Wall clock time and date at job start Fri Apr 10 2020 20:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38224 * 119.61755 * 2 1 4 4 C 1.38635 * 119.16263 * 179.97438 * 3 2 1 5 5 C 1.38681 * 118.41834 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.41661 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.46746 * 89.99985 * 6 5 4 8 8 O 1.21280 * 120.00161 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99729 * 180.27384 * 7 6 5 10 10 C 1.39239 * 120.00199 * 175.43079 * 9 7 6 11 11 C 1.39477 * 119.83614 * 215.01566 * 10 9 7 12 12 C 1.36373 * 120.17006 * 179.71638 * 11 10 9 13 13 C 1.40880 * 119.82631 * 0.57915 * 12 11 10 14 14 C 1.41150 * 120.16389 * 179.67723 * 13 12 11 15 15 H 1.07996 * 119.99589 * 214.80171 * 14 13 12 16 16 C 1.39908 * 119.99877 * 34.79882 * 14 13 12 17 17 N 1.30865 * 120.00091 * 355.55844 * 16 14 13 18 18 Si 1.86804 * 119.99594 * 175.56112 * 16 14 13 19 19 H 1.48498 * 109.47207 * 89.99878 * 18 16 14 20 20 H 1.48498 * 109.46906 * 210.00128 * 18 16 14 21 21 H 1.48501 * 109.46919 * 329.99789 * 18 16 14 22 22 C 1.40870 * 119.66740 * 359.69618 * 13 12 11 23 23 C 1.36368 * 119.83276 * 359.97438 * 22 13 12 24 24 C 1.38179 * 119.16277 * 0.27040 * 5 4 3 25 25 N 1.31860 * 119.61930 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.46789 * 90.00012 * 1 2 3 27 27 H 1.09003 * 109.47075 * 209.99973 * 1 2 3 28 28 H 1.09001 * 109.47625 * 330.00195 * 1 2 3 29 29 H 1.07997 * 120.42656 * 359.97438 * 3 2 1 30 30 H 1.07997 * 120.79393 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.47365 * 330.00328 * 6 5 4 32 32 H 1.08994 * 109.47104 * 209.99523 * 6 5 4 33 33 H 0.97006 * 119.99927 * 355.43407 * 9 7 6 34 34 H 1.08001 * 119.91418 * 359.97438 * 11 10 9 35 35 H 1.08000 * 120.08964 * 180.24990 * 12 11 10 36 36 H 0.97003 * 119.99530 * 179.97438 * 17 16 14 37 37 H 1.08005 * 120.08156 * 179.97438 * 22 13 12 38 38 H 1.07997 * 119.91596 * 179.97438 * 23 22 13 39 39 H 1.08001 * 119.61902 * 179.70614 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1900 1.2016 0.0000 4 6 3.5764 1.1906 0.0005 5 6 4.2266 -0.0343 0.0005 6 6 5.7322 -0.0988 0.0005 7 6 6.2340 -0.1203 1.4214 8 8 5.4466 -0.0861 2.3432 9 7 7.5581 -0.1714 1.6677 10 6 8.0262 -0.0953 2.9768 11 6 9.2279 0.5591 3.2472 12 6 9.6898 0.6427 4.5276 13 6 8.9560 0.0553 5.5770 14 6 9.4310 0.1316 6.9040 15 1 9.2667 -0.6908 7.5844 16 6 10.1146 1.2726 7.3377 17 7 10.3900 2.2318 6.4911 18 14 10.6341 1.4269 9.1254 19 1 11.9921 0.8513 9.2976 20 1 10.6510 2.8600 9.5140 21 1 9.6722 0.6920 9.9856 22 6 7.7462 -0.6090 5.2952 23 6 7.2936 -0.6785 4.0106 24 6 3.4766 -1.1948 -0.0057 25 7 2.1586 -1.1463 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6508 2.1373 -0.0004 30 1 4.1366 2.1139 0.0001 31 1 6.1333 0.7749 -0.5132 32 1 6.0571 -1.0035 -0.5132 33 1 8.1850 -0.2612 0.9329 34 1 9.7919 1.0044 2.4410 35 1 10.6184 1.1533 4.7359 36 1 10.8636 3.0230 6.7920 37 1 7.1784 -1.0621 6.0945 38 1 6.3665 -1.1878 3.7930 39 1 3.9755 -2.1527 -0.0106 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080004689.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:22:46 Heat of formation + Delta-G solvation = -6.538125 kcal Electronic energy + Delta-G solvation = -22002.886917 eV Core-core repulsion = 18680.874399 eV Total energy + Delta-G solvation = -3322.012518 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.127 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.57866 -40.77901 -39.04057 -36.18423 -35.01776 -34.66886 -33.21301 -31.56120 -31.32160 -30.28935 -27.52341 -26.24666 -24.49757 -23.51751 -22.89488 -22.24465 -21.07450 -19.28347 -18.41874 -17.84914 -17.68389 -17.10838 -16.98534 -16.13554 -16.02819 -15.68086 -15.46926 -14.99177 -14.83794 -14.44352 -14.16182 -14.03308 -13.88432 -13.61262 -13.28080 -13.25133 -13.17204 -13.00823 -12.82920 -12.73107 -12.49470 -12.41425 -11.80004 -11.40218 -11.20852 -10.88592 -10.69598 -10.56394 -10.40807 -9.69894 -9.47174 -8.72704 -8.51324 -6.33932 0.12806 0.36491 0.79918 1.12943 1.38588 1.44221 1.52573 1.82500 2.23135 2.36098 2.79581 2.89874 3.39794 3.65550 3.70673 3.84083 4.03294 4.05082 4.10566 4.39694 4.41701 4.52514 4.57209 4.70378 4.74048 4.79231 4.88422 4.93614 5.13690 5.14948 5.17090 5.21199 5.33283 5.34614 5.44229 5.68906 5.81221 5.91386 6.02583 6.13907 6.39126 6.66941 6.76210 6.95958 6.99701 7.04863 7.44191 8.41316 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.028270 B = 0.002795 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.201712 B =10015.203874 C =10399.036916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.102 3.898 3 C -0.176 4.176 4 C -0.071 4.071 5 C -0.131 4.131 6 C -0.081 4.081 7 C 0.498 3.502 8 O -0.575 6.575 9 N -0.644 5.644 10 C 0.024 3.976 11 C -0.118 4.118 12 C -0.160 4.160 13 C 0.066 3.934 14 C -0.499 4.499 15 H 0.070 0.930 16 C 0.028 3.972 17 N -0.841 5.841 18 Si 0.988 3.012 19 H -0.259 1.259 20 H -0.269 1.269 21 H -0.264 1.264 22 C -0.223 4.223 23 C -0.098 4.098 24 C 0.099 3.901 25 N -0.515 5.515 26 H 0.092 0.908 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.159 0.841 30 H 0.149 0.851 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.421 0.579 34 H 0.128 0.872 35 H 0.119 0.881 36 H 0.285 0.715 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.099 -0.062 -16.606 18.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.035 4.035 3 C -0.195 4.195 4 C -0.096 4.096 5 C -0.133 4.133 6 C -0.121 4.121 7 C 0.287 3.713 8 O -0.454 6.454 9 N -0.290 5.290 10 C -0.070 4.070 11 C -0.138 4.138 12 C -0.180 4.180 13 C 0.064 3.936 14 C -0.530 4.530 15 H 0.089 0.911 16 C -0.184 4.184 17 N -0.469 5.469 18 Si 0.809 3.191 19 H -0.183 1.183 20 H -0.193 1.193 21 H -0.189 1.189 22 C -0.243 4.243 23 C -0.118 4.118 24 C -0.058 4.058 25 N -0.225 5.225 26 H 0.110 0.890 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.177 0.823 30 H 0.167 0.833 31 H 0.155 0.845 32 H 0.157 0.843 33 H 0.259 0.741 34 H 0.146 0.854 35 H 0.137 0.863 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.123 0.877 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.044 -0.580 -16.015 18.913 hybrid contribution 1.028 0.795 0.874 1.566 sum -9.016 0.215 -15.141 17.624 Atomic orbital electron populations 1.20768 0.86992 1.03955 1.03997 1.21857 0.98560 0.88487 0.94602 1.22240 0.94882 1.00050 1.02361 1.21812 0.95077 0.98411 0.94342 1.20475 0.96263 0.94545 1.02041 1.20611 0.90981 1.08662 0.91823 1.21412 0.81773 0.75537 0.92553 1.90713 1.56285 1.50331 1.48040 1.42938 1.07580 1.71802 1.06646 1.17310 0.97964 1.06970 0.84729 1.20585 0.96438 0.99753 0.97039 1.21196 1.01230 1.04149 0.91410 1.18032 0.90375 0.90999 0.94189 1.19711 1.33258 1.03013 0.97028 0.91147 1.26721 0.92979 0.94371 1.04329 1.69817 1.32188 1.07287 1.37586 0.85116 0.79325 0.78367 0.76335 1.18303 1.19315 1.18864 1.20921 0.97842 1.09657 0.95925 1.20494 0.98991 0.99579 0.92751 1.22851 0.89386 0.98778 0.94785 1.67518 1.10411 1.30579 1.13945 0.88958 0.91309 0.89003 0.82322 0.83299 0.84501 0.84282 0.74144 0.85393 0.86282 0.90457 0.89056 0.87744 0.82006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.60 10.17 71.23 0.72 -0.88 16 2 C 0.10 2.38 6.78 42.55 0.29 2.67 16 3 C -0.18 -3.65 9.74 22.36 0.22 -3.44 16 4 C -0.07 -1.55 9.86 22.47 0.22 -1.33 16 5 C -0.13 -3.01 4.39 -19.77 -0.09 -3.10 16 6 C -0.08 -1.46 5.86 29.10 0.17 -1.29 16 7 C 0.50 15.17 7.65 87.66 0.67 15.84 16 8 O -0.57 -24.04 13.45 -3.03 -0.04 -24.08 16 9 N -0.64 -19.63 5.30 -303.11 -1.61 -21.24 16 10 C 0.02 1.02 6.31 38.56 0.24 1.26 16 11 C -0.12 -5.18 9.90 22.13 0.22 -4.96 16 12 C -0.16 -8.32 8.62 22.48 0.19 -8.13 16 13 C 0.07 3.71 5.55 -21.27 -0.12 3.59 16 14 C -0.50 -27.84 9.02 23.39 0.21 -27.63 16 15 H 0.07 3.82 7.85 -2.91 -0.02 3.79 16 16 C 0.03 1.44 5.42 85.24 0.46 1.90 16 17 N -0.84 -44.53 10.60 21.82 0.23 -44.30 16 18 Si 0.99 39.51 29.56 68.60 2.03 41.54 16 19 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 20 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 21 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 22 C -0.22 -11.88 9.74 22.48 0.22 -11.66 16 23 C -0.10 -4.78 8.61 22.13 0.19 -4.59 16 24 C 0.10 2.50 10.86 84.67 0.92 3.42 16 25 N -0.51 -14.15 10.27 -183.89 -1.89 -16.04 16 26 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.09 1.10 8.08 -2.39 -0.02 1.08 16 29 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 30 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.14 1.60 8.10 -2.39 -0.02 1.58 16 32 H 0.14 1.56 8.09 -2.39 -0.02 1.54 16 33 H 0.42 8.74 8.82 -92.70 -0.82 7.93 16 34 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 35 H 0.12 6.45 6.13 -2.91 -0.02 6.43 16 36 H 0.28 13.67 8.30 -92.71 -0.77 12.90 16 37 H 0.09 4.73 8.06 -2.91 -0.02 4.71 16 38 H 0.10 5.10 6.22 -2.91 -0.02 5.08 16 39 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -74.35 337.15 3.73 -70.62 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: 0.26 Total: 31.81 kcal Atomic # 6 Polarization: -43.06 SS G_CDS: 4.75 Total: -38.31 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -3.27 Total: -81.58 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.04 Total: -24.08 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Total: -74.35 3.73 -70.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080004689.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.080 kcal (2) G-P(sol) polarization free energy of solvation -74.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds