Wall clock time and date at job start Fri Apr 10 2020 20:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47007 * 2 1 4 4 C 1.50701 * 109.46868 * 239.99789 * 2 1 3 5 5 H 1.07994 * 120.00260 * 241.23927 * 4 2 1 6 6 C 1.37878 * 119.99979 * 61.24931 * 4 2 1 7 7 N 1.31518 * 120.00088 * 194.11000 * 6 4 2 8 8 Si 1.86798 * 119.99930 * 14.10330 * 6 4 2 9 9 H 1.48497 * 109.47051 * 84.54119 * 8 6 4 10 10 H 1.48506 * 109.47120 * 204.53544 * 8 6 4 11 11 H 1.48498 * 109.47612 * 324.53575 * 8 6 4 12 12 C 1.53001 * 109.46746 * 120.00269 * 2 1 3 13 13 N 1.46902 * 109.47143 * 299.99830 * 12 2 1 14 14 C 1.46896 * 110.99878 * 180.02562 * 13 12 2 15 15 C 1.50698 * 109.46934 * 179.97438 * 14 13 12 16 16 C 1.38218 * 120.01664 * 259.72274 * 15 14 13 17 17 C 1.38216 * 120.03118 * 179.72114 * 16 15 14 18 18 C 1.38267 * 120.04968 * 0.55266 * 17 16 15 19 19 N 1.47997 * 119.99139 * 179.69799 * 18 17 16 20 20 O 1.21802 * 120.00409 * 180.02562 * 19 18 17 21 21 O 1.21803 * 119.99808 * 0.02687 * 19 18 17 22 22 C 1.38180 * 120.02326 * 359.72541 * 18 17 16 23 23 C 1.38443 * 120.01320 * 79.99638 * 15 14 13 24 24 F 1.35095 * 120.02468 * 0.02598 * 23 15 14 25 25 H 1.08993 * 109.47054 * 309.51950 * 1 2 3 26 26 H 1.09005 * 109.46834 * 69.51570 * 1 2 3 27 27 H 1.09000 * 109.47453 * 189.51002 * 1 2 3 28 28 H 1.09002 * 109.46892 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47377 * 300.00168 * 3 2 1 30 30 H 1.09003 * 109.47120 * 60.00004 * 3 2 1 31 31 H 0.96998 * 120.00203 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46605 * 179.97438 * 12 2 1 33 33 H 1.08998 * 109.47461 * 60.00049 * 12 2 1 34 34 H 1.00900 * 111.00016 * 56.04505 * 13 12 2 35 35 H 1.09006 * 109.46691 * 299.99583 * 14 13 12 36 36 H 1.08992 * 109.47490 * 59.99578 * 14 13 12 37 37 H 1.08011 * 119.98003 * 359.97438 * 16 15 14 38 38 H 1.07994 * 119.97576 * 180.27226 * 17 16 15 39 39 H 1.08000 * 120.00949 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6366 -1.6001 -1.1315 6 6 1.7206 -0.2246 -2.4826 7 7 1.9117 -0.9751 -3.5455 8 14 1.0266 1.4996 -2.6692 9 1 2.1413 2.4799 -2.7118 10 1 0.2443 1.5847 -3.9286 11 1 0.1426 1.8051 -1.5158 12 6 2.0400 -0.7213 1.2492 13 7 1.5503 -0.0288 2.4487 14 6 2.0217 -0.6947 3.6703 15 6 1.5011 0.0426 4.8771 16 6 2.3225 0.9211 5.5581 17 6 1.8436 1.6019 6.6616 18 6 0.5459 1.3964 7.0923 19 7 0.0365 2.1209 8.2780 20 8 -1.1065 1.9397 8.6579 21 8 0.7602 2.8985 8.8739 22 6 -0.2754 0.5142 6.4165 23 6 0.2016 -0.1640 5.3074 24 9 -0.6003 -1.0270 4.6462 25 1 -0.3633 0.6539 0.7927 26 1 -0.3633 0.3597 -0.9627 27 1 -0.3634 -1.0135 0.1698 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6920 -0.6335 -4.4264 32 1 3.1300 -0.7217 1.2490 33 1 1.6766 -1.7490 1.2492 34 1 0.5438 0.0413 2.4401 35 1 1.6584 -1.7223 3.6872 36 1 3.1115 -0.6943 3.6869 37 1 3.3380 1.0788 5.2254 38 1 2.4848 2.2914 7.1904 39 1 -1.2892 0.3542 6.7529 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459727377.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:22:40 Heat of formation + Delta-G solvation = -8.007131 kcal Electronic energy + Delta-G solvation = -23557.201830 eV Core-core repulsion = 19804.356387 eV Total energy + Delta-G solvation = -3752.845443 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.48696 -42.49539 -39.81255 -37.46006 -36.88141 -34.84189 -32.40368 -31.51415 -31.18257 -27.96560 -26.30206 -25.49523 -24.98069 -23.74452 -23.41210 -21.90726 -19.90452 -19.06881 -18.94087 -17.86140 -17.12122 -16.83889 -16.50600 -16.26063 -16.01787 -15.46049 -15.14820 -14.64510 -14.27804 -13.77297 -13.45040 -13.10272 -12.95935 -12.87543 -12.53010 -12.41714 -12.06628 -11.97820 -11.91097 -11.80769 -11.45436 -11.44297 -11.07065 -10.40842 -10.23824 -10.11427 -9.98377 -9.89881 -9.55615 -9.06116 -8.65186 -8.44694 -8.19807 -6.15419 -4.12006 -0.60571 0.34534 0.91878 0.99068 2.67275 3.26848 3.35925 3.40495 3.46825 3.86244 3.97327 4.10677 4.33172 4.37395 4.58525 4.63472 4.99199 5.09325 5.17543 5.22655 5.28079 5.42081 5.64722 5.81049 5.83778 5.97603 6.07311 6.18858 6.34223 6.51685 6.56247 6.71003 6.82538 6.90155 7.18403 7.26450 7.30331 7.42773 7.55189 7.80178 8.45583 8.88438 9.50276 10.97811 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.028767 B = 0.003170 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.117250 B = 8829.576140 C = 8960.832043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.042 3.958 3 C -0.136 4.136 4 C -0.515 4.515 5 H 0.072 0.928 6 C 0.074 3.926 7 N -0.895 5.895 8 Si 0.888 3.112 9 H -0.287 1.287 10 H -0.307 1.307 11 H -0.249 1.249 12 C 0.084 3.916 13 N -0.683 5.683 14 C 0.085 3.915 15 C -0.051 4.051 16 C -0.072 4.072 17 C -0.063 4.063 18 C -0.025 4.025 19 N 0.030 4.970 20 O -0.158 6.158 21 O -0.154 6.154 22 C -0.093 4.093 23 C 0.109 3.891 24 F -0.118 7.118 25 H 0.025 0.975 26 H 0.055 0.945 27 H 0.040 0.960 28 H 0.046 0.954 29 H 0.031 0.969 30 H 0.042 0.958 31 H 0.264 0.736 32 H 0.068 0.932 33 H 0.027 0.973 34 H 0.340 0.660 35 H 0.050 0.950 36 H 0.094 0.906 37 H 0.161 0.839 38 H 0.160 0.840 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.768 2.948 20.536 20.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.040 3.960 3 C -0.192 4.192 4 C -0.553 4.553 5 H 0.090 0.910 6 C -0.128 4.128 7 N -0.532 5.532 8 Si 0.721 3.279 9 H -0.214 1.214 10 H -0.236 1.236 11 H -0.175 1.175 12 C -0.044 4.044 13 N -0.315 5.315 14 C -0.044 4.044 15 C -0.052 4.052 16 C -0.092 4.092 17 C -0.082 4.082 18 C -0.108 4.108 19 N 0.550 4.450 20 O -0.374 6.374 21 O -0.371 6.371 22 C -0.113 4.113 23 C 0.088 3.912 24 F -0.096 7.096 25 H 0.044 0.956 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.159 0.841 35 H 0.068 0.932 36 H 0.112 0.888 37 H 0.179 0.821 38 H 0.178 0.822 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.052 2.974 19.716 19.939 hybrid contribution -1.234 0.158 -0.110 1.249 sum -1.286 3.132 19.606 19.896 Atomic orbital electron populations 1.22313 0.98529 0.99193 1.00208 1.18464 0.91875 0.92612 0.93009 1.22172 1.00438 0.98073 0.98563 1.20824 1.33865 1.12193 0.88453 0.91016 1.24978 0.94669 0.97338 0.95813 1.69958 1.48509 1.35976 0.98762 0.87256 0.79382 0.85501 0.75807 1.21425 1.23641 1.17491 1.22035 0.99677 0.94769 0.87902 1.60773 1.16743 1.53350 1.00656 1.21007 1.01505 0.94839 0.87021 1.20577 0.91732 0.96018 0.96898 1.21048 1.01271 0.93821 0.93011 1.21150 0.92686 0.98364 0.96005 1.20726 0.96197 1.02012 0.91865 1.43514 1.00595 0.99577 1.01323 1.94561 1.03299 1.69482 1.70069 1.94551 1.55831 1.30913 1.55775 1.20840 1.01943 0.94539 0.93987 1.17163 0.88954 0.92583 0.92498 1.91600 1.72339 1.66570 1.79095 0.95580 0.92626 0.94088 0.93513 0.95047 0.93942 0.92637 0.91318 0.95438 0.84122 0.93216 0.88752 0.82127 0.82220 0.81806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 7.24 37.16 0.27 -2.71 16 2 C 0.04 0.89 0.57 -155.66 -0.09 0.80 16 3 C -0.14 -2.82 7.54 37.15 0.28 -2.54 16 4 C -0.52 -13.66 8.62 -34.44 -0.30 -13.95 16 5 H 0.07 2.06 7.99 -52.49 -0.42 1.64 16 6 C 0.07 2.07 5.32 -17.82 -0.09 1.97 16 7 N -0.90 -26.73 13.96 55.43 0.77 -25.96 16 8 Si 0.89 21.51 22.79 -169.99 -3.87 17.64 16 9 H -0.29 -6.93 7.10 56.52 0.40 -6.53 16 10 H -0.31 -7.62 7.11 56.52 0.40 -7.22 16 11 H -0.25 -5.59 4.65 56.52 0.26 -5.33 16 12 C 0.08 1.48 4.57 -3.82 -0.02 1.47 16 13 N -0.68 -9.74 5.71 -115.06 -0.66 -10.40 16 14 C 0.09 0.92 5.54 -4.98 -0.03 0.89 16 15 C -0.05 -0.48 5.40 -104.55 -0.56 -1.04 16 16 C -0.07 -0.54 9.67 -39.60 -0.38 -0.92 16 17 C -0.06 -0.49 9.55 -39.58 -0.38 -0.87 16 18 C -0.02 -0.24 6.85 -79.97 -0.55 -0.79 16 19 N 0.03 0.34 4.45 33.95 0.15 0.49 16 20 O -0.16 -1.97 18.45 -29.46 -0.54 -2.51 16 21 O -0.15 -1.84 18.45 -29.46 -0.54 -2.39 16 22 C -0.09 -0.87 9.53 -39.51 -0.38 -1.25 16 23 C 0.11 1.08 7.24 -39.42 -0.29 0.80 16 24 F -0.12 -1.32 16.66 2.25 0.04 -1.28 16 25 H 0.03 0.46 7.06 -51.93 -0.37 0.10 16 26 H 0.05 1.23 4.30 -51.93 -0.22 1.01 16 27 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.03 0.70 2.26 -51.93 -0.12 0.58 16 30 H 0.04 0.79 7.60 -51.93 -0.39 0.39 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.34 4.97 6.99 -39.29 -0.27 4.69 16 35 H 0.05 0.55 7.95 -51.93 -0.41 0.13 16 36 H 0.09 0.89 8.00 -51.93 -0.42 0.47 16 37 H 0.16 0.85 8.04 -52.48 -0.42 0.43 16 38 H 0.16 0.96 7.61 -52.49 -0.40 0.56 16 39 H 0.16 1.36 7.61 -52.49 -0.40 0.96 16 LS Contribution 323.21 15.07 4.87 4.87 Total: -1.00 -29.78 323.21 -7.10 -36.88 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -4.81 Total: 0.80 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -2.51 Total: -18.14 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.27 Total: -35.86 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: -1.09 Total: -4.90 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -3.87 Total: 17.64 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.78 -7.10 -36.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459727377.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.871 kcal (2) G-P(sol) polarization free energy of solvation -29.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds