Wall clock time and date at job start Fri Apr 10 2020 20:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35767 * 116.99991 * 2 1 4 4 C 1.38928 * 119.91485 * 359.72210 * 3 2 1 5 5 C 1.37739 * 120.11393 * 180.27194 * 4 3 2 6 6 C 1.39724 * 119.95199 * 0.02898 * 5 4 3 7 7 C 1.47601 * 120.07983 * 179.97438 * 6 5 4 8 8 O 1.21588 * 119.99919 * 179.97438 * 7 6 5 9 9 N 1.34776 * 120.00334 * 359.97438 * 7 6 5 10 10 C 1.46495 * 120.00019 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46858 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46971 * 179.97438 * 11 10 9 13 13 N 1.46496 * 109.47186 * 180.02562 * 12 11 10 14 14 C 1.36935 * 120.00177 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99872 * 359.97438 * 14 13 12 16 16 C 1.38810 * 120.00223 * 180.02562 * 14 13 12 17 17 N 1.31625 * 119.99957 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00431 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46690 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47216 * 119.99423 * 18 16 14 21 21 H 1.48499 * 109.47093 * 240.00117 * 18 16 14 22 22 C 1.39739 * 119.83504 * 359.97431 * 6 5 4 23 23 C 1.37891 * 119.88633 * 0.02562 * 22 6 5 24 24 F 1.35099 * 119.98055 * 180.02562 * 23 22 6 25 25 H 1.09004 * 109.46961 * 59.99711 * 1 2 3 26 26 H 1.08993 * 109.46983 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46861 * 300.00316 * 1 2 3 28 28 H 1.07998 * 119.94581 * 0.25585 * 4 3 2 29 29 H 1.08001 * 120.02508 * 180.02562 * 5 4 3 30 30 H 0.96994 * 119.99839 * 359.97438 * 9 7 6 31 31 H 1.08998 * 109.47173 * 299.99173 * 10 9 7 32 32 H 1.09000 * 109.47623 * 59.99044 * 10 9 7 33 33 H 1.08997 * 109.47472 * 299.99535 * 11 10 9 34 34 H 1.09002 * 109.47306 * 60.00401 * 11 10 9 35 35 H 1.08998 * 109.47491 * 300.00034 * 12 11 10 36 36 H 1.09000 * 109.47192 * 59.99837 * 12 11 10 37 37 H 0.97004 * 120.00269 * 359.97438 * 13 12 11 38 38 H 0.97003 * 119.99814 * 180.02562 * 17 16 14 39 39 H 1.08002 * 120.05353 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2870 2.3737 -0.0058 5 6 1.9081 3.6031 -0.0115 6 6 3.3032 3.6799 -0.0120 7 6 3.9717 4.9958 -0.0187 8 8 5.1858 5.0610 -0.0186 9 7 3.2363 6.1253 -0.0248 10 6 3.8998 7.4313 -0.0320 11 6 2.8447 8.5393 -0.0386 12 6 3.5377 9.9034 -0.0454 13 7 2.5275 10.9643 -0.0512 14 6 2.9142 12.2779 -0.0584 15 1 3.9639 12.5318 -0.0594 16 6 1.9570 13.2832 -0.0632 17 7 0.6776 12.9738 -0.0615 18 14 2.4844 15.0752 -0.0723 19 1 3.9673 15.1547 -0.0723 20 1 1.9525 15.7416 -1.2882 21 1 1.9528 15.7538 1.1369 22 6 4.0640 2.5078 -0.0062 23 6 3.4352 1.2806 -0.0005 24 9 4.1689 0.1462 0.0056 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2087 2.3146 -0.0062 29 1 1.3171 4.5071 -0.0156 30 1 2.2677 6.0734 -0.0252 31 1 4.5224 7.5274 0.8575 32 1 4.5226 7.5177 -0.9223 33 1 2.2224 8.4432 -0.9283 34 1 2.2218 8.4532 0.8517 35 1 4.1598 9.9994 0.8444 36 1 4.1610 9.9898 -0.9355 37 1 1.5847 10.7363 -0.0506 38 1 0.0087 13.6763 -0.0653 39 1 5.1426 2.5630 -0.0062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160366607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:23:49 Heat of formation + Delta-G solvation = -84.561807 kcal Electronic energy + Delta-G solvation = -22201.145793 eV Core-core repulsion = 18444.980690 eV Total energy + Delta-G solvation = -3756.165103 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.14746 -40.77158 -39.72275 -37.52504 -36.08075 -34.45172 -32.21240 -31.24736 -30.95120 -29.46147 -27.96348 -25.47453 -23.85155 -23.19849 -22.41579 -21.28149 -20.55703 -19.03841 -18.05545 -17.42848 -17.02929 -16.67004 -16.41370 -15.83121 -15.72868 -15.47160 -15.24750 -14.75166 -14.69392 -14.42337 -14.08960 -13.45283 -13.32634 -13.05578 -13.02911 -12.86662 -12.45165 -12.36975 -11.74322 -11.63028 -11.61904 -11.00041 -10.95690 -10.81471 -10.66214 -10.17513 -10.00802 -9.73490 -9.49897 -9.18377 -8.90859 -8.70952 -6.96025 -5.79860 -3.08743 0.33119 0.63004 2.46215 2.54571 2.96040 3.36003 3.42120 3.48035 3.50207 3.72292 4.11854 4.37681 4.39454 4.55178 4.57986 4.61195 4.66487 4.94603 5.02473 5.05920 5.26757 5.31464 5.44094 5.54931 5.55134 5.58279 5.70131 5.93687 6.02089 6.04527 6.15149 6.28482 6.36250 6.67292 6.75634 6.79864 7.34859 7.68673 8.04304 8.39207 9.50474 10.07244 10.41783 11.43224 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.032835 B = 0.002132 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.553215 B =13131.911224 C =13953.412264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.120 3.880 4 C -0.190 4.190 5 C -0.052 4.052 6 C -0.142 4.142 7 C 0.559 3.441 8 O -0.536 6.536 9 N -0.721 5.721 10 C 0.122 3.878 11 C -0.138 4.138 12 C 0.156 3.844 13 N -0.734 5.734 14 C -0.239 4.239 15 H 0.072 0.928 16 C -0.016 4.016 17 N -0.935 5.935 18 Si 0.908 3.092 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.056 4.056 23 C 0.062 3.938 24 F -0.128 7.128 25 H 0.061 0.939 26 H 0.105 0.895 27 H 0.061 0.939 28 H 0.146 0.854 29 H 0.140 0.860 30 H 0.400 0.600 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.949 -27.539 0.138 27.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.219 6.219 3 C 0.072 3.928 4 C -0.208 4.208 5 C -0.071 4.071 6 C -0.146 4.146 7 C 0.346 3.654 8 O -0.414 6.414 9 N -0.372 5.372 10 C -0.001 4.001 11 C -0.176 4.176 12 C 0.028 3.972 13 N -0.378 5.378 14 C -0.370 4.370 15 H 0.090 0.910 16 C -0.211 4.211 17 N -0.584 5.584 18 Si 0.740 3.260 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.076 4.076 23 C 0.042 3.958 24 F -0.107 7.107 25 H 0.080 0.920 26 H 0.124 0.876 27 H 0.080 0.920 28 H 0.164 0.836 29 H 0.157 0.843 30 H 0.235 0.765 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.217 0.783 38 H 0.064 0.936 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.854 -27.549 0.139 27.563 hybrid contribution -0.822 0.856 -0.004 1.187 sum -1.676 -26.693 0.135 26.746 Atomic orbital electron populations 1.23213 0.77332 1.04697 1.01915 1.86122 1.22236 1.25680 1.87851 1.19277 0.90848 0.85809 0.96828 1.21096 1.00728 0.91033 1.07990 1.21215 0.93262 0.97932 0.94724 1.19701 0.93362 0.93426 1.08073 1.17974 0.86910 0.83726 0.76785 1.90804 1.13394 1.87417 1.49799 1.45968 1.10354 1.06084 1.74819 1.21417 0.95715 0.80216 1.02786 1.21956 0.98095 0.94834 1.02759 1.20522 0.92348 0.86044 0.98297 1.42343 1.04423 1.01450 1.89614 1.19296 0.92476 0.82773 1.42471 0.91006 1.24761 0.95257 0.98113 1.03016 1.69672 0.99042 1.31676 1.57960 0.86090 0.77636 0.85138 0.77187 1.20488 1.21835 1.21840 1.21101 1.01999 0.88818 0.95672 1.16758 0.85892 0.82988 1.10188 1.91529 1.76496 1.48319 1.94341 0.92016 0.87647 0.92011 0.83628 0.84274 0.76498 0.91037 0.91045 0.91233 0.91235 0.95978 0.95981 0.78315 0.93556 0.82511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.31 -2.57 10.35 -19.01 -0.20 -2.76 16 3 C 0.12 1.06 6.70 -38.98 -0.26 0.80 16 4 C -0.19 -1.28 9.01 -39.51 -0.36 -1.63 16 5 C -0.05 -0.38 9.53 -39.21 -0.37 -0.76 16 6 C -0.14 -1.43 5.87 -104.96 -0.62 -2.04 16 7 C 0.56 6.99 7.76 -12.44 -0.10 6.90 16 8 O -0.54 -8.68 16.34 5.29 0.09 -8.59 16 9 N -0.72 -7.91 5.51 -61.33 -0.34 -8.25 16 10 C 0.12 1.59 5.67 -4.04 -0.02 1.56 16 11 C -0.14 -2.01 5.44 -26.73 -0.15 -2.16 16 12 C 0.16 3.04 6.26 -4.04 -0.03 3.01 16 13 N -0.73 -18.40 5.60 -59.91 -0.34 -18.73 16 14 C -0.24 -6.69 9.99 -15.06 -0.15 -6.85 16 15 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 16 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 17 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16 18 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 C -0.06 -0.58 9.56 -39.15 -0.37 -0.96 16 23 C 0.06 0.63 7.30 -39.36 -0.29 0.35 16 24 F -0.13 -1.47 17.10 2.25 0.04 -1.43 16 25 H 0.06 0.17 7.64 -51.93 -0.40 -0.22 16 26 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.17 7.66 -51.93 -0.40 -0.23 16 28 H 0.15 0.57 6.27 -52.49 -0.33 0.24 16 29 H 0.14 0.67 6.39 -52.49 -0.34 0.34 16 30 H 0.40 3.26 6.49 -40.82 -0.27 3.00 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.38 9.96 7.67 -40.82 -0.31 9.65 16 38 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.16 1.63 7.64 -52.49 -0.40 1.23 16 LS Contribution 340.16 15.07 5.13 5.13 Total: -1.00 -34.41 340.16 -6.68 -41.08 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -4.94 Total: 4.82 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -1.81 Total: -1.24 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: 0.05 Total: -54.33 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -0.11 Total: -11.35 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.41 -6.68 -41.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160366607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.478 kcal (2) G-P(sol) polarization free energy of solvation -34.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds