Wall clock time and date at job start Fri Apr 10 2020 20:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86806 * 119.99931 * 2 1 4 4 H 1.48501 * 109.46920 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46687 * 300.00094 * 3 2 1 6 6 H 1.48500 * 109.47076 * 60.00023 * 3 2 1 7 7 C 1.38813 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99714 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00140 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.46845 * 325.00681 * 10 9 7 12 12 C 1.53006 * 109.47249 * 84.99833 * 10 9 7 13 13 C 1.52997 * 109.47164 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46978 * 299.99874 * 13 12 10 15 15 H 1.08992 * 109.47056 * 300.00064 * 14 13 12 16 16 N 1.46505 * 109.46958 * 180.02562 * 14 13 12 17 17 C 1.34777 * 119.99797 * 84.99979 * 16 14 13 18 18 O 1.21578 * 120.00101 * 0.02562 * 17 16 14 19 19 C 1.47613 * 120.00008 * 179.97438 * 17 16 14 20 20 N 1.31876 * 126.45872 * 0.02839 * 19 17 16 21 21 N 1.28466 * 110.15432 * 179.97438 * 20 19 17 22 22 H 0.97002 * 124.92876 * 180.02562 * 21 20 19 23 23 C 1.35729 * 110.13330 * 0.02562 * 21 20 19 24 24 C 1.35538 * 107.11522 * 359.72172 * 23 21 20 25 25 F 1.35102 * 127.24018 * 180.25773 * 24 23 21 26 26 C 1.52996 * 109.46891 * 60.00410 * 14 13 12 27 27 C 1.52997 * 109.47473 * 205.00132 * 10 9 7 28 28 H 0.96998 * 120.00493 * 359.97438 * 1 2 3 29 29 H 0.97005 * 120.00486 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47002 * 60.00085 * 12 10 9 31 31 H 1.09000 * 109.47050 * 300.00351 * 12 10 9 32 32 H 1.09002 * 109.47045 * 180.02562 * 13 12 10 33 33 H 1.09001 * 109.47375 * 59.99966 * 13 12 10 34 34 H 0.97001 * 119.99745 * 265.00017 * 16 14 13 35 35 H 1.08001 * 126.43693 * 180.02562 * 23 21 20 36 36 H 1.09004 * 109.47368 * 179.97438 * 26 14 13 37 37 H 1.09001 * 109.47372 * 59.99964 * 26 14 13 38 38 H 1.09002 * 109.47153 * 59.99757 * 27 10 9 39 39 H 1.09001 * 109.46832 * 299.99948 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 1 2.9688 -3.5504 -0.5899 12 6 2.4220 -4.0356 1.4365 13 6 3.1875 -5.3603 1.4364 14 6 2.3107 -6.4559 0.8266 15 1 1.4001 -6.5625 1.4160 16 7 3.0435 -7.7245 0.8271 17 6 3.0344 -8.5075 1.9241 18 8 2.4178 -8.1613 2.9130 19 6 3.7723 -9.7860 1.9244 20 7 4.4788 -10.2833 0.9281 21 7 4.9885 -11.4127 1.2674 22 1 5.5472 -11.9636 0.6971 23 6 4.6318 -11.7229 2.5397 24 6 3.8598 -10.7068 2.9965 25 9 3.2910 -10.5970 4.2171 26 6 1.9469 -6.0771 -0.6103 27 6 1.1809 -4.7521 -0.6102 28 1 -0.4851 0.8400 0.0004 29 1 0.3555 -2.3881 -0.0005 30 1 1.5113 -4.1418 2.0260 31 1 3.0469 -3.2552 1.8708 32 1 3.4463 -5.6304 2.4602 33 1 4.0982 -5.2537 0.8471 34 1 3.5352 -8.0009 0.0380 35 1 4.9144 -12.6100 3.0870 36 1 1.3226 -6.8578 -1.0450 37 1 2.8576 -5.9705 -1.1997 38 1 0.9216 -4.4822 -1.6339 39 1 0.2702 -4.8583 -0.0207 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034732824.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:23:40 Heat of formation + Delta-G solvation = -6.016060 kcal Electronic energy + Delta-G solvation = -23318.169844 eV Core-core repulsion = 19597.703491 eV Total energy + Delta-G solvation = -3720.466353 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.139 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.92041 -43.09699 -39.80215 -37.84835 -34.83698 -33.14750 -32.18307 -31.03885 -30.46751 -30.34233 -27.44841 -24.69181 -23.36347 -22.35754 -22.22064 -21.00272 -20.35909 -19.53964 -19.17058 -17.47890 -16.89684 -16.76580 -16.31363 -16.14564 -15.35296 -15.13325 -14.91294 -14.60973 -14.35708 -13.86299 -13.68028 -13.50442 -13.00053 -12.94952 -12.50650 -11.98765 -11.76078 -11.50113 -11.40517 -11.00781 -10.79755 -10.72594 -10.64399 -10.19387 -10.09197 -10.06305 -10.02488 -9.70705 -9.55588 -9.39651 -8.93968 -8.80834 -6.89312 -5.71433 -2.99584 1.03835 1.40843 2.16780 2.94941 3.14129 3.46642 3.52203 3.54444 3.79283 4.14076 4.36338 4.63064 4.68410 4.86422 5.00180 5.10042 5.33575 5.56806 5.66646 5.73207 5.78393 5.87059 5.91582 5.93695 6.08119 6.27202 6.30304 6.30383 6.35616 6.53688 6.62170 6.69643 6.78278 7.04391 7.08838 7.21043 7.49262 7.75742 8.11470 8.47566 9.58510 10.17624 10.52142 11.51505 Molecular weight = 296.14amu Principal moments of inertia in cm(-1) A = 0.037330 B = 0.002658 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.881661 B =10530.830919 C =10676.060434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.132 4.132 13 C -0.124 4.124 14 C 0.145 3.855 15 H 0.090 0.910 16 N -0.708 5.708 17 C 0.598 3.402 18 O -0.520 6.520 19 C -0.026 4.026 20 N -0.233 5.233 21 N -0.370 5.370 22 H 0.457 0.543 23 C -0.039 4.039 24 C 0.038 3.962 25 F -0.098 7.098 26 C -0.118 4.118 27 C -0.120 4.120 28 H 0.254 0.746 29 H 0.383 0.617 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.404 0.596 35 H 0.199 0.801 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.865 -27.559 0.529 29.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.212 4.212 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.366 4.366 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.173 4.173 13 C -0.164 4.164 14 C 0.041 3.959 15 H 0.108 0.892 16 N -0.359 5.359 17 C 0.381 3.619 18 O -0.393 6.393 19 C -0.188 4.188 20 N -0.070 5.070 21 N -0.086 5.086 22 H 0.303 0.697 23 C -0.184 4.184 24 C 0.008 3.992 25 F -0.077 7.077 26 C -0.157 4.157 27 C -0.159 4.159 28 H 0.064 0.936 29 H 0.217 0.783 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.239 0.761 35 H 0.216 0.784 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.803 -26.873 0.213 28.964 hybrid contribution 0.452 0.227 0.488 0.703 sum 11.255 -26.647 0.700 28.934 Atomic orbital electron populations 1.69667 1.05083 1.25440 1.58037 1.24737 0.95501 0.97641 1.03274 0.86146 0.78787 0.84321 0.77137 1.20598 1.21961 1.21930 1.19291 0.90994 0.84162 1.42144 0.91182 1.42441 1.05804 0.99816 1.88534 1.20246 0.94290 0.85956 0.92811 0.93589 1.22225 0.99807 0.94455 1.00804 1.21911 0.98604 0.95318 1.00537 1.21196 0.95491 0.81384 0.97784 0.89163 1.45981 1.52687 1.21511 1.15706 1.16721 0.80124 0.81277 0.83789 1.90875 1.42835 1.72473 1.33127 1.22318 1.05271 0.99351 0.91874 1.73630 1.10840 0.97800 1.24765 1.43021 1.38436 1.15593 1.11567 0.69711 1.22692 1.04632 1.02650 0.88416 1.17208 1.02139 0.96232 0.83609 1.91559 1.82579 1.95745 1.37821 1.21756 1.00921 0.98307 0.94709 1.21761 0.98949 0.93401 1.01796 0.93628 0.78306 0.92404 0.91773 0.92250 0.92213 0.76150 0.78425 0.91787 0.91472 0.91327 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.57 13.06 55.49 0.72 -27.84 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.90 22.68 29.55 -169.99 -5.02 17.66 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 7 C -0.23 -6.56 9.93 -15.06 -0.15 -6.71 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.73 -18.31 5.12 -53.42 -0.27 -18.59 16 10 C 0.18 3.49 2.77 -67.93 -0.19 3.30 16 11 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 12 C -0.13 -2.45 5.50 -26.73 -0.15 -2.60 16 13 C -0.12 -1.92 5.49 -26.73 -0.15 -2.06 16 14 C 0.14 2.01 2.45 -67.93 -0.17 1.84 16 15 H 0.09 1.42 7.57 -51.93 -0.39 1.03 16 16 N -0.71 -8.64 5.07 -54.82 -0.28 -8.92 16 17 C 0.60 8.47 7.79 -12.43 -0.10 8.38 16 18 O -0.52 -9.35 16.33 5.30 0.09 -9.26 16 19 C -0.03 -0.30 7.13 -82.74 -0.59 -0.89 16 20 N -0.23 -2.01 11.91 33.43 0.40 -1.61 16 21 N -0.37 -1.76 6.86 30.63 0.21 -1.55 16 22 H 0.46 0.16 8.96 -190.44 -1.71 -1.54 16 23 C -0.04 -0.21 12.06 -16.79 -0.20 -0.42 16 24 C 0.04 0.40 8.03 -39.27 -0.32 0.08 16 25 F -0.10 -1.26 17.03 2.25 0.04 -1.22 16 26 C -0.12 -1.51 5.39 -26.71 -0.14 -1.65 16 27 C -0.12 -1.95 5.39 -26.71 -0.14 -2.09 16 28 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.38 10.30 7.80 -40.82 -0.32 9.98 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.40 3.97 8.32 -40.82 -0.34 3.63 16 35 H 0.20 0.26 8.06 -52.49 -0.42 -0.16 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 333.78 15.07 5.03 5.03 Total: -1.00 -35.35 333.78 -8.00 -43.36 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.53 Total: 6.32 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -2.39 Total: -3.38 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: 0.78 Total: -58.51 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.35 -8.00 -43.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034732824.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.339 kcal (2) G-P(sol) polarization free energy of solvation -35.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds