Wall clock time and date at job start Fri Apr 10 2020 20:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50707 * 109.47009 * 65.00166 * 4 2 1 6 6 H 1.07996 * 119.99521 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00339 * 180.02562 * 5 4 2 8 8 N 1.31521 * 120.00003 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00392 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47137 * 89.99320 * 9 7 5 11 11 H 1.48501 * 109.47453 * 209.99503 * 9 7 5 12 12 H 1.48500 * 109.46737 * 329.99669 * 9 7 5 13 13 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 14 14 N 1.46895 * 109.46799 * 294.99463 * 13 2 1 15 15 C 1.46907 * 111.00034 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47094 * 300.00522 * 15 14 13 17 17 C 1.52997 * 109.46694 * 60.00524 * 15 14 13 18 18 C 1.50701 * 109.46981 * 180.02562 * 15 14 13 19 19 N 1.29998 * 127.34356 * 0.02562 * 18 15 14 20 20 O 1.20655 * 112.32349 * 180.02562 * 19 18 15 21 21 C 1.33463 * 113.17443 * 0.02562 * 20 19 18 22 22 C 1.37438 * 106.32966 * 359.71519 * 21 20 19 23 23 C 1.47258 * 128.57402 * 180.25294 * 22 21 20 24 24 O 1.21536 * 119.99561 * 180.18132 * 23 22 21 25 25 O 1.34754 * 120.00074 * 0.18389 * 23 22 21 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 30 30 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 31 31 H 0.96995 * 120.00234 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47326 * 54.99931 * 13 2 1 33 33 H 1.09000 * 109.46904 * 175.00284 * 13 2 1 34 34 H 1.00909 * 110.99954 * 56.04982 * 14 13 2 35 35 H 1.09002 * 109.47325 * 59.99241 * 16 15 14 36 36 H 1.08992 * 109.47363 * 179.97438 * 16 15 14 37 37 H 1.09003 * 109.46973 * 299.99911 * 16 15 14 38 38 H 1.08994 * 109.47224 * 60.00000 * 17 15 14 39 39 H 1.09002 * 109.46675 * 180.02562 * 17 15 14 40 40 H 1.09008 * 109.46979 * 299.99486 * 17 15 14 41 41 H 1.08000 * 126.83585 * 179.97438 * 21 20 19 42 42 H 0.96700 * 116.99934 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 2.6756 -1.5194 -3.8512 9 14 1.4989 0.5628 -5.2497 10 1 2.5650 1.5416 -5.5823 11 1 1.3112 -0.3710 -6.3890 12 1 0.2282 1.2850 -4.9870 13 6 2.0400 -0.7213 1.2493 14 7 1.6515 0.0374 2.4456 15 6 2.1248 -0.6271 3.6673 16 6 1.5150 -2.0276 3.7549 17 6 3.6504 -0.7365 3.6298 18 6 1.7078 0.1781 4.8709 19 7 1.0349 1.2904 4.8810 20 8 0.8505 1.7043 5.9992 21 6 1.3802 0.9228 6.9426 22 6 1.9713 -0.1296 6.2855 23 6 2.6930 -1.2795 6.8560 24 8 3.1613 -2.1277 6.1223 25 8 2.8340 -1.3913 8.1914 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1263 -0.7996 -1.2055 30 1 1.6054 -1.7198 -1.2952 31 1 2.9228 -1.8423 -4.7318 32 1 1.6054 -1.7199 1.2952 33 1 3.1263 -0.7995 1.2056 34 1 0.6528 0.1793 2.4753 35 1 1.8162 -2.6102 2.8843 36 1 1.8665 -2.5209 4.6611 37 1 0.4281 -1.9496 3.7816 38 1 4.0848 0.2612 3.5673 39 1 4.0016 -1.2300 4.5360 40 1 3.9516 -1.3192 2.7592 41 1 1.3469 1.0831 8.0101 42 1 3.3151 -2.1636 8.5190 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604130310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:25:44 Heat of formation + Delta-G solvation = -36.397455 kcal Electronic energy + Delta-G solvation = -24318.153097 eV Core-core repulsion = 20687.536861 eV Total energy + Delta-G solvation = -3630.616235 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.24998 -40.43084 -38.45982 -36.51544 -35.33315 -33.45549 -32.38305 -32.02974 -29.74324 -27.28369 -26.74032 -26.24310 -25.38483 -23.51841 -22.21408 -21.72975 -19.67824 -18.98429 -18.51221 -18.12877 -17.97914 -16.77634 -16.30050 -16.00290 -15.55936 -14.93739 -14.51615 -14.36851 -14.18347 -13.71574 -13.43903 -13.03845 -12.80964 -12.57336 -12.36015 -12.00854 -11.88233 -11.59095 -11.52114 -11.34547 -11.26343 -11.15141 -10.86665 -10.75612 -10.63417 -10.32675 -10.28694 -10.11705 -10.05182 -9.65465 -9.11170 -8.92342 -8.28859 -8.10569 -5.93711 -3.94549 0.51667 1.54682 2.26434 2.49613 2.94748 3.36106 3.42114 3.45644 3.70718 3.77417 4.41659 4.51037 4.62035 4.90787 4.99252 5.10809 5.15094 5.38926 5.42087 5.65310 5.77560 5.81934 5.84441 5.85738 5.99741 6.08613 6.12971 6.22816 6.35003 6.43139 6.52939 6.63966 6.99453 7.16013 7.22426 7.36094 7.45935 7.65744 7.74677 7.91034 7.99351 8.06935 8.51049 9.11808 9.68621 11.17860 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.031129 B = 0.003029 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.257473 B = 9240.448836 C = 9821.085857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.083 4.083 3 H 0.065 0.935 4 C 0.029 3.971 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.061 3.939 14 N -0.675 5.675 15 C 0.191 3.809 16 C -0.187 4.187 17 C -0.144 4.144 18 C 0.095 3.905 19 N -0.330 5.330 20 O 0.100 5.900 21 C 0.022 3.978 22 C -0.251 4.251 23 C 0.562 3.438 24 O -0.488 6.488 25 O -0.513 6.513 26 H 0.062 0.938 27 H 0.031 0.969 28 H 0.040 0.960 29 H 0.015 0.985 30 H 0.014 0.986 31 H 0.259 0.741 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.342 0.658 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.232 0.768 42 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.305 0.843 27.569 27.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.102 4.102 3 H 0.084 0.916 4 C -0.009 4.009 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.067 4.067 14 N -0.307 5.307 15 C 0.098 3.902 16 C -0.246 4.246 17 C -0.202 4.202 18 C -0.069 4.069 19 N -0.035 5.035 20 O 0.042 5.958 21 C -0.060 4.060 22 C -0.257 4.257 23 C 0.405 3.595 24 O -0.377 6.377 25 O -0.326 6.326 26 H 0.081 0.919 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.162 0.838 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.249 0.751 42 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -1.329 2.083 26.109 26.225 hybrid contribution -0.158 -1.375 -0.113 1.388 sum -1.487 0.708 25.996 26.048 Atomic orbital electron populations 1.21741 0.96739 1.00364 1.00278 1.21220 0.94838 1.00130 0.94036 0.91637 1.19102 0.96120 0.95341 0.90307 1.21245 1.34525 1.08225 0.90989 0.92575 1.25017 0.95393 0.95084 0.99071 1.69968 1.39195 1.21231 1.23328 0.86632 0.78925 0.79810 0.82863 1.20736 1.21353 1.19927 1.22274 1.00755 0.94780 0.88916 1.60710 1.19997 1.49632 1.00377 1.19212 0.96602 0.89534 0.84827 1.22671 1.00195 0.96995 1.04743 1.22011 0.91837 1.02613 1.03716 1.24850 0.96007 0.92481 0.93569 1.73836 1.17879 1.12753 0.99032 1.84693 1.57459 1.43235 1.10461 1.26648 0.92539 0.89158 0.97701 1.21127 1.11962 0.99379 0.93234 1.19152 0.76584 0.83707 0.80033 1.90871 1.45668 1.40976 1.60145 1.84508 1.72897 1.51591 1.23595 0.91859 0.95005 0.94073 0.96656 0.96747 0.93138 0.95164 0.90913 0.83841 0.90705 0.89871 0.93186 0.92206 0.90367 0.90999 0.75137 0.72065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 8.77 37.16 0.33 -2.29 16 2 C -0.08 -1.77 2.55 -90.62 -0.23 -2.00 16 3 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 4 C 0.03 0.75 4.45 -27.88 -0.12 0.63 16 5 C -0.51 -14.60 8.41 -34.44 -0.29 -14.89 16 6 H 0.06 1.57 7.05 -52.49 -0.37 1.20 16 7 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 9 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.06 1.10 4.36 -3.82 -0.02 1.08 16 14 N -0.68 -10.95 5.89 -101.13 -0.60 -11.54 16 15 C 0.19 2.71 0.69 -132.75 -0.09 2.62 16 16 C -0.19 -2.52 8.07 37.16 0.30 -2.22 16 17 C -0.14 -2.02 8.08 37.16 0.30 -1.72 16 18 C 0.09 1.23 5.86 -79.75 -0.47 0.76 16 19 N -0.33 -4.36 11.63 34.79 0.40 -3.95 16 20 O 0.10 0.99 11.06 18.73 0.21 1.20 16 21 C 0.02 0.15 12.24 30.44 0.37 0.52 16 22 C -0.25 -2.47 6.33 -102.91 -0.65 -3.12 16 23 C 0.56 5.06 8.17 34.40 0.28 5.34 16 24 O -0.49 -5.63 11.84 -19.29 -0.23 -5.86 16 25 O -0.51 -2.66 13.34 -40.64 -0.54 -3.21 16 26 H 0.06 1.33 6.95 -51.93 -0.36 0.97 16 27 H 0.03 0.54 6.68 -51.93 -0.35 0.19 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.03 0.54 6.30 -51.93 -0.33 0.21 16 33 H 0.07 1.35 6.30 -51.93 -0.33 1.02 16 34 H 0.34 5.54 6.87 -39.29 -0.27 5.27 16 35 H 0.07 1.06 6.40 -51.93 -0.33 0.72 16 36 H 0.08 1.09 5.05 -51.93 -0.26 0.83 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.04 5.12 -51.93 -0.27 0.78 16 40 H 0.07 1.04 6.41 -51.92 -0.33 0.71 16 41 H 0.23 0.41 8.06 -52.49 -0.42 -0.02 16 42 H 0.42 0.41 9.11 45.56 0.42 0.82 16 LS Contribution 338.80 15.07 5.11 5.11 Total: -1.00 -33.97 338.80 -5.20 -39.17 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -4.87 Total: 2.44 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -0.39 Total: -13.79 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.55 Total: -42.13 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -0.56 Total: -7.87 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.97 -5.20 -39.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604130310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.774 kcal (2) G-P(sol) polarization free energy of solvation -33.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds