Wall clock time and date at job start Fri Apr 10 2020 20:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.58703 * 2 1 4 4 C 1.53186 * 109.58938 * 239.57246 * 2 1 3 5 5 H 1.08998 * 109.50142 * 65.59290 * 4 2 1 6 6 N 1.46508 * 109.49794 * 305.52781 * 4 2 1 7 7 C 1.34773 * 120.00391 * 155.00341 * 6 4 2 8 8 O 1.21590 * 119.99597 * 359.97438 * 7 6 4 9 9 C 1.47615 * 120.00167 * 180.02562 * 7 6 4 10 10 N 1.31870 * 126.45561 * 0.02562 * 9 7 6 11 11 N 1.28477 * 110.15061 * 180.02562 * 10 9 7 12 12 H 0.96997 * 124.92973 * 180.02562 * 11 10 9 13 13 C 1.35728 * 110.13370 * 0.02562 * 11 10 9 14 14 C 1.35547 * 107.11688 * 359.72662 * 13 11 10 15 15 F 1.35096 * 127.24148 * 180.26322 * 14 13 11 16 16 C 1.53038 * 109.31470 * 185.57799 * 4 2 1 17 17 C 1.53041 * 109.54002 * 61.36000 * 16 4 2 18 18 C 1.53192 * 109.31598 * 298.64075 * 17 16 4 19 19 N 1.46925 * 108.77339 * 54.62886 * 18 17 16 20 20 C 1.36940 * 120.62770 * 126.37386 * 19 18 17 21 21 H 1.07994 * 119.99972 * 209.01550 * 20 19 18 22 22 C 1.38811 * 119.99919 * 29.01442 * 20 19 18 23 23 N 1.31622 * 119.99967 * 15.03761 * 22 20 19 24 24 Si 1.86800 * 120.00071 * 195.03103 * 22 20 19 25 25 H 1.48495 * 109.46912 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46815 * 120.00067 * 24 22 20 27 27 H 1.48497 * 109.47599 * 240.00136 * 24 22 20 28 28 H 1.08995 * 109.47267 * 299.72152 * 1 2 3 29 29 H 1.09007 * 109.47161 * 59.72384 * 1 2 3 30 30 H 1.09001 * 109.46777 * 179.71527 * 1 2 3 31 31 H 0.97003 * 119.99696 * 335.00058 * 6 4 2 32 32 H 1.07997 * 126.44089 * 179.97438 * 13 11 10 33 33 H 1.09004 * 109.46243 * 301.34444 * 16 4 2 34 34 H 1.09002 * 109.46531 * 181.38302 * 16 4 2 35 35 H 1.08999 * 109.50101 * 178.67930 * 17 16 4 36 36 H 1.09008 * 109.49335 * 58.58819 * 17 16 4 37 37 H 1.08994 * 109.58758 * 174.42186 * 18 17 16 38 38 H 1.08998 * 109.58143 * 294.70226 * 18 17 16 39 39 H 0.96998 * 119.99685 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7309 -1.2444 5 1 1.7656 -0.1698 -2.1366 6 7 1.4514 -2.0697 -1.3045 7 6 1.3285 -2.6997 -2.4895 8 8 1.7087 -2.1568 -3.5089 9 6 0.7314 -4.0483 -2.5500 10 7 0.2780 -4.7510 -1.5304 11 7 -0.1739 -5.8822 -1.9385 12 1 -0.5582 -6.5655 -1.3673 13 6 -0.0355 -5.9823 -3.2850 14 6 0.5334 -4.8294 -3.7144 15 9 0.8478 -4.4967 -4.9854 16 6 3.5675 -0.8494 -1.1690 17 6 3.9570 -1.6655 0.0657 18 6 3.4650 -0.9452 1.3251 19 7 2.0225 -0.6980 1.1954 20 6 1.1536 -1.1107 2.1700 21 1 0.1360 -1.3655 1.9135 22 6 1.5808 -1.2016 3.4876 23 7 2.7038 -0.6227 3.8567 24 14 0.5619 -2.1453 4.7369 25 1 -0.6462 -2.6984 4.0738 26 1 1.3713 -3.2571 5.2972 27 1 0.1510 -1.2311 5.8326 28 1 -0.3633 0.5095 0.8924 29 1 -0.3634 0.5181 -0.8875 30 1 -0.3633 -1.0277 -0.0051 31 1 1.1479 -2.5026 -0.4912 32 1 -0.3277 -6.8211 -3.8993 33 1 4.0062 0.1460 -1.0994 34 1 3.9379 -1.3474 -2.0650 35 1 5.0412 -1.7694 0.1061 36 1 3.4983 -2.6527 0.0087 37 1 3.6518 -1.5688 2.1992 38 1 3.9921 0.0028 1.4331 39 1 3.0021 -0.6859 4.7775 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993742607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:24:57 Heat of formation + Delta-G solvation = 17.515727 kcal Electronic energy + Delta-G solvation = -24923.949075 eV Core-core repulsion = 21204.503137 eV Total energy + Delta-G solvation = -3719.445938 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.139 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.66509 -42.75668 -39.51886 -37.46469 -33.91748 -32.54246 -32.01054 -31.41433 -30.65743 -29.28027 -26.32593 -25.02856 -24.25922 -22.18121 -21.69837 -20.76311 -20.14152 -18.99907 -18.60444 -17.12463 -16.47703 -16.37173 -15.98655 -15.38824 -15.20010 -14.74448 -14.70059 -14.40693 -14.03017 -13.80917 -13.37159 -13.04619 -12.94583 -12.62461 -12.53412 -11.82658 -11.25503 -11.20861 -11.11179 -10.96794 -10.68551 -10.59771 -10.47628 -10.08656 -9.98419 -9.80320 -9.70635 -9.61580 -9.27434 -9.09585 -8.52673 -8.41748 -6.65963 -5.79287 -3.24022 1.41384 1.71919 2.50588 3.34484 3.42344 3.43189 3.44049 3.54446 4.18349 4.45448 4.47132 4.66868 5.01359 5.27581 5.34385 5.36748 5.60771 5.65028 5.78731 6.00155 6.15578 6.20688 6.26124 6.36431 6.45369 6.56717 6.61696 6.71083 6.71743 6.81535 6.97092 7.00064 7.11840 7.41678 7.47015 7.70172 7.80611 8.06038 8.43952 8.59148 9.20186 9.83134 10.39975 11.28662 Molecular weight = 296.14amu Principal moments of inertia in cm(-1) A = 0.016792 B = 0.005358 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.078711 B = 5224.531602 C = 6161.874623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.159 3.841 3 H 0.042 0.958 4 C 0.133 3.867 5 H 0.079 0.921 6 N -0.682 5.682 7 C 0.593 3.407 8 O -0.539 6.539 9 C -0.024 4.024 10 N -0.224 5.224 11 N -0.371 5.371 12 H 0.456 0.544 13 C -0.043 4.043 14 C 0.034 3.966 15 F -0.102 7.102 16 C -0.121 4.121 17 C -0.141 4.141 18 C 0.171 3.829 19 N -0.586 5.586 20 C -0.251 4.251 21 H 0.071 0.929 22 C 0.004 3.996 23 N -0.901 5.901 24 Si 0.899 3.101 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.291 1.291 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.054 0.946 31 H 0.416 0.584 32 H 0.196 0.804 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.088 0.912 38 H 0.018 0.982 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.741 -9.932 -11.135 15.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.052 3.948 3 H 0.059 0.941 4 C 0.027 3.973 5 H 0.097 0.903 6 N -0.333 5.333 7 C 0.376 3.624 8 O -0.415 6.415 9 C -0.186 4.186 10 N -0.060 5.060 11 N -0.088 5.088 12 H 0.302 0.698 13 C -0.188 4.188 14 C 0.004 3.996 15 F -0.080 7.080 16 C -0.160 4.160 17 C -0.180 4.180 18 C 0.045 3.955 19 N -0.310 5.310 20 C -0.380 4.380 21 H 0.089 0.911 22 C -0.194 4.194 23 N -0.545 5.545 24 Si 0.729 3.271 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.219 1.219 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.253 0.747 32 H 0.213 0.787 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.036 0.964 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.513 -9.413 -10.574 14.859 hybrid contribution -0.592 -1.162 0.321 1.343 sum -5.105 -10.575 -10.253 15.589 Atomic orbital electron populations 1.21800 0.95628 1.01534 1.00504 1.20725 0.93399 0.93950 0.86727 0.94066 1.21626 0.93049 0.82595 1.00066 0.90320 1.45865 1.60301 1.18376 1.08756 1.16762 0.78770 0.82395 0.84491 1.90800 1.50584 1.65738 1.34423 1.22400 1.08265 0.98475 0.89480 1.73796 1.12421 0.94412 1.25414 1.43071 1.45162 1.14253 1.06268 0.69812 1.22632 1.08587 1.01250 0.86354 1.17206 1.06960 0.94649 0.80776 1.91525 1.91071 1.92192 1.33242 1.21780 0.95297 1.00576 0.98349 1.22153 0.98937 0.99642 0.97305 1.20811 0.83091 0.97187 0.94385 1.44168 1.03139 1.64947 1.18698 1.19207 0.94803 1.37785 0.86254 0.91124 1.25076 0.97732 0.99675 0.96949 1.70029 1.23283 1.44495 1.16720 0.86273 0.79660 0.79521 0.81599 1.20278 1.21729 1.21852 0.91726 0.94142 0.92731 0.74671 0.78685 0.91744 0.93013 0.93444 0.92833 0.89426 0.96391 0.93763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 7.73 37.16 0.29 -2.24 16 2 C 0.16 3.18 3.20 -67.60 -0.22 2.97 16 3 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 4 C 0.13 2.44 2.33 -67.81 -0.16 2.28 16 5 H 0.08 1.44 7.58 -51.93 -0.39 1.04 16 6 N -0.68 -12.33 3.45 -54.70 -0.19 -12.52 16 7 C 0.59 10.84 7.79 -12.44 -0.10 10.75 16 8 O -0.54 -11.17 16.33 5.29 0.09 -11.08 16 9 C -0.02 -0.37 7.13 -82.74 -0.59 -0.96 16 10 N -0.22 -3.06 11.91 33.43 0.40 -2.66 16 11 N -0.37 -3.31 6.86 30.64 0.21 -3.10 16 12 H 0.46 2.09 8.96 -190.44 -1.71 0.39 16 13 C -0.04 -0.38 12.06 -16.79 -0.20 -0.58 16 14 C 0.03 0.47 8.03 -39.26 -0.32 0.15 16 15 F -0.10 -1.54 17.03 2.25 0.04 -1.50 16 16 C -0.12 -2.21 5.58 -26.69 -0.15 -2.36 16 17 C -0.14 -2.74 5.93 -26.61 -0.16 -2.90 16 18 C 0.17 3.93 5.29 -3.71 -0.02 3.91 16 19 N -0.59 -13.58 2.65 -164.78 -0.44 -14.02 16 20 C -0.25 -6.34 8.60 -15.06 -0.13 -6.47 16 21 H 0.07 1.75 6.21 -52.49 -0.33 1.42 16 22 C 0.00 0.12 4.96 -17.43 -0.09 0.03 16 23 N -0.90 -25.21 11.14 55.49 0.62 -24.59 16 24 Si 0.90 20.90 29.58 -169.99 -5.03 15.87 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H 0.06 1.27 7.62 -51.93 -0.40 0.87 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 1.01 6.40 -51.93 -0.33 0.68 16 31 H 0.42 7.83 7.49 -40.82 -0.31 7.52 16 32 H 0.20 0.82 8.06 -52.49 -0.42 0.39 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 1.07 7.53 -51.92 -0.39 0.68 16 37 H 0.09 2.27 6.06 -51.93 -0.31 1.96 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 321.95 15.07 4.85 4.85 Total: -1.00 -31.63 321.95 -7.54 -39.17 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.26 Total: 5.00 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -1.83 Total: 4.57 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.60 Total: -56.89 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.63 -7.54 -39.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993742607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.688 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds