Wall clock time and date at job start Fri Apr 10 2020 20:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86806 * 119.99931 * 2 1 4 4 H 1.48501 * 109.46920 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46687 * 300.00094 * 3 2 1 6 6 H 1.48500 * 109.47076 * 60.00023 * 3 2 1 7 7 C 1.38813 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99714 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00140 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.46845 * 325.00681 * 10 9 7 12 12 C 1.53006 * 109.47249 * 84.99833 * 10 9 7 13 13 C 1.52997 * 109.47164 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46978 * 299.99874 * 13 12 10 15 15 H 1.08992 * 109.47056 * 300.00064 * 14 13 12 16 16 N 1.46505 * 109.46958 * 180.02562 * 14 13 12 17 17 C 1.34777 * 119.99797 * 84.99979 * 16 14 13 18 18 O 1.21578 * 120.00101 * 0.02562 * 17 16 14 19 19 C 1.47613 * 120.00008 * 179.97438 * 17 16 14 20 20 N 1.31876 * 126.45872 * 0.02839 * 19 17 16 21 21 N 1.28466 * 110.15432 * 179.97438 * 20 19 17 22 22 H 0.97002 * 124.92876 * 180.02562 * 21 20 19 23 23 C 1.35729 * 110.13330 * 0.02562 * 21 20 19 24 24 C 1.35538 * 107.11522 * 359.72172 * 23 21 20 25 25 F 1.35102 * 127.24018 * 180.25773 * 24 23 21 26 26 C 1.52996 * 109.46891 * 60.00410 * 14 13 12 27 27 C 1.52997 * 109.47473 * 205.00132 * 10 9 7 28 28 H 0.96998 * 120.00493 * 359.97438 * 1 2 3 29 29 H 0.97005 * 120.00486 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47002 * 60.00085 * 12 10 9 31 31 H 1.09000 * 109.47050 * 300.00351 * 12 10 9 32 32 H 1.09002 * 109.47045 * 180.02562 * 13 12 10 33 33 H 1.09001 * 109.47375 * 59.99966 * 13 12 10 34 34 H 0.97001 * 119.99745 * 265.00017 * 16 14 13 35 35 H 1.08001 * 126.43693 * 180.02562 * 23 21 20 36 36 H 1.09004 * 109.47368 * 179.97438 * 26 14 13 37 37 H 1.09001 * 109.47372 * 59.99964 * 26 14 13 38 38 H 1.09002 * 109.47153 * 59.99757 * 27 10 9 39 39 H 1.09001 * 109.46832 * 299.99948 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 1 2.9688 -3.5504 -0.5899 12 6 2.4220 -4.0356 1.4365 13 6 3.1875 -5.3603 1.4364 14 6 2.3107 -6.4559 0.8266 15 1 1.4001 -6.5625 1.4160 16 7 3.0435 -7.7245 0.8271 17 6 3.0344 -8.5075 1.9241 18 8 2.4178 -8.1613 2.9130 19 6 3.7723 -9.7860 1.9244 20 7 4.4788 -10.2833 0.9281 21 7 4.9885 -11.4127 1.2674 22 1 5.5472 -11.9636 0.6971 23 6 4.6318 -11.7229 2.5397 24 6 3.8598 -10.7068 2.9965 25 9 3.2910 -10.5970 4.2171 26 6 1.9469 -6.0771 -0.6103 27 6 1.1809 -4.7521 -0.6102 28 1 -0.4851 0.8400 0.0004 29 1 0.3555 -2.3881 -0.0005 30 1 1.5113 -4.1418 2.0260 31 1 3.0469 -3.2552 1.8708 32 1 3.4463 -5.6304 2.4602 33 1 4.0982 -5.2537 0.8471 34 1 3.5352 -8.0009 0.0380 35 1 4.9144 -12.6100 3.0870 36 1 1.3226 -6.8578 -1.0450 37 1 2.8576 -5.9705 -1.1997 38 1 0.9216 -4.4822 -1.6339 39 1 0.2702 -4.8583 -0.0207 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034732824.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:23:39 Heat of formation + Delta-G solvation = -33.158961 kcal Electronic energy + Delta-G solvation = -23319.346848 eV Core-core repulsion = 19597.703491 eV Total energy + Delta-G solvation = -3721.643358 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.139 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.71327 -43.71246 -40.95220 -39.21558 -36.39485 -34.72118 -33.13783 -32.20667 -31.68642 -31.57191 -29.00889 -26.00148 -24.94505 -23.62283 -22.98147 -22.28276 -21.43211 -20.83985 -19.88774 -19.10908 -18.23581 -17.47606 -17.33733 -16.95208 -16.83449 -16.08649 -16.02460 -15.81734 -15.44745 -15.35880 -15.23461 -15.00710 -14.59087 -14.03233 -13.60672 -13.46397 -13.15761 -13.08245 -12.85413 -12.45387 -12.32599 -12.16853 -12.09660 -12.02282 -11.68477 -11.48901 -11.27747 -11.17880 -10.84315 -10.69599 -10.12068 -9.99540 -8.98016 -7.92236 -5.20194 0.28030 0.79838 1.47368 1.48410 1.58189 1.69742 2.05603 2.14898 2.57633 3.02054 3.40706 3.53842 3.73636 3.81349 3.84533 3.89958 4.00443 4.29553 4.37659 4.40175 4.42450 4.54393 4.60299 4.66206 4.86551 5.00311 5.10128 5.13536 5.18086 5.26123 5.28658 5.43153 5.52451 5.56277 5.65023 5.91315 6.30782 6.38270 6.64310 7.11089 7.36095 8.13881 8.36348 9.31791 Molecular weight = 296.14amu Principal moments of inertia in cm(-1) A = 0.037330 B = 0.002658 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.881661 B =10530.830919 C =10676.060434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.297 1.297 7 C -0.234 4.234 8 H 0.075 0.925 9 N -0.739 5.739 10 C 0.172 3.828 11 H 0.049 0.951 12 C -0.122 4.122 13 C -0.113 4.113 14 C 0.151 3.849 15 H 0.068 0.932 16 N -0.693 5.693 17 C 0.594 3.406 18 O -0.570 6.570 19 C -0.058 4.058 20 N -0.231 5.231 21 N -0.341 5.341 22 H 0.479 0.521 23 C 0.008 3.992 24 C -0.012 4.012 25 F -0.122 7.122 26 C -0.104 4.104 27 C -0.113 4.113 28 H 0.250 0.750 29 H 0.371 0.629 30 H 0.040 0.960 31 H 0.042 0.958 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.419 0.581 35 H 0.248 0.752 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.393 -30.282 -0.862 33.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.800 3.200 4 H -0.190 1.190 5 H -0.220 1.220 6 H -0.224 1.224 7 C -0.366 4.366 8 H 0.093 0.907 9 N -0.378 5.378 10 C 0.064 3.936 11 H 0.067 0.933 12 C -0.163 4.163 13 C -0.152 4.152 14 C 0.047 3.953 15 H 0.086 0.914 16 N -0.344 5.344 17 C 0.379 3.621 18 O -0.447 6.447 19 C -0.218 4.218 20 N -0.070 5.070 21 N -0.061 5.061 22 H 0.331 0.669 23 C -0.138 4.138 24 C -0.042 4.042 25 F -0.101 7.101 26 C -0.143 4.143 27 C -0.152 4.152 28 H 0.058 0.942 29 H 0.203 0.797 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.256 0.744 35 H 0.264 0.736 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.406 -29.656 -1.237 32.569 hybrid contribution -0.246 0.917 0.908 1.314 sum 13.161 -28.739 -0.329 31.611 Atomic orbital electron populations 1.69824 1.06608 1.25827 1.60042 1.25550 0.96372 1.01052 1.04220 0.85109 0.78302 0.80055 0.76555 1.18979 1.21976 1.22404 1.19665 0.91397 0.85288 1.40205 0.90667 1.42683 1.05470 1.01141 1.88534 1.20491 0.94588 0.85018 0.93467 0.93300 1.22030 0.99020 0.95706 0.99581 1.21771 0.99026 0.93937 1.00463 1.20960 0.94454 0.81699 0.98206 0.91371 1.45756 1.52232 1.20480 1.15944 1.17134 0.79565 0.82177 0.83207 1.90840 1.45095 1.73888 1.34907 1.21950 1.07169 0.99076 0.93559 1.73565 1.10579 0.99027 1.23837 1.43236 1.36819 1.14359 1.11697 0.66942 1.23304 1.00850 1.01912 0.87779 1.17725 1.04949 0.98295 0.83244 1.91486 1.83369 1.96056 1.39157 1.21655 1.01839 0.96759 0.94022 1.21646 0.98374 0.93963 1.01175 0.94155 0.79705 0.94156 0.93963 0.93453 0.90454 0.74382 0.73604 0.89271 0.89283 0.91197 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.88 13.06 21.65 0.28 -60.60 16 2 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 3 Si 0.97 47.14 29.55 68.60 2.03 49.17 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 6 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 7 C -0.23 -13.19 9.93 84.03 0.83 -12.36 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 9 N -0.74 -38.04 5.12 -322.94 -1.65 -39.70 16 10 C 0.17 6.81 2.77 44.99 0.12 6.94 16 11 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 12 C -0.12 -4.67 5.50 30.60 0.17 -4.50 16 13 C -0.11 -3.45 5.49 30.59 0.17 -3.28 16 14 C 0.15 4.09 2.45 44.99 0.11 4.20 16 15 H 0.07 2.19 7.57 -2.39 -0.02 2.18 16 16 N -0.69 -16.11 5.07 -445.63 -2.26 -18.37 16 17 C 0.59 16.92 7.79 86.72 0.68 17.59 16 18 O -0.57 -21.47 16.33 -3.96 -0.06 -21.53 16 19 C -0.06 -1.27 7.13 42.44 0.30 -0.97 16 20 N -0.23 -3.34 11.91 -48.16 -0.57 -3.92 16 21 N -0.34 -1.83 6.86 -56.99 -0.39 -2.23 16 22 H 0.48 -2.06 8.96 -219.99 -1.97 -4.04 16 23 C 0.01 0.05 12.06 83.47 1.01 1.06 16 24 C -0.01 -0.24 8.03 22.47 0.18 -0.06 16 25 F -0.12 -3.17 17.03 44.97 0.77 -2.40 16 26 C -0.10 -2.42 5.39 30.61 0.17 -2.26 16 27 C -0.11 -3.57 5.39 30.61 0.17 -3.40 16 28 H 0.25 15.15 8.31 -92.71 -0.77 14.37 16 29 H 0.37 20.61 7.80 -92.70 -0.72 19.89 16 30 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.42 7.22 8.32 -92.71 -0.77 6.45 16 35 H 0.25 -0.79 8.06 -2.91 -0.02 -0.81 16 36 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -81.16 333.78 0.14 -81.02 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -2.36 Total: 19.84 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 4.37 Total: -1.28 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -4.60 Total: -124.81 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.06 Total: -21.53 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.77 Total: -2.40 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -81.16 0.14 -81.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034732824.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.858 kcal (2) G-P(sol) polarization free energy of solvation -81.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds