Wall clock time and date at job start Fri Apr 10 2020 20:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30908 * 1 3 3 Si 1.86807 * 120.00026 * 2 1 4 4 H 1.48500 * 109.47030 * 274.99094 * 3 2 1 5 5 H 1.48500 * 109.47119 * 34.98854 * 3 2 1 6 6 H 1.48498 * 109.47235 * 154.98939 * 3 2 1 7 7 C 1.39846 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00010 * 151.98748 * 7 2 1 9 9 C 1.41103 * 119.99619 * 331.98450 * 7 2 1 10 10 C 1.40908 * 120.15219 * 157.81406 * 9 7 2 11 11 C 1.36308 * 119.84010 * 180.02562 * 10 9 7 12 12 C 1.39597 * 120.15761 * 0.02562 * 11 10 9 13 13 N 1.38815 * 119.84529 * 179.97438 * 12 11 10 14 14 C 1.39595 * 120.00308 * 141.86174 * 13 12 11 15 15 C 1.38986 * 120.08102 * 351.86220 * 14 13 12 16 16 C 1.38059 * 119.92202 * 179.97438 * 15 14 13 17 17 C 1.38326 * 120.07745 * 0.02562 * 16 15 14 18 18 C 1.38275 * 120.16234 * 359.97438 * 17 16 15 19 19 C 1.38107 * 120.08004 * 359.70804 * 18 17 16 20 20 C 1.50698 * 120.04505 * 180.27479 * 19 18 17 21 21 C 1.50701 * 109.47136 * 265.30113 * 20 19 18 22 22 N 1.34775 * 120.00296 * 180.02562 * 21 20 19 23 23 O 1.21286 * 119.99767 * 359.97438 * 21 20 19 24 24 C 1.39609 * 120.31299 * 0.24931 * 12 11 10 25 25 C 1.36310 * 120.15618 * 359.44794 * 24 12 11 26 26 H 0.96998 * 119.99971 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.07783 * 359.97438 * 10 9 7 28 28 H 1.08006 * 119.91633 * 180.02562 * 11 10 9 29 29 H 0.97010 * 119.99747 * 321.86214 * 13 12 11 30 30 H 1.08001 * 120.03796 * 359.97438 * 15 14 13 31 31 H 1.07994 * 119.96104 * 179.97438 * 16 15 14 32 32 H 1.07999 * 119.91791 * 179.97438 * 17 16 15 33 33 H 1.07999 * 119.96174 * 179.97438 * 18 17 16 34 34 H 1.09006 * 109.47312 * 25.29509 * 20 19 18 35 35 H 1.08998 * 109.47820 * 145.29461 * 20 19 18 36 36 H 0.97001 * 119.99501 * 359.97438 * 22 21 20 37 37 H 0.97002 * 120.00093 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.92084 * 179.70310 * 24 12 11 39 39 H 1.07999 * 120.08179 * 180.29099 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 2.3851 2.1074 -1.3948 5 1 1.4973 2.6200 0.8028 6 1 3.5894 1.4121 0.5919 7 6 2.0084 -1.2111 -0.0005 8 1 2.9935 -1.2656 -0.4398 9 6 1.4268 -2.3617 0.5729 10 6 1.8678 -3.6438 0.1892 11 6 1.3012 -4.7510 0.7469 12 6 0.2860 -4.6170 1.6957 13 7 -0.2868 -5.7490 2.2591 14 6 -0.6363 -5.7555 3.6106 15 6 -0.2607 -4.6994 4.4323 16 6 -0.6086 -4.7089 5.7684 17 6 -1.3296 -5.7682 6.2894 18 6 -1.7051 -6.8206 5.4749 19 6 -1.3663 -6.8147 4.1360 20 6 -1.7812 -7.9591 3.2477 21 6 -0.6596 -8.9621 3.1638 22 7 -0.8058 -10.0758 2.4190 23 8 0.3751 -8.7666 3.7656 24 6 -0.1598 -3.3500 2.0764 25 6 0.4020 -2.2340 1.5315 26 1 -0.4850 0.8400 0.0004 27 1 2.6522 -3.7489 -0.5457 28 1 1.6385 -5.7343 0.4539 29 1 -0.4443 -6.5356 1.7136 30 1 0.3026 -3.8723 4.0262 31 1 -0.3167 -3.8889 6.4075 32 1 -1.6000 -5.7732 7.3350 33 1 -2.2677 -7.6461 5.8852 34 1 -2.6673 -8.4390 3.6634 35 1 -2.0066 -7.5817 2.2503 36 1 -1.6332 -10.2320 1.9374 37 1 -0.0837 -10.7212 2.3647 38 1 -0.9489 -3.2537 2.8076 39 1 0.0594 -1.2544 1.8304 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249600708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:23:36 Heat of formation + Delta-G solvation = 8.099213 kcal Electronic energy + Delta-G solvation = -22732.853994 eV Core-core repulsion = 19411.476199 eV Total energy + Delta-G solvation = -3321.377795 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.127 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.09551 -38.82173 -37.53664 -35.03825 -33.72458 -33.29008 -32.38025 -29.89950 -29.45640 -28.34810 -27.14382 -24.78476 -22.26303 -21.76257 -21.06356 -20.29121 -19.89269 -17.51006 -17.44541 -16.89366 -16.71051 -16.44816 -15.40156 -15.05959 -14.87426 -14.02561 -13.91595 -13.90960 -13.70969 -13.37276 -12.83860 -12.68273 -12.36274 -12.16161 -11.98993 -11.94116 -11.33712 -11.21299 -11.15979 -10.90506 -10.76457 -10.53001 -9.99379 -9.94790 -9.86764 -9.76235 -9.42797 -9.06148 -8.36409 -7.78168 -7.60521 -6.96227 -6.49994 -4.27620 1.78537 2.00266 2.64460 2.74978 2.99233 3.04757 3.07706 3.19805 3.50622 3.88422 4.11781 4.32359 4.52497 4.80055 5.01078 5.14120 5.36668 5.46213 5.51644 5.63482 5.84086 6.09510 6.15405 6.18591 6.27302 6.42087 6.67691 6.77957 6.83042 6.87806 6.94618 7.00354 7.08313 7.17086 7.23173 7.32412 7.52051 7.53132 7.74257 7.96992 8.13280 8.24561 8.31467 8.43797 8.57295 8.81643 8.94025 10.04820 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.003734 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.954811 B = 7496.556761 C = 8322.253912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.083 3.917 3 Si 0.899 3.101 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.463 4.463 8 H 0.080 0.920 9 C 0.106 3.894 10 C -0.214 4.214 11 C -0.103 4.103 12 C 0.004 3.996 13 N -0.661 5.661 14 C 0.238 3.762 15 C -0.191 4.191 16 C -0.075 4.075 17 C -0.192 4.192 18 C -0.065 4.065 19 C -0.162 4.162 20 C -0.092 4.092 21 C 0.510 3.490 22 N -0.863 5.863 23 O -0.524 6.524 24 C -0.111 4.111 25 C -0.159 4.159 26 H 0.283 0.717 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.389 0.611 30 H 0.139 0.861 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.399 0.601 37 H 0.398 0.602 38 H 0.098 0.902 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.240 -12.200 5.042 14.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.137 4.137 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.491 4.491 8 H 0.098 0.902 9 C 0.103 3.897 10 C -0.234 4.234 11 C -0.124 4.124 12 C -0.089 4.089 13 N -0.279 5.279 14 C 0.133 3.867 15 C -0.212 4.212 16 C -0.094 4.094 17 C -0.212 4.212 18 C -0.084 4.084 19 C -0.167 4.167 20 C -0.132 4.132 21 C 0.294 3.706 22 N -0.428 5.428 23 O -0.398 6.398 24 C -0.131 4.131 25 C -0.179 4.179 26 H 0.094 0.906 27 H 0.113 0.887 28 H 0.106 0.894 29 H 0.223 0.777 30 H 0.157 0.843 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.227 0.773 37 H 0.229 0.771 38 H 0.116 0.884 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.778 -11.580 5.417 14.029 hybrid contribution 0.112 0.012 -0.618 0.628 sum -5.666 -11.568 4.799 13.746 Atomic orbital electron populations 1.69925 1.07885 1.29707 1.32466 1.25917 0.94478 1.01455 0.91850 0.86451 0.81294 0.80829 0.79148 1.19526 1.19886 1.18189 1.19491 1.02867 0.92951 1.33786 0.90189 1.17582 0.90676 0.91837 0.89623 1.20503 1.05537 0.92295 1.05105 1.20102 0.95753 0.97204 0.99312 1.17063 1.01370 0.85509 1.04978 1.41659 1.64978 1.15193 1.06072 1.17640 0.91540 0.93347 0.84162 1.21210 1.05703 1.00713 0.93614 1.20887 0.96448 0.97513 0.94543 1.20701 1.05153 0.96109 0.99229 1.20530 0.98384 0.97407 0.92089 1.18578 1.06942 0.96376 0.94838 1.20425 0.97166 0.94032 1.01544 1.20874 0.89285 0.82181 0.78242 1.43942 1.21395 1.24487 1.52955 1.90796 1.29261 1.75867 1.43859 1.20422 0.99720 0.91769 1.01208 1.20766 1.01123 0.96773 0.99222 0.90647 0.88728 0.89420 0.77663 0.84297 0.86675 0.87123 0.87115 0.88194 0.88728 0.77300 0.77127 0.88361 0.87013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.54 11.47 55.54 0.64 -18.90 16 2 C 0.08 2.04 4.90 -17.34 -0.08 1.96 16 3 Si 0.90 18.14 29.64 -169.99 -5.04 13.10 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.46 -12.03 8.97 -37.89 -0.34 -12.37 16 8 H 0.08 2.01 7.98 -52.49 -0.42 1.59 16 9 C 0.11 2.76 5.58 -106.79 -0.60 2.16 16 10 C -0.21 -5.20 9.74 -39.27 -0.38 -5.58 16 11 C -0.10 -2.32 9.90 -39.77 -0.39 -2.72 16 12 C 0.00 0.10 5.98 -83.68 -0.50 -0.40 16 13 N -0.66 -12.46 5.29 -8.31 -0.04 -12.51 16 14 C 0.24 4.37 6.39 -83.78 -0.54 3.83 16 15 C -0.19 -3.58 7.90 -39.37 -0.31 -3.90 16 16 C -0.07 -1.22 10.04 -39.61 -0.40 -1.61 16 17 C -0.19 -2.83 10.04 -39.54 -0.40 -3.23 16 18 C -0.07 -0.95 9.68 -39.62 -0.38 -1.33 16 19 C -0.16 -2.51 4.39 -104.41 -0.46 -2.97 16 20 C -0.09 -1.05 5.22 -29.04 -0.15 -1.20 16 21 C 0.51 6.47 8.00 -10.99 -0.09 6.38 16 22 N -0.86 -6.87 8.87 31.22 0.28 -6.59 16 23 O -0.52 -9.43 16.87 5.55 0.09 -9.33 16 24 C -0.11 -2.57 7.24 -39.76 -0.29 -2.85 16 25 C -0.16 -4.03 8.70 -39.27 -0.34 -4.37 16 26 H 0.28 6.43 8.30 -40.82 -0.34 6.10 16 27 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 28 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 29 H 0.39 6.51 6.99 -40.82 -0.29 6.22 16 30 H 0.14 2.85 5.20 -52.49 -0.27 2.58 16 31 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 33 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.10 0.84 8.05 -51.93 -0.42 0.42 16 35 H 0.09 0.99 6.96 -51.93 -0.36 0.62 16 36 H 0.40 1.82 8.83 -40.82 -0.36 1.46 16 37 H 0.40 2.91 8.93 -40.82 -0.36 2.55 16 38 H 0.10 2.15 6.33 -52.49 -0.33 1.82 16 39 H 0.11 2.91 6.37 -52.49 -0.33 2.57 16 LS Contribution 330.35 15.07 4.98 4.98 Total: -1.00 -31.09 330.35 -9.14 -40.23 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -4.40 Total: 17.22 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: -5.65 Total: -28.20 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.87 Total: -38.00 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.04 Total: 13.10 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.09 -9.14 -40.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249600708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.331 kcal (2) G-P(sol) polarization free energy of solvation -31.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds