Wall clock time and date at job start Fri Apr 10 2020 20:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46497 * 119.99832 * 2 1 4 4 C 1.50696 * 109.47322 * 269.99826 * 3 2 1 5 5 C 1.38654 * 120.79229 * 269.71921 * 4 3 2 6 6 C 1.38198 * 119.16104 * 179.79594 * 5 4 3 7 7 N 1.31866 * 120.76747 * 0.48939 * 6 5 4 8 8 C 1.31873 * 121.72840 * 359.74095 * 7 6 5 9 9 C 1.38206 * 120.76135 * 0.02562 * 8 7 6 10 10 C 1.34770 * 119.99857 * 179.97438 * 2 1 3 11 11 O 1.21615 * 119.99849 * 184.65484 * 10 2 1 12 12 C 1.47436 * 120.00173 * 4.65735 * 10 2 1 13 13 C 1.39220 * 120.28209 * 312.95210 * 12 10 2 14 14 C 1.38212 * 120.09250 * 179.97438 * 13 12 10 15 15 C 1.38826 * 120.67810 * 0.02991 * 14 13 12 16 16 C 1.37599 * 120.56746 * 359.97303 * 15 14 13 17 17 C 1.40699 * 119.88195 * 0.02562 * 16 15 14 18 18 C 1.40891 * 120.32864 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00254 * 150.21161 * 18 17 16 20 20 C 1.40272 * 119.99618 * 330.21007 * 18 17 16 21 21 N 1.30625 * 120.00514 * 345.70092 * 20 18 17 22 22 Si 1.86807 * 119.99802 * 165.70458 * 20 18 17 23 23 H 1.48497 * 109.47019 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.46865 * 120.00009 * 22 20 18 25 25 H 1.48500 * 109.46866 * 239.99901 * 22 20 18 26 26 H 1.08995 * 109.47261 * 265.20208 * 1 2 3 27 27 H 1.09001 * 109.47183 * 25.20732 * 1 2 3 28 28 H 1.08995 * 109.46932 * 145.20146 * 1 2 3 29 29 H 1.09011 * 109.47445 * 29.99983 * 3 2 1 30 30 H 1.09001 * 109.47009 * 149.99745 * 3 2 1 31 31 H 1.07998 * 120.41069 * 0.02562 * 5 4 3 32 32 H 1.08007 * 119.61638 * 180.24996 * 6 5 4 33 33 H 1.07992 * 119.62191 * 180.02562 * 8 7 6 34 34 H 1.07990 * 120.42047 * 179.97438 * 9 8 7 35 35 H 1.08003 * 119.95106 * 0.25657 * 13 12 10 36 36 H 1.08003 * 119.66237 * 180.02562 * 14 13 12 37 37 H 1.08000 * 119.71533 * 179.97438 * 15 14 13 38 38 H 1.08003 * 120.05802 * 180.02562 * 16 15 14 39 39 H 0.96998 * 120.00814 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 6 3.6013 1.3180 -2.0880 6 6 3.7954 1.7328 -3.3919 7 7 2.9050 2.4940 -3.9973 8 6 1.8000 2.8838 -3.3923 9 6 1.5355 2.5043 -2.0899 10 6 2.1389 -1.1672 0.0005 11 8 3.3520 -1.1689 0.0860 12 6 1.4054 -2.4419 -0.1026 13 6 0.2860 -2.6740 0.6919 14 6 -0.3991 -3.8702 0.5917 15 6 0.0169 -4.8524 -0.2970 16 6 1.1196 -4.6521 -1.0953 17 6 1.8346 -3.4431 -1.0127 18 6 2.9653 -3.2284 -1.8253 19 1 3.2239 -2.2272 -2.1372 20 6 3.7552 -4.3149 -2.2292 21 7 3.6219 -5.4737 -1.6412 22 14 4.9981 -4.1046 -3.6079 23 1 4.9542 -2.7059 -4.1047 24 1 6.3594 -4.4068 -3.0974 25 1 4.6679 -5.0343 -4.7179 26 1 -0.3633 -0.0860 1.0240 27 1 -0.3633 0.9298 -0.4377 28 1 -0.3633 -0.8438 -0.5865 29 1 1.6084 2.0285 0.5139 30 1 3.1499 1.1384 0.5139 31 1 4.3362 0.6980 -1.5961 32 1 4.6887 1.4331 -3.9199 33 1 1.0935 3.5068 -3.9205 34 1 0.6290 2.8271 -1.5997 35 1 -0.0503 -1.9164 1.3843 36 1 -1.2668 -4.0428 1.2111 37 1 -0.5297 -5.7815 -0.3622 38 1 1.4357 -5.4216 -1.7841 39 1 4.1679 -6.2251 -1.9207 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001540616708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:25:40 Heat of formation + Delta-G solvation = 24.829408 kcal Electronic energy + Delta-G solvation = -23546.270567 eV Core-core repulsion = 20225.618248 eV Total energy + Delta-G solvation = -3320.652320 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.127 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.15062 -39.08543 -36.97312 -35.17864 -33.78552 -32.71513 -31.04407 -30.09273 -29.62807 -27.36502 -26.03923 -25.14753 -23.27068 -22.53093 -21.34682 -20.92440 -18.75712 -17.29421 -16.67161 -16.51245 -15.81568 -15.75432 -15.45613 -15.21147 -14.59294 -14.43820 -13.76237 -13.55337 -13.44709 -13.25818 -12.77364 -12.54316 -12.33957 -12.21866 -12.01241 -11.81786 -11.68024 -11.24236 -11.18168 -11.07240 -10.84078 -10.51682 -9.99678 -9.69210 -9.60381 -9.41785 -9.29290 -8.98829 -8.69625 -8.17949 -7.57383 -7.48281 -6.86555 -4.45549 1.28570 1.36000 2.43933 2.76952 3.05585 3.12293 3.16957 3.55300 3.87494 3.90591 4.08079 4.56158 4.58798 4.79876 4.84664 5.19004 5.29943 5.37725 5.45475 5.52571 5.66319 5.77300 5.79972 5.92932 6.03265 6.07188 6.10750 6.15180 6.29597 6.48376 6.57021 6.86128 6.93642 6.99432 7.07215 7.17128 7.41478 7.63551 7.79107 7.93113 8.04985 8.09782 8.15838 8.50807 8.74098 8.81492 9.14631 10.08537 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.006811 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.114215 B = 4110.137481 C = 5778.782158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.624 5.624 3 C 0.154 3.846 4 C -0.055 4.055 5 C -0.143 4.143 6 C 0.095 3.905 7 N -0.489 5.489 8 C 0.089 3.911 9 C -0.164 4.164 10 C 0.583 3.417 11 O -0.534 6.534 12 C -0.257 4.257 13 C -0.060 4.060 14 C -0.248 4.248 15 C -0.093 4.093 16 C -0.156 4.156 17 C 0.149 3.851 18 C -0.428 4.428 19 H 0.081 0.919 20 C 0.077 3.923 21 N -0.785 5.785 22 Si 0.909 3.091 23 H -0.258 1.258 24 H -0.272 1.272 25 H -0.271 1.271 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.142 0.858 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.130 0.870 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.118 0.882 39 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.612 10.988 0.029 11.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.359 5.359 3 C 0.031 3.969 4 C -0.065 4.065 5 C -0.164 4.164 6 C -0.061 4.061 7 N -0.199 5.199 8 C -0.068 4.068 9 C -0.184 4.184 10 C 0.376 3.624 11 O -0.410 6.410 12 C -0.262 4.262 13 C -0.079 4.079 14 C -0.268 4.268 15 C -0.112 4.112 16 C -0.175 4.175 17 C 0.145 3.855 18 C -0.456 4.456 19 H 0.099 0.901 20 C -0.142 4.142 21 N -0.409 5.409 22 Si 0.733 3.267 23 H -0.181 1.181 24 H -0.197 1.197 25 H -0.196 1.196 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.159 0.841 32 H 0.171 0.829 33 H 0.168 0.832 34 H 0.148 0.852 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.136 0.864 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.687 10.990 -0.759 11.616 hybrid contribution 0.263 -0.381 0.350 0.580 sum -3.424 10.608 -0.410 11.155 Atomic orbital electron populations 1.21841 0.80044 1.02656 1.01214 1.47939 1.06579 1.04917 1.76501 1.20212 0.99123 0.86206 0.91332 1.20804 0.93633 0.94369 0.97684 1.22269 0.98574 0.99449 0.96086 1.22748 0.97745 0.93456 0.92195 1.67629 1.02853 1.11408 1.37981 1.22649 0.94358 0.97642 0.92156 1.21993 1.00029 0.99955 0.96447 1.18589 0.86934 0.83126 0.73717 1.90668 1.14223 1.87081 1.48997 1.19358 1.02761 0.96868 1.07214 1.20723 0.93742 0.96303 0.97105 1.20260 1.03740 0.96282 1.06479 1.20788 0.96806 0.97047 0.96528 1.21280 0.95183 0.99086 1.01941 1.17367 0.90707 0.89451 0.87993 1.19617 1.06885 0.94505 1.24613 0.90111 1.25973 0.97891 0.94322 0.96037 1.69716 1.34689 1.02052 1.34439 0.86232 0.79906 0.80022 0.80561 1.18128 1.19672 1.19625 0.93169 0.92437 0.90046 0.90082 0.88820 0.84062 0.82924 0.83161 0.85228 0.88745 0.89126 0.89137 0.86446 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.21 9.02 59.85 0.54 1.75 16 2 N -0.62 -10.81 2.86 -184.23 -0.53 -11.34 16 3 C 0.15 2.24 5.60 -5.20 -0.03 2.21 16 4 C -0.06 -0.82 5.50 -104.31 -0.57 -1.39 16 5 C -0.14 -2.32 9.82 -39.44 -0.39 -2.71 16 6 C 0.09 1.46 11.18 -17.55 -0.20 1.27 16 7 N -0.49 -7.56 10.36 -13.25 -0.14 -7.70 16 8 C 0.09 1.17 11.18 -17.55 -0.20 0.97 16 9 C -0.16 -2.07 9.82 -39.44 -0.39 -2.46 16 10 C 0.58 13.08 6.60 -12.52 -0.08 13.00 16 11 O -0.53 -13.50 15.16 5.26 0.08 -13.42 16 12 C -0.26 -6.15 5.01 -104.37 -0.52 -6.67 16 13 C -0.06 -1.26 7.72 -39.23 -0.30 -1.57 16 14 C -0.25 -5.19 10.03 -39.37 -0.39 -5.59 16 15 C -0.09 -2.07 10.01 -39.60 -0.40 -2.47 16 16 C -0.16 -3.91 8.65 -38.89 -0.34 -4.25 16 17 C 0.15 3.91 5.54 -106.54 -0.59 3.32 16 18 C -0.43 -11.51 7.82 -37.81 -0.30 -11.80 16 19 H 0.08 2.22 7.03 -52.49 -0.37 1.85 16 20 C 0.08 1.96 5.18 -17.30 -0.09 1.87 16 21 N -0.78 -20.24 11.11 55.56 0.62 -19.62 16 22 Si 0.91 19.22 29.59 -169.99 -5.03 14.19 16 23 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 26 H 0.05 0.63 7.02 -51.93 -0.36 0.26 16 27 H 0.06 0.64 8.04 -51.93 -0.42 0.22 16 28 H 0.08 1.31 6.17 -51.93 -0.32 0.99 16 29 H 0.08 0.89 8.03 -51.92 -0.42 0.47 16 30 H 0.09 1.46 7.32 -51.93 -0.38 1.08 16 31 H 0.14 2.44 7.97 -52.49 -0.42 2.02 16 32 H 0.15 2.04 8.06 -52.48 -0.42 1.62 16 33 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.09 1.70 6.09 -52.48 -0.32 1.38 16 36 H 0.09 1.65 8.06 -52.48 -0.42 1.22 16 37 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.12 3.03 6.44 -52.48 -0.34 2.69 16 39 H 0.28 6.60 8.29 -40.82 -0.34 6.26 16 LS Contribution 331.75 15.07 5.00 5.00 Total: -1.00 -30.69 331.75 -8.83 -39.52 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -4.59 Total: 7.89 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -4.24 Total: -14.52 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: -0.05 Total: -38.66 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.08 Total: -13.42 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.69 -8.83 -39.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001540616708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.352 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds