.43 -39.23 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -4.64 Total: 7.85 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -4.57 Total: -22.05 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: -0.12 Total: -40.10 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: 0.00 Total: -4.35 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.80 -9.43 -39.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236347321.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.657 kcal (2) G-P(sol) polarization free energy of solvation -29.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds