Wall clock time and date at job start Fri Apr 10 2020 20:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50694 * 109.46935 * 2 1 4 4 C 1.33817 * 124.52488 * 89.98491 * 3 2 1 5 5 C 1.37473 * 115.10448 * 180.02562 * 4 3 2 6 6 C 1.36647 * 113.29585 * 359.97438 * 5 4 3 7 7 C 1.46583 * 125.45774 * 180.02562 * 6 5 4 8 8 O 1.21696 * 120.00023 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99760 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99535 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.47009 * 324.99474 * 10 9 7 12 12 C 1.53001 * 109.47279 * 84.99891 * 10 9 7 13 13 C 1.53002 * 109.46595 * 204.99455 * 10 9 7 14 14 N 1.46497 * 109.47201 * 55.00300 * 13 10 9 15 15 C 1.46506 * 119.99922 * 269.99966 * 14 13 10 16 16 C 1.36943 * 120.00437 * 89.99397 * 14 13 10 17 17 H 1.08001 * 119.99313 * 23.66070 * 16 14 13 18 18 C 1.38806 * 120.00012 * 203.65688 * 16 14 13 19 19 N 1.31622 * 120.00352 * 11.25875 * 18 16 14 20 20 Si 1.86801 * 119.99701 * 191.25939 * 18 16 14 21 21 H 1.48501 * 109.47222 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47291 * 120.00133 * 20 18 16 23 23 H 1.48498 * 109.47059 * 239.99839 * 20 18 16 24 24 S 1.70618 * 124.52256 * 270.02013 * 3 2 1 25 25 H 1.08997 * 109.47212 * 300.00239 * 1 2 3 26 26 H 1.09002 * 109.46800 * 60.00440 * 1 2 3 27 27 H 1.09003 * 109.46945 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47212 * 239.99761 * 2 1 3 29 29 H 1.09002 * 109.46605 * 120.00076 * 2 1 3 30 30 H 1.08000 * 122.44875 * 0.03394 * 4 3 2 31 31 H 1.07999 * 123.35218 * 180.02562 * 5 4 3 32 32 H 0.96994 * 120.00037 * 359.97438 * 9 7 6 33 33 H 1.08995 * 109.47373 * 59.99325 * 12 10 9 34 34 H 1.08998 * 109.47019 * 179.97438 * 12 10 9 35 35 H 1.09004 * 109.46705 * 299.99758 * 12 10 9 36 36 H 1.09002 * 109.47055 * 175.00051 * 13 10 9 37 37 H 1.08993 * 109.47382 * 294.99973 * 13 10 9 38 38 H 1.08997 * 109.47302 * 94.59233 * 15 14 13 39 39 H 1.08998 * 109.47299 * 214.59743 * 15 14 13 40 40 H 1.09003 * 109.46632 * 334.59604 * 15 14 13 41 41 H 0.97000 * 119.99674 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2848 2.1359 1.1025 5 6 2.7364 3.4147 0.8775 6 6 2.8460 3.7235 -0.4491 7 6 3.3005 5.0086 -0.9883 8 8 3.6176 5.9078 -0.2321 9 7 3.3662 5.1946 -2.3216 10 6 3.8210 6.4788 -2.8604 11 1 3.4815 7.2859 -2.2112 12 6 5.3493 6.4897 -2.9313 13 6 3.2440 6.6760 -4.2637 14 7 1.7855 6.5467 -4.2147 15 6 1.1595 5.2362 -4.4076 16 6 1.0074 7.6505 -3.9883 17 1 1.3863 8.6350 -4.2201 18 6 -0.2683 7.5042 -3.4612 19 7 -0.6498 6.3426 -2.9738 20 14 -1.4438 8.9558 -3.4437 21 1 -0.7780 10.1393 -4.0449 22 1 -2.6585 8.6187 -4.2288 23 1 -1.8294 9.2637 -2.0431 24 16 2.3541 2.3326 -1.4057 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.1443 1.7375 2.0964 31 1 2.9809 4.1062 1.6703 32 1 3.1131 4.4780 -2.9243 33 1 5.6887 5.6826 -3.5804 34 1 5.6876 7.4450 -3.3326 35 1 5.7603 6.3491 -1.9316 36 1 3.5086 7.6682 -4.6292 37 1 3.6534 5.9207 -4.9344 38 1 0.9791 4.7733 -3.4375 39 1 0.2125 5.3598 -4.9330 40 1 1.8212 4.6006 -4.9961 41 1 -1.5414 6.2403 -2.6058 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754315745.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:24:40 Heat of formation + Delta-G solvation = 6.269650 kcal Electronic energy + Delta-G solvation = -22160.527010 eV Core-core repulsion = 18974.513830 eV Total energy + Delta-G solvation = -3186.013180 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.30568 -37.80348 -36.24238 -33.99861 -33.68971 -31.35352 -30.33422 -28.37446 -26.16778 -25.62043 -25.11380 -22.49054 -22.06442 -21.01608 -19.99321 -18.85501 -17.63033 -16.77582 -15.94636 -15.47076 -14.93907 -14.75675 -14.45495 -14.20835 -13.78191 -13.59093 -13.36084 -13.18256 -12.87797 -12.68431 -12.22180 -12.14138 -12.04825 -11.71915 -11.53876 -11.42269 -11.16923 -11.06583 -10.83999 -10.76329 -10.67120 -10.53397 -10.19126 -9.93286 -9.84447 -9.46131 -8.63633 -8.51043 -8.38512 -8.27938 -6.72758 -5.70513 -3.17075 0.75824 1.66318 2.08890 2.62312 3.39918 3.47393 3.49055 3.65477 3.85753 4.52633 4.64262 4.92588 5.16182 5.24052 5.35691 5.38838 5.50978 5.54205 5.65869 5.69693 5.70918 5.86136 5.86787 6.00948 6.10043 6.11289 6.15525 6.24692 6.35261 6.48793 6.53216 6.56221 6.65169 6.89585 7.16414 7.32557 7.68075 7.82947 8.09091 8.41137 8.77349 9.24799 9.87035 10.35360 11.34499 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.013858 B = 0.005365 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.986047 B = 5217.548268 C = 6211.256184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.051 4.051 3 C -0.205 4.205 4 C -0.152 4.152 5 C -0.067 4.067 6 C -0.247 4.247 7 C 0.592 3.408 8 O -0.542 6.542 9 N -0.693 5.693 10 C 0.117 3.883 11 H 0.088 0.912 12 C -0.159 4.159 13 C 0.142 3.858 14 N -0.597 5.597 15 C 0.160 3.840 16 C -0.256 4.256 17 H 0.068 0.932 18 C 0.006 3.994 19 N -0.902 5.902 20 Si 0.903 3.097 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.291 1.291 24 S 0.210 5.790 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.139 0.861 31 H 0.149 0.851 32 H 0.392 0.608 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.041 0.959 38 H 0.033 0.967 39 H 0.043 0.957 40 H -0.006 1.006 41 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.176 -13.104 3.007 15.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.091 4.091 3 C -0.325 4.325 4 C -0.183 4.183 5 C -0.099 4.099 6 C -0.367 4.367 7 C 0.377 3.623 8 O -0.422 6.422 9 N -0.341 5.341 10 C 0.009 3.991 11 H 0.106 0.894 12 C -0.218 4.218 13 C 0.014 3.986 14 N -0.320 5.320 15 C 0.015 3.985 16 C -0.386 4.386 17 H 0.086 0.914 18 C -0.193 4.193 19 N -0.547 5.547 20 Si 0.733 3.267 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.218 1.218 24 S 0.478 5.522 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.156 0.844 31 H 0.166 0.834 32 H 0.226 0.774 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.012 0.988 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.115 -12.779 1.984 14.760 hybrid contribution -0.930 0.701 1.582 1.964 sum 6.184 -12.078 3.566 14.030 Atomic orbital electron populations 1.21817 0.94135 1.01851 1.02990 1.20095 0.96359 0.89553 1.03054 1.24207 1.08159 1.02016 0.98140 1.19859 1.04977 0.94206 0.99245 1.20662 0.97870 0.96138 0.95260 1.24736 1.14542 0.99552 0.97913 1.16847 0.77431 0.85254 0.82748 1.90762 1.50526 1.42645 1.58249 1.45670 1.66382 1.16577 1.05510 1.21927 0.92022 0.85609 0.99502 0.89409 1.22160 0.96782 1.01418 1.01490 1.21212 0.85655 0.99766 0.91987 1.43899 0.99061 1.05936 1.83056 1.20874 0.94826 0.84850 0.97948 1.19204 0.96277 0.86901 1.36218 0.91374 1.25029 0.99176 0.96804 0.98297 1.70049 1.18849 1.22904 1.42882 0.86211 0.81083 0.82164 0.77228 1.20337 1.21712 1.21795 1.83000 1.59492 1.02258 1.07434 0.92202 0.92049 0.92134 0.90840 0.90173 0.84371 0.83357 0.77368 0.93164 0.91936 0.92897 0.92112 0.94020 0.94897 0.93775 0.98778 0.93924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.89 37.16 0.37 -1.05 16 2 C -0.05 -0.49 6.36 -27.88 -0.18 -0.67 16 3 C -0.21 -2.60 5.53 -35.86 -0.20 -2.80 16 4 C -0.15 -2.00 9.99 -41.41 -0.41 -2.42 16 5 C -0.07 -1.06 10.01 -40.44 -0.40 -1.47 16 6 C -0.25 -4.38 6.45 -36.79 -0.24 -4.62 16 7 C 0.59 12.30 7.75 -12.89 -0.10 12.20 16 8 O -0.54 -12.87 16.50 5.19 0.09 -12.79 16 9 N -0.69 -13.48 4.41 -55.14 -0.24 -13.72 16 10 C 0.12 2.26 2.88 -67.93 -0.20 2.07 16 11 H 0.09 2.04 7.57 -51.93 -0.39 1.65 16 12 C -0.16 -2.47 9.48 37.16 0.35 -2.12 16 13 C 0.14 2.80 5.33 -4.04 -0.02 2.77 16 14 N -0.60 -14.51 2.78 -181.12 -0.50 -15.02 16 15 C 0.16 3.74 7.61 59.85 0.46 4.20 16 16 C -0.26 -7.00 9.66 -15.06 -0.15 -7.14 16 17 H 0.07 1.84 7.85 -52.49 -0.41 1.42 16 18 C 0.01 0.16 5.13 -17.43 -0.09 0.07 16 19 N -0.90 -26.15 10.66 55.49 0.59 -25.55 16 20 Si 0.90 22.25 29.57 -169.99 -5.03 17.22 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 S 0.21 3.02 22.10 -107.50 -2.38 0.65 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 31 H 0.15 2.30 8.06 -52.49 -0.42 1.88 16 32 H 0.39 7.11 6.29 -40.82 -0.26 6.85 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 1.15 8.03 -51.93 -0.42 0.74 16 37 H 0.04 0.72 7.86 -51.93 -0.41 0.31 16 38 H 0.03 0.82 6.90 -51.93 -0.36 0.46 16 39 H 0.04 1.13 7.30 -51.93 -0.38 0.75 16 40 H -0.01 -0.13 7.84 -51.93 -0.41 -0.53 16 41 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 352.64 15.07 5.31 5.31 Total: -1.00 -32.10 352.64 -9.36 -41.46 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -6.39 Total: 3.42 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -0.81 Total: -0.98 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.15 Total: -54.29 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.09 Total: -12.79 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -2.38 Total: 0.65 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.10 -9.36 -41.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754315745.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.731 kcal (2) G-P(sol) polarization free energy of solvation -32.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds