Wall clock time and date at job start Fri Apr 10 2020 20:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38224 * 119.61755 * 2 1 4 4 C 1.38635 * 119.16263 * 179.97438 * 3 2 1 5 5 C 1.38681 * 118.41834 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.41661 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.46746 * 89.99985 * 6 5 4 8 8 O 1.21280 * 120.00161 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99729 * 180.27384 * 7 6 5 10 10 C 1.39239 * 120.00199 * 175.43079 * 9 7 6 11 11 C 1.39477 * 119.83614 * 215.01566 * 10 9 7 12 12 C 1.36373 * 120.17006 * 179.71638 * 11 10 9 13 13 C 1.40880 * 119.82631 * 0.57915 * 12 11 10 14 14 C 1.41150 * 120.16389 * 179.67723 * 13 12 11 15 15 H 1.07996 * 119.99589 * 214.80171 * 14 13 12 16 16 C 1.39908 * 119.99877 * 34.79882 * 14 13 12 17 17 N 1.30865 * 120.00091 * 355.55844 * 16 14 13 18 18 Si 1.86804 * 119.99594 * 175.56112 * 16 14 13 19 19 H 1.48498 * 109.47207 * 89.99878 * 18 16 14 20 20 H 1.48498 * 109.46906 * 210.00128 * 18 16 14 21 21 H 1.48501 * 109.46919 * 329.99789 * 18 16 14 22 22 C 1.40870 * 119.66740 * 359.69618 * 13 12 11 23 23 C 1.36368 * 119.83276 * 359.97438 * 22 13 12 24 24 C 1.38179 * 119.16277 * 0.27040 * 5 4 3 25 25 N 1.31860 * 119.61930 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.46789 * 90.00012 * 1 2 3 27 27 H 1.09003 * 109.47075 * 209.99973 * 1 2 3 28 28 H 1.09001 * 109.47625 * 330.00195 * 1 2 3 29 29 H 1.07997 * 120.42656 * 359.97438 * 3 2 1 30 30 H 1.07997 * 120.79393 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.47365 * 330.00328 * 6 5 4 32 32 H 1.08994 * 109.47104 * 209.99523 * 6 5 4 33 33 H 0.97006 * 119.99927 * 355.43407 * 9 7 6 34 34 H 1.08001 * 119.91418 * 359.97438 * 11 10 9 35 35 H 1.08000 * 120.08964 * 180.24990 * 12 11 10 36 36 H 0.97003 * 119.99530 * 179.97438 * 17 16 14 37 37 H 1.08005 * 120.08156 * 179.97438 * 22 13 12 38 38 H 1.07997 * 119.91596 * 179.97438 * 23 22 13 39 39 H 1.08001 * 119.61902 * 179.70614 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1900 1.2016 0.0000 4 6 3.5764 1.1906 0.0005 5 6 4.2266 -0.0343 0.0005 6 6 5.7322 -0.0988 0.0005 7 6 6.2340 -0.1203 1.4214 8 8 5.4466 -0.0861 2.3432 9 7 7.5581 -0.1714 1.6677 10 6 8.0262 -0.0953 2.9768 11 6 9.2279 0.5591 3.2472 12 6 9.6898 0.6427 4.5276 13 6 8.9560 0.0553 5.5770 14 6 9.4310 0.1316 6.9040 15 1 9.2667 -0.6908 7.5844 16 6 10.1146 1.2726 7.3377 17 7 10.3900 2.2318 6.4911 18 14 10.6341 1.4269 9.1254 19 1 11.9921 0.8513 9.2976 20 1 10.6510 2.8600 9.5140 21 1 9.6722 0.6920 9.9856 22 6 7.7462 -0.6090 5.2952 23 6 7.2936 -0.6785 4.0106 24 6 3.4766 -1.1948 -0.0057 25 7 2.1586 -1.1463 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6508 2.1373 -0.0004 30 1 4.1366 2.1139 0.0001 31 1 6.1333 0.7749 -0.5132 32 1 6.0571 -1.0035 -0.5132 33 1 8.1850 -0.2612 0.9329 34 1 9.7919 1.0044 2.4410 35 1 10.6184 1.1533 4.7359 36 1 10.8636 3.0230 6.7920 37 1 7.1784 -1.0621 6.0945 38 1 6.3665 -1.1878 3.7930 39 1 3.9755 -2.1527 -0.0106 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080004689.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:22:47 Heat of formation + Delta-G solvation = 13.088802 kcal Electronic energy + Delta-G solvation = -22002.035829 eV Core-core repulsion = 18680.874399 eV Total energy + Delta-G solvation = -3321.161430 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.127 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.51662 -39.45217 -37.28923 -34.53945 -34.00527 -32.92567 -32.33506 -30.25321 -29.57131 -28.73140 -26.34216 -24.67166 -23.58046 -22.07161 -21.38719 -20.69517 -19.61569 -17.38208 -16.97169 -16.76818 -16.43719 -16.09765 -15.25965 -15.02853 -14.73523 -14.51968 -13.94758 -13.68042 -13.34390 -13.10421 -13.05899 -12.69630 -12.43247 -12.39699 -12.24981 -12.08030 -11.69767 -11.61981 -11.35625 -11.16093 -10.98445 -10.73044 -10.05708 -9.82997 -9.51614 -9.50195 -9.44075 -9.18219 -8.91195 -8.75228 -7.56049 -6.87664 -6.62912 -4.35288 1.03155 1.26727 2.53485 3.00658 3.07413 3.09375 3.13503 3.31505 3.55378 3.92428 3.97737 4.22466 4.60018 4.63223 4.69185 4.84596 4.92785 5.14644 5.21187 5.32739 5.41389 5.43161 5.51816 5.64529 5.70567 5.87960 6.06331 6.17450 6.21068 6.43728 6.66168 6.74169 6.90848 7.05909 7.19688 7.28750 7.62780 7.73300 7.85923 7.95226 8.05376 8.24610 8.30670 8.61298 8.73468 8.91852 8.99032 10.28178 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.028270 B = 0.002795 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.201712 B =10015.203874 C =10399.036916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.119 3.881 3 C -0.171 4.171 4 C -0.058 4.058 5 C -0.117 4.117 6 C -0.097 4.097 7 C 0.498 3.502 8 O -0.523 6.523 9 N -0.652 5.652 10 C 0.003 3.997 11 C -0.121 4.121 12 C -0.142 4.142 13 C 0.100 3.900 14 C -0.461 4.461 15 H 0.076 0.924 16 C 0.069 3.931 17 N -0.812 5.812 18 Si 0.915 3.085 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.206 4.206 23 C -0.085 4.085 24 C 0.118 3.882 25 N -0.485 5.485 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.396 0.604 34 H 0.091 0.909 35 H 0.132 0.868 36 H 0.277 0.723 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.116 -0.988 -14.753 17.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.018 4.018 3 C -0.191 4.191 4 C -0.084 4.084 5 C -0.119 4.119 6 C -0.138 4.138 7 C 0.284 3.716 8 O -0.399 6.399 9 N -0.295 5.295 10 C -0.089 4.089 11 C -0.141 4.141 12 C -0.162 4.162 13 C 0.097 3.903 14 C -0.491 4.491 15 H 0.094 0.906 16 C -0.146 4.146 17 N -0.439 5.439 18 Si 0.740 3.260 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.226 4.226 23 C -0.105 4.105 24 C -0.040 4.040 25 N -0.194 5.194 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.151 0.849 30 H 0.150 0.850 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.229 0.771 34 H 0.109 0.891 35 H 0.150 0.850 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.125 0.875 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.074 -1.492 -14.096 17.390 hybrid contribution 1.167 1.106 0.468 1.674 sum -8.907 -0.386 -13.629 16.286 Atomic orbital electron populations 1.20687 0.89029 1.03450 1.02777 1.21265 0.96951 0.88495 0.95103 1.21889 0.94729 0.99208 1.03246 1.21439 0.94417 0.97803 0.94726 1.20275 0.95344 0.94548 1.01737 1.20592 0.92186 1.05240 0.95776 1.20408 0.82737 0.77800 0.90649 1.90721 1.55099 1.48378 1.45737 1.43000 1.06531 1.71934 1.08068 1.17264 0.99100 1.09785 0.82772 1.20312 0.96129 1.00481 0.97191 1.21197 1.01361 1.03450 0.90191 1.17731 0.89514 0.89663 0.93370 1.19500 1.31050 1.01978 0.96618 0.90613 1.25881 0.93507 0.95286 0.99894 1.69760 1.31721 1.06780 1.35688 0.86194 0.79542 0.78109 0.82120 1.19510 1.20302 1.18719 1.20813 0.97718 1.09014 0.95020 1.20394 0.98714 0.98853 0.92539 1.22540 0.89204 0.97800 0.94426 1.67503 1.09751 1.29357 1.12825 0.90626 0.90536 0.90817 0.84939 0.84964 0.87970 0.87905 0.77076 0.89091 0.85027 0.91155 0.88631 0.87535 0.83003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.89 10.17 36.00 0.37 -0.53 16 2 C 0.12 1.46 6.78 -82.59 -0.56 0.90 16 3 C -0.17 -1.94 9.74 -39.44 -0.38 -2.32 16 4 C -0.06 -0.70 9.86 -39.27 -0.39 -1.09 16 5 C -0.12 -1.47 4.39 -104.48 -0.46 -1.93 16 6 C -0.10 -1.06 5.86 -29.04 -0.17 -1.23 16 7 C 0.50 8.20 7.65 -10.98 -0.08 8.12 16 8 O -0.52 -11.15 13.45 5.56 0.07 -11.08 16 9 N -0.65 -10.89 5.30 -9.74 -0.05 -10.94 16 10 C 0.00 0.06 6.31 -83.57 -0.53 -0.46 16 11 C -0.12 -2.73 9.90 -39.79 -0.39 -3.12 16 12 C -0.14 -3.64 8.62 -39.25 -0.34 -3.98 16 13 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 14 C -0.46 -12.35 9.02 -37.85 -0.34 -12.69 16 15 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 16 C 0.07 1.76 5.42 -17.34 -0.09 1.66 16 17 N -0.81 -21.15 10.60 55.55 0.59 -20.56 16 18 Si 0.92 19.07 29.56 -169.99 -5.03 14.05 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 22 C -0.21 -5.26 9.74 -39.26 -0.38 -5.64 16 23 C -0.09 -2.05 8.61 -39.79 -0.34 -2.39 16 24 C 0.12 1.55 10.86 -17.55 -0.19 1.36 16 25 N -0.49 -6.80 10.27 -9.47 -0.10 -6.90 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 29 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.10 0.87 8.10 -51.93 -0.42 0.45 16 32 H 0.10 0.82 8.09 -51.93 -0.42 0.40 16 33 H 0.40 4.95 8.82 -40.82 -0.36 4.59 16 34 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.13 3.48 6.13 -52.49 -0.32 3.16 16 36 H 0.28 6.61 8.30 -40.82 -0.34 6.28 16 37 H 0.10 2.34 8.06 -52.48 -0.42 1.91 16 38 H 0.11 2.55 6.22 -52.49 -0.33 2.23 16 39 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 337.15 15.07 5.08 5.08 Total: -1.00 -32.62 337.15 -9.09 -41.70 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -4.77 Total: 9.89 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -4.88 Total: -21.25 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.44 Total: -38.40 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.07 Total: -11.08 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.62 -9.09 -41.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080004689.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.793 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds