Wall clock time and date at job start Fri Apr 10 2020 20:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35767 * 116.99991 * 2 1 4 4 C 1.38928 * 119.91485 * 359.72210 * 3 2 1 5 5 C 1.37739 * 120.11393 * 180.27194 * 4 3 2 6 6 C 1.39724 * 119.95199 * 0.02898 * 5 4 3 7 7 C 1.47601 * 120.07983 * 179.97438 * 6 5 4 8 8 O 1.21588 * 119.99919 * 179.97438 * 7 6 5 9 9 N 1.34776 * 120.00334 * 359.97438 * 7 6 5 10 10 C 1.46495 * 120.00019 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46858 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46971 * 179.97438 * 11 10 9 13 13 N 1.46496 * 109.47186 * 180.02562 * 12 11 10 14 14 C 1.36935 * 120.00177 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99872 * 359.97438 * 14 13 12 16 16 C 1.38810 * 120.00223 * 180.02562 * 14 13 12 17 17 N 1.31625 * 119.99957 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00431 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46690 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47216 * 119.99423 * 18 16 14 21 21 H 1.48499 * 109.47093 * 240.00117 * 18 16 14 22 22 C 1.39739 * 119.83504 * 359.97431 * 6 5 4 23 23 C 1.37891 * 119.88633 * 0.02562 * 22 6 5 24 24 F 1.35099 * 119.98055 * 180.02562 * 23 22 6 25 25 H 1.09004 * 109.46961 * 59.99711 * 1 2 3 26 26 H 1.08993 * 109.46983 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46861 * 300.00316 * 1 2 3 28 28 H 1.07998 * 119.94581 * 0.25585 * 4 3 2 29 29 H 1.08001 * 120.02508 * 180.02562 * 5 4 3 30 30 H 0.96994 * 119.99839 * 359.97438 * 9 7 6 31 31 H 1.08998 * 109.47173 * 299.99173 * 10 9 7 32 32 H 1.09000 * 109.47623 * 59.99044 * 10 9 7 33 33 H 1.08997 * 109.47472 * 299.99535 * 11 10 9 34 34 H 1.09002 * 109.47306 * 60.00401 * 11 10 9 35 35 H 1.08998 * 109.47491 * 300.00034 * 12 11 10 36 36 H 1.09000 * 109.47192 * 59.99837 * 12 11 10 37 37 H 0.97004 * 120.00269 * 359.97438 * 13 12 11 38 38 H 0.97003 * 119.99814 * 180.02562 * 17 16 14 39 39 H 1.08002 * 120.05353 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2870 2.3737 -0.0058 5 6 1.9081 3.6031 -0.0115 6 6 3.3032 3.6799 -0.0120 7 6 3.9717 4.9958 -0.0187 8 8 5.1858 5.0610 -0.0186 9 7 3.2363 6.1253 -0.0248 10 6 3.8998 7.4313 -0.0320 11 6 2.8447 8.5393 -0.0386 12 6 3.5377 9.9034 -0.0454 13 7 2.5275 10.9643 -0.0512 14 6 2.9142 12.2779 -0.0584 15 1 3.9639 12.5318 -0.0594 16 6 1.9570 13.2832 -0.0632 17 7 0.6776 12.9738 -0.0615 18 14 2.4844 15.0752 -0.0723 19 1 3.9673 15.1547 -0.0723 20 1 1.9525 15.7416 -1.2882 21 1 1.9528 15.7538 1.1369 22 6 4.0640 2.5078 -0.0062 23 6 3.4352 1.2806 -0.0005 24 9 4.1689 0.1462 0.0056 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2087 2.3146 -0.0062 29 1 1.3171 4.5071 -0.0156 30 1 2.2677 6.0734 -0.0252 31 1 4.5224 7.5274 0.8575 32 1 4.5226 7.5177 -0.9223 33 1 2.2224 8.4432 -0.9283 34 1 2.2218 8.4532 0.8517 35 1 4.1598 9.9994 0.8444 36 1 4.1610 9.9898 -0.9355 37 1 1.5847 10.7363 -0.0506 38 1 0.0087 13.6763 -0.0653 39 1 5.1426 2.5630 -0.0062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160366607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:23:49 Heat of formation + Delta-G solvation = -108.942554 kcal Electronic energy + Delta-G solvation = -22202.203022 eV Core-core repulsion = 18444.980690 eV Total energy + Delta-G solvation = -3757.222332 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.94624 -41.50299 -40.53059 -38.24606 -37.46876 -35.97342 -33.83580 -32.07490 -31.87012 -30.80408 -28.46778 -26.96133 -25.01942 -24.10543 -23.58056 -22.57836 -21.56005 -19.75808 -19.18201 -18.67003 -18.13431 -17.29037 -17.28550 -16.89151 -16.81216 -16.47094 -16.13298 -15.86524 -15.61525 -15.35816 -15.31219 -15.26860 -14.61040 -14.08979 -13.94085 -13.75403 -13.30868 -13.28863 -12.89269 -12.84136 -12.58374 -12.40333 -12.20443 -12.15249 -12.02886 -12.02407 -11.79051 -11.15477 -10.94604 -10.21903 -10.13901 -9.38899 -9.00459 -7.96211 -5.24816 -0.38668 -0.02453 1.48923 1.49074 1.59469 1.64109 1.97891 2.08944 2.56746 2.58241 3.07096 3.37990 3.54678 3.59609 3.75812 3.82870 3.96829 4.11416 4.30160 4.31830 4.37207 4.41374 4.44684 4.66398 4.74415 4.75294 4.75783 4.84103 4.90601 4.97211 5.04650 5.27112 5.34101 5.36069 5.42423 5.50453 6.14079 6.27221 6.47380 7.12651 7.33754 8.08682 8.32416 9.27437 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.032835 B = 0.002132 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.553215 B =13131.911224 C =13953.412264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.327 6.327 3 C 0.123 3.877 4 C -0.179 4.179 5 C -0.037 4.037 6 C -0.158 4.158 7 C 0.560 3.440 8 O -0.582 6.582 9 N -0.708 5.708 10 C 0.132 3.868 11 C -0.118 4.118 12 C 0.151 3.849 13 N -0.746 5.746 14 C -0.247 4.247 15 H 0.074 0.926 16 C -0.076 4.076 17 N -0.968 5.968 18 Si 0.973 3.027 19 H -0.268 1.268 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.064 4.064 23 C 0.036 3.964 24 F -0.143 7.143 25 H 0.077 0.923 26 H 0.120 0.880 27 H 0.077 0.923 28 H 0.183 0.817 29 H 0.171 0.829 30 H 0.416 0.584 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.376 0.624 38 H 0.252 0.748 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.601 -27.872 0.139 28.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.240 6.240 3 C 0.075 3.925 4 C -0.197 4.197 5 C -0.056 4.056 6 C -0.161 4.161 7 C 0.348 3.652 8 O -0.463 6.463 9 N -0.360 5.360 10 C 0.008 3.992 11 C -0.157 4.157 12 C 0.024 3.976 13 N -0.390 5.390 14 C -0.379 4.379 15 H 0.092 0.908 16 C -0.268 4.268 17 N -0.619 5.619 18 Si 0.802 3.198 19 H -0.192 1.192 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.084 4.084 23 C 0.016 3.984 24 F -0.121 7.121 25 H 0.096 0.904 26 H 0.138 0.862 27 H 0.096 0.904 28 H 0.200 0.800 29 H 0.188 0.812 30 H 0.254 0.746 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.209 0.791 38 H 0.061 0.939 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.514 -27.913 0.139 28.026 hybrid contribution -0.345 0.848 -0.003 0.916 sum -2.859 -27.064 0.136 27.215 Atomic orbital electron populations 1.23575 0.74930 1.06341 1.03409 1.86111 1.24756 1.25656 1.87498 1.19433 0.90356 0.86907 0.95792 1.21463 1.02311 0.89712 1.06219 1.21535 0.91993 0.99513 0.92514 1.19524 0.94594 0.91691 1.10313 1.18320 0.86426 0.84683 0.75746 1.90781 1.15431 1.88060 1.52023 1.45756 1.11143 1.04951 1.74130 1.21150 0.95117 0.80696 1.02242 1.21708 0.97997 0.92389 1.03559 1.20690 0.91706 0.87230 0.98008 1.42541 1.05107 1.01805 1.89506 1.19675 0.92645 0.84349 1.41223 0.90770 1.25569 0.95408 1.02172 1.03647 1.69806 0.99929 1.32643 1.59475 0.85075 0.77794 0.80154 0.76746 1.19233 1.21900 1.21912 1.21025 1.01641 0.89405 0.96288 1.16948 0.86888 0.82472 1.12056 1.91481 1.77029 1.48956 1.94666 0.90435 0.86202 0.90433 0.79986 0.81198 0.74552 0.91709 0.91714 0.90413 0.90420 0.96020 0.96017 0.79141 0.93902 0.83834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.81 113.37 1.11 1.16 16 2 O -0.33 -4.91 10.35 -90.94 -0.94 -5.85 16 3 C 0.12 1.97 6.70 22.66 0.15 2.12 16 4 C -0.18 -1.79 9.01 22.32 0.20 -1.59 16 5 C -0.04 -0.43 9.53 22.51 0.21 -0.21 16 6 C -0.16 -3.01 5.87 -20.08 -0.12 -3.13 16 7 C 0.56 13.65 7.76 86.71 0.67 14.32 16 8 O -0.58 -19.25 16.34 -3.99 -0.07 -19.31 16 9 N -0.71 -14.22 5.51 -466.21 -2.57 -16.79 16 10 C 0.13 3.26 5.67 86.38 0.49 3.75 16 11 C -0.12 -3.23 5.44 30.60 0.17 -3.06 16 12 C 0.15 5.72 6.26 86.38 0.54 6.26 16 13 N -0.75 -37.03 5.60 -343.45 -1.92 -38.95 16 14 C -0.25 -13.72 9.99 84.03 0.84 -12.88 16 15 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 16 C -0.08 -4.30 5.50 84.86 0.47 -3.84 16 17 N -0.97 -58.13 13.06 21.65 0.28 -57.84 16 18 Si 0.97 45.71 29.55 68.60 2.03 47.74 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 20 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 21 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 22 C -0.06 -1.36 9.56 22.55 0.22 -1.14 16 23 C 0.04 0.75 7.30 22.41 0.16 0.91 16 24 F -0.14 -3.42 17.10 44.97 0.77 -2.65 16 25 H 0.08 0.14 7.64 -2.38 -0.02 0.12 16 26 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 27 H 0.08 0.14 7.66 -2.39 -0.02 0.12 16 28 H 0.18 0.47 6.27 -2.91 -0.02 0.46 16 29 H 0.17 0.85 6.39 -2.91 -0.02 0.83 16 30 H 0.42 5.47 6.49 -92.71 -0.60 4.87 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.38 19.42 7.67 -92.71 -0.71 18.71 16 38 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 39 H 0.14 3.30 7.64 -2.91 -0.02 3.28 16 Total: -1.00 -75.11 340.16 2.48 -72.63 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -0.22 Total: 18.35 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 5.12 Total: 2.67 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -4.21 Total: -113.58 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -1.01 Total: -25.16 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.77 Total: -2.65 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -75.11 2.48 -72.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160366607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.311 kcal (2) G-P(sol) polarization free energy of solvation -75.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds