Wall clock time and date at job start Fri Apr 10 2020 20:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30908 * 1 3 3 Si 1.86807 * 120.00026 * 2 1 4 4 H 1.48500 * 109.47030 * 274.99094 * 3 2 1 5 5 H 1.48500 * 109.47119 * 34.98854 * 3 2 1 6 6 H 1.48498 * 109.47235 * 154.98939 * 3 2 1 7 7 C 1.39846 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00010 * 151.98748 * 7 2 1 9 9 C 1.41103 * 119.99619 * 331.98450 * 7 2 1 10 10 C 1.40908 * 120.15219 * 157.81406 * 9 7 2 11 11 C 1.36308 * 119.84010 * 180.02562 * 10 9 7 12 12 C 1.39597 * 120.15761 * 0.02562 * 11 10 9 13 13 N 1.38815 * 119.84529 * 179.97438 * 12 11 10 14 14 C 1.39595 * 120.00308 * 141.86174 * 13 12 11 15 15 C 1.38986 * 120.08102 * 351.86220 * 14 13 12 16 16 C 1.38059 * 119.92202 * 179.97438 * 15 14 13 17 17 C 1.38326 * 120.07745 * 0.02562 * 16 15 14 18 18 C 1.38275 * 120.16234 * 359.97438 * 17 16 15 19 19 C 1.38107 * 120.08004 * 359.70804 * 18 17 16 20 20 C 1.50698 * 120.04505 * 180.27479 * 19 18 17 21 21 C 1.50701 * 109.47136 * 265.30113 * 20 19 18 22 22 N 1.34775 * 120.00296 * 180.02562 * 21 20 19 23 23 O 1.21286 * 119.99767 * 359.97438 * 21 20 19 24 24 C 1.39609 * 120.31299 * 0.24931 * 12 11 10 25 25 C 1.36310 * 120.15618 * 359.44794 * 24 12 11 26 26 H 0.96998 * 119.99971 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.07783 * 359.97438 * 10 9 7 28 28 H 1.08006 * 119.91633 * 180.02562 * 11 10 9 29 29 H 0.97010 * 119.99747 * 321.86214 * 13 12 11 30 30 H 1.08001 * 120.03796 * 359.97438 * 15 14 13 31 31 H 1.07994 * 119.96104 * 179.97438 * 16 15 14 32 32 H 1.07999 * 119.91791 * 179.97438 * 17 16 15 33 33 H 1.07999 * 119.96174 * 179.97438 * 18 17 16 34 34 H 1.09006 * 109.47312 * 25.29509 * 20 19 18 35 35 H 1.08998 * 109.47820 * 145.29461 * 20 19 18 36 36 H 0.97001 * 119.99501 * 359.97438 * 22 21 20 37 37 H 0.97002 * 120.00093 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.92084 * 179.70310 * 24 12 11 39 39 H 1.07999 * 120.08179 * 180.29099 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 2.3851 2.1074 -1.3948 5 1 1.4973 2.6200 0.8028 6 1 3.5894 1.4121 0.5919 7 6 2.0084 -1.2111 -0.0005 8 1 2.9935 -1.2656 -0.4398 9 6 1.4268 -2.3617 0.5729 10 6 1.8678 -3.6438 0.1892 11 6 1.3012 -4.7510 0.7469 12 6 0.2860 -4.6170 1.6957 13 7 -0.2868 -5.7490 2.2591 14 6 -0.6363 -5.7555 3.6106 15 6 -0.2607 -4.6994 4.4323 16 6 -0.6086 -4.7089 5.7684 17 6 -1.3296 -5.7682 6.2894 18 6 -1.7051 -6.8206 5.4749 19 6 -1.3663 -6.8147 4.1360 20 6 -1.7812 -7.9591 3.2477 21 6 -0.6596 -8.9621 3.1638 22 7 -0.8058 -10.0758 2.4190 23 8 0.3751 -8.7666 3.7656 24 6 -0.1598 -3.3500 2.0764 25 6 0.4020 -2.2340 1.5315 26 1 -0.4850 0.8400 0.0004 27 1 2.6522 -3.7489 -0.5457 28 1 1.6385 -5.7343 0.4539 29 1 -0.4443 -6.5356 1.7136 30 1 0.3026 -3.8723 4.0262 31 1 -0.3167 -3.8889 6.4075 32 1 -1.6000 -5.7732 7.3350 33 1 -2.2677 -7.6461 5.8852 34 1 -2.6673 -8.4390 3.6634 35 1 -2.0066 -7.5817 2.2503 36 1 -1.6332 -10.2320 1.9374 37 1 -0.0837 -10.7212 2.3647 38 1 -0.9489 -3.2537 2.8076 39 1 0.0594 -1.2544 1.8304 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249600708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:23:36 Heat of formation + Delta-G solvation = -11.853261 kcal Electronic energy + Delta-G solvation = -22733.719198 eV Core-core repulsion = 19411.476199 eV Total energy + Delta-G solvation = -3322.242999 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.127 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.32091 -40.10077 -39.09784 -36.64245 -34.99645 -34.62231 -33.56277 -31.62678 -31.17500 -29.81230 -28.32900 -26.54608 -23.70853 -23.21642 -22.54386 -21.87131 -21.06384 -19.30992 -18.51235 -18.13483 -17.92146 -17.66075 -17.08544 -16.41455 -16.01732 -15.67986 -15.40328 -15.22154 -14.90612 -14.73993 -14.45625 -14.10351 -13.92974 -13.72441 -13.55326 -13.10667 -13.04268 -12.90334 -12.73298 -12.39227 -12.10213 -11.88176 -11.62017 -11.56667 -11.19751 -11.05416 -10.88194 -10.59596 -9.60746 -9.47732 -9.44357 -8.77088 -8.07794 -6.18765 0.54989 0.62446 1.06337 1.10852 1.38246 1.48389 1.56840 1.70543 2.19868 2.61475 2.66208 2.69500 3.17308 3.69654 3.78494 4.02588 4.26019 4.33967 4.37181 4.38698 4.40109 4.56346 4.69003 4.84944 4.86867 5.00176 5.09557 5.18729 5.23528 5.32491 5.49489 5.58203 5.65417 5.73585 5.80594 5.91587 5.95570 6.05607 6.16707 6.28603 6.52900 6.56141 6.73990 6.91097 6.94669 7.10665 7.43478 8.25577 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.003734 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.954811 B = 7496.556761 C = 8322.253912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.046 3.954 3 Si 0.973 3.027 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.502 4.502 8 H 0.077 0.923 9 C 0.075 3.925 10 C -0.227 4.227 11 C -0.111 4.111 12 C 0.024 3.976 13 N -0.662 5.662 14 C 0.209 3.791 15 C -0.220 4.220 16 C -0.087 4.087 17 C -0.185 4.185 18 C -0.070 4.070 19 C -0.157 4.157 20 C -0.091 4.091 21 C 0.510 3.490 22 N -0.839 5.839 23 O -0.585 6.585 24 C -0.111 4.111 25 C -0.178 4.178 26 H 0.291 0.709 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.400 0.600 30 H 0.110 0.890 31 H 0.129 0.871 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.141 0.859 35 H 0.107 0.893 36 H 0.419 0.581 37 H 0.405 0.595 38 H 0.105 0.895 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.749 -14.193 6.009 17.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.172 4.172 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.531 4.531 8 H 0.095 0.905 9 C 0.072 3.928 10 C -0.247 4.247 11 C -0.131 4.131 12 C -0.071 4.071 13 N -0.283 5.283 14 C 0.106 3.894 15 C -0.243 4.243 16 C -0.105 4.105 17 C -0.205 4.205 18 C -0.088 4.088 19 C -0.162 4.162 20 C -0.131 4.131 21 C 0.295 3.705 22 N -0.403 5.403 23 O -0.465 6.465 24 C -0.132 4.132 25 C -0.198 4.198 26 H 0.102 0.898 27 H 0.119 0.881 28 H 0.130 0.870 29 H 0.236 0.764 30 H 0.128 0.872 31 H 0.147 0.853 32 H 0.160 0.840 33 H 0.166 0.834 34 H 0.159 0.841 35 H 0.125 0.875 36 H 0.250 0.750 37 H 0.236 0.764 38 H 0.123 0.877 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.346 -13.644 6.371 16.754 hybrid contribution 0.450 0.377 -0.772 0.970 sum -6.896 -13.267 5.599 15.966 Atomic orbital electron populations 1.69949 1.09264 1.31047 1.33152 1.26709 0.95163 1.04453 0.90847 0.85343 0.79507 0.76260 0.79567 1.18420 1.18907 1.18429 1.19706 1.03231 0.94352 1.35777 0.90522 1.17885 0.91590 0.92856 0.90438 1.20692 1.06017 0.92387 1.05581 1.20349 0.95587 0.97808 0.99360 1.17131 1.00130 0.86269 1.03553 1.41468 1.65672 1.14480 1.06700 1.17903 0.93140 0.94615 0.83763 1.21177 1.07104 1.00745 0.95227 1.21129 0.96797 0.98867 0.93752 1.21141 1.03308 0.95141 1.00861 1.21054 0.97917 0.98206 0.91618 1.19034 1.04896 0.96291 0.95986 1.20542 0.98079 0.92719 1.01767 1.21025 0.88535 0.83023 0.77899 1.43727 1.22412 1.22952 1.51236 1.90786 1.31490 1.77389 1.46800 1.20483 0.99710 0.91909 1.01058 1.20697 1.02091 0.96783 1.00185 0.89831 0.88076 0.86985 0.76389 0.87200 0.85266 0.84010 0.83407 0.84102 0.87468 0.74965 0.76425 0.87719 0.88632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.25 11.47 21.81 0.25 -42.00 16 2 C 0.05 2.32 4.90 85.22 0.42 2.73 16 3 Si 0.97 38.08 29.64 68.60 2.03 40.12 16 4 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 5 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 6 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 7 C -0.50 -27.36 8.97 23.36 0.21 -27.15 16 8 H 0.08 4.05 7.98 -2.91 -0.02 4.02 16 9 C 0.08 4.12 5.58 -21.27 -0.12 4.00 16 10 C -0.23 -11.39 9.74 22.47 0.22 -11.17 16 11 C -0.11 -5.03 9.90 22.15 0.22 -4.81 16 12 C 0.02 1.08 5.98 38.70 0.23 1.31 16 13 N -0.66 -24.67 5.29 -180.19 -0.95 -25.62 16 14 C 0.21 7.52 6.39 38.26 0.24 7.76 16 15 C -0.22 -8.43 7.90 22.41 0.18 -8.25 16 16 C -0.09 -2.75 10.04 22.25 0.22 -2.53 16 17 C -0.18 -4.92 10.04 22.30 0.22 -4.69 16 18 C -0.07 -1.77 9.68 22.25 0.22 -1.55 16 19 C -0.16 -4.48 4.39 -19.72 -0.09 -4.57 16 20 C -0.09 -1.76 5.22 29.10 0.15 -1.61 16 21 C 0.51 11.49 8.00 87.66 0.70 12.19 16 22 N -0.84 -10.50 8.87 -173.53 -1.54 -12.04 16 23 O -0.59 -20.23 16.87 -3.05 -0.05 -20.28 16 24 C -0.11 -5.36 7.24 22.15 0.16 -5.19 16 25 C -0.18 -9.51 8.70 22.47 0.20 -9.31 16 26 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 27 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 28 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 29 H 0.40 12.84 6.99 -92.70 -0.65 12.20 16 30 H 0.11 4.76 5.20 -2.91 -0.02 4.75 16 31 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 32 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 33 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 34 H 0.14 1.57 8.05 -2.38 -0.02 1.55 16 35 H 0.11 1.84 6.96 -2.39 -0.02 1.83 16 36 H 0.42 2.06 8.83 -92.71 -0.82 1.24 16 37 H 0.40 4.74 8.93 -92.71 -0.83 3.91 16 38 H 0.10 4.80 6.33 -2.91 -0.02 4.78 16 39 H 0.10 5.31 6.37 -2.91 -0.02 5.29 16 Total: -1.00 -71.58 330.35 1.95 -69.63 By element: Atomic # 1 Polarization: 44.23 SS G_CDS: -1.17 Total: 43.05 kcal Atomic # 6 Polarization: -56.24 SS G_CDS: 3.38 Total: -52.85 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -2.24 Total: -79.66 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.05 Total: -20.28 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.12 kcal Total: -71.58 1.95 -69.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249600708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.775 kcal (2) G-P(sol) polarization free energy of solvation -71.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds