Wall clock time and date at job start Fri Apr 10 2020 20:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35601 * 116.99463 * 2 1 4 4 C 1.38515 * 120.08648 * 0.02562 * 3 2 1 5 5 C 1.38026 * 120.30868 * 180.02562 * 4 3 2 6 6 C 1.39931 * 120.47471 * 359.96734 * 5 4 3 7 7 C 1.48363 * 119.92373 * 180.02562 * 6 5 4 8 8 C 1.39373 * 120.12495 * 130.27770 * 7 6 5 9 9 C 1.37993 * 119.87519 * 180.27199 * 8 7 6 10 10 C 1.38339 * 120.12512 * 359.70677 * 9 8 7 11 11 C 1.38303 * 120.24876 * 0.02562 * 10 9 8 12 12 C 1.38033 * 120.12046 * 359.97438 * 11 10 9 13 13 C 1.50705 * 120.06388 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.46929 * 300.00146 * 13 12 11 15 15 C 1.53004 * 109.47091 * 59.99795 * 13 12 11 16 16 C 1.38616 * 120.15546 * 0.30308 * 6 5 4 17 17 C 1.40526 * 119.68995 * 359.45806 * 16 6 5 18 18 C 1.41188 * 120.23399 * 180.27182 * 17 16 6 19 19 H 1.07992 * 120.00309 * 204.84618 * 18 17 16 20 20 C 1.39910 * 119.99554 * 24.84072 * 18 17 16 21 21 N 1.30878 * 119.99981 * 17.62635 * 20 18 17 22 22 Si 1.86797 * 119.99794 * 197.61998 * 20 18 17 23 23 H 1.48498 * 109.47050 * 60.00290 * 22 20 18 24 24 H 1.48501 * 109.47164 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47320 * 300.00447 * 22 20 18 26 26 H 1.09006 * 109.46637 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47374 * 299.99637 * 1 2 3 28 28 H 1.08994 * 109.47455 * 60.00025 * 1 2 3 29 29 H 1.08004 * 119.84492 * 0.03326 * 4 3 2 30 30 H 1.08004 * 119.76363 * 179.97438 * 5 4 3 31 31 H 1.07998 * 120.06333 * 0.02562 * 8 7 6 32 32 H 1.08007 * 119.93352 * 179.72372 * 9 8 7 33 33 H 1.08003 * 119.87761 * 180.02562 * 10 9 8 34 34 H 1.08001 * 119.93975 * 179.97438 * 11 10 9 35 35 H 1.08997 * 109.47247 * 179.97438 * 13 12 11 36 36 H 1.08998 * 109.46731 * 179.97438 * 14 13 12 37 37 H 1.08997 * 109.47292 * 59.99861 * 14 13 12 38 38 H 1.09002 * 109.46956 * 299.99614 * 14 13 12 39 39 H 1.08998 * 109.46915 * 60.00241 * 15 13 12 40 40 H 1.08998 * 109.46825 * 180.02562 * 15 13 12 41 41 H 1.08997 * 109.47225 * 300.00198 * 15 13 12 42 42 H 1.08003 * 120.15909 * 179.72113 * 16 6 5 43 43 H 0.97004 * 119.99716 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2083 0.0000 4 6 1.2918 2.3710 0.0005 5 6 1.9135 3.6033 0.0000 6 6 3.3099 3.6937 -0.0004 7 6 3.9654 5.0246 -0.0004 8 6 4.9739 5.3077 0.9191 9 6 5.5762 6.5492 0.9181 10 6 5.1850 7.5100 0.0030 11 6 4.1887 7.2328 -0.9153 12 6 3.5793 5.9943 -0.9235 13 6 2.4934 5.6939 -1.9243 14 6 1.3346 6.6738 -1.7291 15 6 3.0513 5.8397 -3.3415 16 6 4.0822 2.5426 -0.0066 17 6 3.4562 1.2845 -0.0009 18 6 4.2317 0.1046 -0.0014 19 1 3.8175 -0.8137 -0.3904 20 6 5.5369 0.1253 0.5021 21 7 5.9248 1.1080 1.2746 22 14 6.7257 -1.2499 0.0720 23 1 6.9101 -1.3023 -1.4006 24 1 8.0343 -0.9957 0.7264 25 1 6.1777 -2.5451 0.5486 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 0.2133 2.3131 0.0015 30 1 1.3180 4.5043 0.0000 31 1 5.2806 4.5581 1.6335 32 1 6.3547 6.7711 1.6332 33 1 5.6595 8.4803 0.0056 34 1 3.8869 7.9868 -1.6273 35 1 2.1363 4.6745 -1.7779 36 1 0.5494 6.4567 -2.4533 37 1 1.6920 7.6930 -1.8758 38 1 0.9371 6.5698 -0.7195 39 1 3.8768 5.1417 -3.4806 40 1 2.2657 5.6228 -4.0653 41 1 3.4087 6.8589 -3.4882 42 1 5.1599 2.6123 -0.0114 43 1 6.8297 1.1221 1.6239 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239866821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:24:12 Heat of formation + Delta-G solvation = -10.492264 kcal Electronic energy + Delta-G solvation = -23775.060813 eV Core-core repulsion = 20556.417174 eV Total energy + Delta-G solvation = -3218.643639 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.48049 -38.40592 -36.02185 -34.99372 -33.69406 -31.27153 -29.82885 -29.33289 -27.65546 -26.87854 -26.42712 -25.18008 -22.96624 -22.20253 -20.88514 -19.81592 -19.37792 -17.43722 -16.63290 -15.98009 -15.46132 -14.97685 -14.71226 -14.63296 -14.38906 -13.67400 -13.58385 -13.36244 -13.21352 -12.92536 -12.68829 -12.46302 -12.09066 -11.90327 -11.76095 -11.64476 -11.45038 -11.30706 -11.14556 -10.86665 -10.83312 -10.81039 -10.51271 -10.38566 -10.16253 -9.90434 -9.62273 -9.44448 -9.13065 -8.30951 -8.16875 -7.49437 -6.88691 -6.62858 -4.24325 1.75804 1.91192 2.76010 2.94540 3.09679 3.12900 3.21474 3.97240 4.28757 4.49414 4.63524 5.09804 5.20204 5.42473 5.48432 5.51208 5.54173 5.64128 5.74593 5.81749 5.84248 5.85696 5.89502 5.97363 6.05245 6.07482 6.11925 6.19403 6.28626 6.34438 6.52038 6.55819 6.57701 6.69102 6.85801 6.95929 7.02206 7.08816 7.19244 7.30254 7.40637 7.50799 7.67292 7.74117 7.99456 8.18085 8.37855 8.68459 8.84348 9.04802 10.21596 Molecular weight = 296.15amu Principal moments of inertia in cm(-1) A = 0.012634 B = 0.005891 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.764403 B = 4751.771339 C = 6213.373042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.312 6.312 3 C 0.017 3.983 4 C -0.180 4.180 5 C -0.191 4.191 6 C -0.069 4.069 7 C -0.009 4.009 8 C -0.106 4.106 9 C -0.128 4.128 10 C -0.138 4.138 11 C -0.122 4.122 12 C -0.072 4.072 13 C -0.075 4.075 14 C -0.138 4.138 15 C -0.139 4.139 16 C -0.124 4.124 17 C 0.095 3.905 18 C -0.446 4.446 19 H 0.082 0.918 20 C 0.074 3.926 21 N -0.796 5.796 22 Si 0.908 3.092 23 H -0.264 1.264 24 H -0.279 1.279 25 H -0.266 1.266 26 H 0.081 0.919 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.127 0.873 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.048 0.952 42 H 0.128 0.872 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.649 7.965 -3.420 9.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.226 6.226 3 C -0.027 4.027 4 C -0.199 4.199 5 C -0.210 4.210 6 C -0.069 4.069 7 C -0.009 4.009 8 C -0.124 4.124 9 C -0.146 4.146 10 C -0.156 4.156 11 C -0.140 4.140 12 C -0.072 4.072 13 C -0.092 4.092 14 C -0.195 4.195 15 C -0.196 4.196 16 C -0.144 4.144 17 C 0.093 3.907 18 C -0.475 4.475 19 H 0.100 0.900 20 C -0.143 4.143 21 N -0.422 5.422 22 Si 0.733 3.267 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.190 1.190 26 H 0.099 0.901 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.145 0.855 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.124 0.876 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.146 0.854 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.352 7.849 -3.274 9.142 hybrid contribution 0.354 -0.334 0.016 0.487 sum -2.997 7.516 -3.259 8.723 Atomic orbital electron populations 1.22735 0.81751 1.01725 0.99929 1.85958 1.18210 1.28345 1.90100 1.19322 0.92368 0.82604 1.08405 1.20535 0.97385 0.92745 1.09262 1.20136 0.92870 0.95336 1.12698 1.18376 0.92763 0.90842 1.04931 1.18995 0.94677 0.93310 0.93908 1.21397 0.95694 0.96525 0.98789 1.20996 1.00345 0.93968 0.99337 1.20965 0.98678 0.98982 0.96981 1.20768 0.97475 0.96384 0.99334 1.19861 0.97585 0.93231 0.96476 1.20448 0.93357 1.02464 0.92978 1.21811 0.97612 0.98632 1.01457 1.21810 1.00850 1.01217 0.95756 1.21183 0.99396 0.89444 1.04366 1.16967 0.87288 0.93901 0.92575 1.19371 0.96519 0.96519 1.35112 0.90005 1.25867 0.98814 0.96882 0.92711 1.69813 1.19065 1.30733 1.22602 0.86364 0.78923 0.81527 0.79921 1.18881 1.20416 1.19028 0.90063 0.94145 0.94217 0.88489 0.88659 0.85455 0.86825 0.87112 0.86975 0.87594 0.92889 0.93176 0.92752 0.92569 0.92913 0.93280 0.85428 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.81 101.05 0.99 1.58 16 2 O -0.31 -7.16 9.76 -18.50 -0.18 -7.34 16 3 C 0.02 0.43 6.72 -38.29 -0.26 0.17 16 4 C -0.18 -3.95 9.01 -39.56 -0.36 -4.31 16 5 C -0.19 -4.11 7.35 -39.03 -0.29 -4.40 16 6 C -0.07 -1.56 4.91 -104.96 -0.51 -2.07 16 7 C -0.01 -0.18 5.47 -104.90 -0.57 -0.75 16 8 C -0.11 -2.03 9.49 -39.25 -0.37 -2.41 16 9 C -0.13 -2.08 10.03 -39.63 -0.40 -2.47 16 10 C -0.14 -2.06 10.04 -39.52 -0.40 -2.45 16 11 C -0.12 -1.87 8.71 -39.63 -0.35 -2.22 16 12 C -0.07 -1.25 4.77 -104.29 -0.50 -1.75 16 13 C -0.07 -1.18 2.24 -91.76 -0.21 -1.39 16 14 C -0.14 -1.84 8.83 37.16 0.33 -1.52 16 15 C -0.14 -1.96 9.01 37.16 0.33 -1.63 16 16 C -0.12 -3.14 8.12 -38.58 -0.31 -3.46 16 17 C 0.10 2.53 5.58 -106.72 -0.60 1.94 16 18 C -0.45 -11.93 8.71 -37.84 -0.33 -12.26 16 19 H 0.08 2.18 7.64 -52.49 -0.40 1.78 16 20 C 0.07 1.86 5.14 -17.33 -0.09 1.77 16 21 N -0.80 -20.26 10.97 55.55 0.61 -19.65 16 22 Si 0.91 18.93 29.59 -169.99 -5.03 13.90 16 23 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 24 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 26 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 28 H 0.04 0.61 7.66 -51.93 -0.40 0.22 16 29 H 0.10 1.86 6.27 -52.48 -0.33 1.53 16 30 H 0.10 1.86 6.44 -52.48 -0.34 1.53 16 31 H 0.13 2.57 8.03 -52.49 -0.42 2.14 16 32 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 33 H 0.11 1.34 8.06 -52.48 -0.42 0.91 16 34 H 0.11 1.47 7.10 -52.49 -0.37 1.09 16 35 H 0.11 1.94 4.60 -51.93 -0.24 1.70 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.60 7.39 -51.93 -0.38 0.22 16 38 H 0.05 0.75 7.57 -51.93 -0.39 0.36 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.62 7.39 -51.93 -0.38 0.23 16 42 H 0.13 3.36 6.14 -52.48 -0.32 3.04 16 43 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 LS Contribution 346.45 15.07 5.22 5.22 Total: -1.00 -27.68 346.45 -9.31 -36.99 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.05 Total: 8.50 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: -3.88 Total: -37.62 kcal Atomic # 7 Polarization: -20.26 SS G_CDS: 0.61 Total: -19.65 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -0.18 Total: -7.34 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.68 -9.31 -36.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239866821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.496 kcal (2) G-P(sol) polarization free energy of solvation -27.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds