Wall clock time and date at job start Fri Apr 10 2020 20:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36268 * 120.06382 * 2 1 4 4 C 1.39921 * 120.12579 * 180.02562 * 3 2 1 5 5 C 1.47984 * 119.88156 * 180.02562 * 4 3 2 6 6 C 1.39619 * 120.14771 * 359.74005 * 5 4 3 7 7 C 1.37917 * 119.85276 * 179.74829 * 6 5 4 8 8 C 1.38407 * 120.14400 * 0.53186 * 7 6 5 9 9 C 1.38362 * 120.29389 * 359.74449 * 8 7 6 10 10 C 1.50701 * 119.92748 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47299 * 329.98097 * 10 9 8 12 12 C 1.53002 * 109.47082 * 89.98037 * 10 9 8 13 13 O 1.42899 * 109.47112 * 209.97531 * 10 9 8 14 14 C 1.37965 * 120.14390 * 359.97438 * 9 8 7 15 15 C 1.39956 * 120.23190 * 0.04362 * 4 3 2 16 16 C 1.36239 * 120.12544 * 359.97438 * 15 4 3 17 17 C 1.40919 * 120.06106 * 180.02562 * 2 1 3 18 18 C 1.41024 * 120.11524 * 0.25357 * 17 2 1 19 19 H 1.08002 * 119.99881 * 333.33417 * 18 17 2 20 20 C 1.40007 * 120.00192 * 153.33801 * 18 17 2 21 21 N 1.30798 * 119.99935 * 343.90062 * 20 18 17 22 22 Si 1.86797 * 120.00316 * 163.89797 * 20 18 17 23 23 H 1.48508 * 109.46988 * 90.00087 * 22 20 18 24 24 H 1.48505 * 109.47489 * 209.99965 * 22 20 18 25 25 H 1.48503 * 109.47112 * 330.00268 * 22 20 18 26 26 H 1.08999 * 109.46805 * 269.95946 * 1 2 3 27 27 H 1.08999 * 109.47085 * 29.95568 * 1 2 3 28 28 H 1.08993 * 109.47145 * 149.95231 * 1 2 3 29 29 H 1.07995 * 119.94039 * 359.97438 * 3 2 1 30 30 H 1.08001 * 120.07068 * 0.02782 * 6 5 4 31 31 H 1.08000 * 119.92299 * 180.27864 * 7 6 5 32 32 H 1.08002 * 119.84912 * 179.72212 * 8 7 6 33 33 H 1.08994 * 109.47311 * 59.99455 * 11 10 9 34 34 H 1.09003 * 109.47333 * 180.02562 * 11 10 9 35 35 H 1.09002 * 109.47031 * 299.99722 * 11 10 9 36 36 H 1.09003 * 109.47457 * 59.99514 * 12 10 9 37 37 H 1.09004 * 109.47369 * 180.02562 * 12 10 9 38 38 H 1.09000 * 109.47076 * 300.00037 * 12 10 9 39 39 H 0.96705 * 113.99616 * 60.00013 * 13 10 9 40 40 H 1.08000 * 120.06876 * 179.97438 * 14 9 8 41 41 H 1.08006 * 119.93786 * 180.02562 * 15 4 3 42 42 H 1.07998 * 120.06289 * 179.97438 * 16 15 4 43 43 H 0.97001 * 119.99756 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1896 1.1794 0.0000 4 6 3.5888 1.1809 -0.0005 5 6 4.3247 2.4648 0.0000 6 6 3.6260 3.6735 -0.0044 7 6 4.3179 4.8665 0.0015 8 6 5.7020 4.8673 0.0005 9 6 6.4006 3.6730 -0.0009 10 6 7.9075 3.6834 -0.0025 11 6 8.4081 4.9363 -0.7239 12 6 8.4190 3.6866 1.4395 13 8 8.3912 2.5201 -0.6768 14 6 5.7205 2.4725 -0.0009 15 6 4.2948 -0.0276 -0.0020 16 6 3.6223 -1.2124 -0.0024 17 6 2.2129 -1.2196 -0.0005 18 6 1.5115 -2.4431 -0.0065 19 1 0.5162 -2.4970 0.4093 20 6 2.1055 -3.5879 -0.5513 21 7 3.1533 -3.4753 -1.3261 22 14 1.4016 -5.2761 -0.1718 23 1 0.3779 -5.6257 -1.1893 24 1 2.4915 -6.2845 -0.1994 25 1 0.7759 -5.2602 1.1748 26 1 -0.3633 -0.0007 1.0277 27 1 -0.3633 0.8904 -0.5131 28 1 -0.3633 -0.8895 -0.5145 29 1 1.6497 2.1147 -0.0004 30 1 2.5460 3.6742 -0.0077 31 1 3.7785 5.8022 0.0026 32 1 6.2390 5.8043 0.0006 33 1 8.0391 5.8236 -0.2096 34 1 9.4981 4.9436 -0.7255 35 1 8.0438 4.9340 -1.7513 36 1 8.0624 2.7940 1.9535 37 1 9.5091 3.6946 1.4384 38 1 8.0501 4.5739 1.9539 39 1 8.1053 2.4522 -1.5982 40 1 6.2671 1.5410 -0.0024 41 1 5.3749 -0.0209 -0.0020 42 1 4.1681 -2.1443 -0.0039 43 1 3.5650 -4.2685 -1.7033 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240407448.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:24:35 Heat of formation + Delta-G solvation = -28.099738 kcal Electronic energy + Delta-G solvation = -22994.058927 eV Core-core repulsion = 19774.651771 eV Total energy + Delta-G solvation = -3219.407156 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.62972 -38.04023 -36.75798 -34.01677 -32.77874 -31.97027 -30.48363 -29.90825 -28.50136 -27.36772 -26.23393 -24.84562 -22.90258 -22.09943 -21.08110 -19.61509 -19.05045 -17.38500 -17.20602 -16.09125 -15.44897 -14.96607 -14.73324 -14.40915 -14.29537 -13.85233 -13.38025 -13.18862 -12.88513 -12.70380 -12.60310 -12.38213 -12.18515 -12.03563 -12.03080 -11.80273 -11.61457 -11.36099 -11.25469 -11.17118 -11.07925 -10.84135 -10.69702 -10.47014 -10.39129 -9.89159 -9.60151 -9.40164 -9.30790 -8.53675 -8.37255 -7.47497 -7.05429 -6.87403 -4.43896 1.57993 1.84241 2.75999 2.98448 3.02279 3.03520 3.17164 3.80227 4.20611 4.27098 4.66607 4.75611 4.93486 5.09824 5.34135 5.41125 5.55243 5.58115 5.64808 5.72841 5.78328 5.83801 5.96105 5.98178 6.09485 6.16531 6.19570 6.23170 6.35090 6.49347 6.53538 6.61311 6.69468 6.83780 6.92158 6.93974 6.97384 7.06073 7.18700 7.38955 7.49847 7.55705 7.73791 7.85596 7.94755 8.06560 8.16367 8.48655 8.72095 8.84637 9.99571 Molecular weight = 296.15amu Principal moments of inertia in cm(-1) A = 0.021468 B = 0.003653 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.939640 B = 7664.048912 C = 8704.402750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.202 4.202 3 C -0.061 4.061 4 C -0.203 4.203 5 C 0.024 3.976 6 C -0.145 4.145 7 C -0.113 4.113 8 C -0.156 4.156 9 C -0.112 4.112 10 C 0.170 3.830 11 C -0.174 4.174 12 C -0.133 4.133 13 O -0.556 6.556 14 C -0.127 4.127 15 C -0.078 4.078 16 C -0.168 4.168 17 C 0.123 3.877 18 C -0.444 4.444 19 H 0.084 0.916 20 C 0.073 3.927 21 N -0.779 5.779 22 Si 0.910 3.090 23 H -0.268 1.268 24 H -0.274 1.274 25 H -0.259 1.259 26 H 0.042 0.958 27 H 0.038 0.962 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.378 0.622 40 H 0.125 0.875 41 H 0.092 0.908 42 H 0.118 0.882 43 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.434 10.445 1.112 11.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.204 4.204 3 C -0.079 4.079 4 C -0.204 4.204 5 C 0.024 3.976 6 C -0.163 4.163 7 C -0.131 4.131 8 C -0.174 4.174 9 C -0.112 4.112 10 C 0.129 3.871 11 C -0.232 4.232 12 C -0.190 4.190 13 O -0.362 6.362 14 C -0.145 4.145 15 C -0.096 4.096 16 C -0.187 4.187 17 C 0.120 3.880 18 C -0.472 4.472 19 H 0.102 0.898 20 C -0.146 4.146 21 N -0.403 5.403 22 Si 0.733 3.267 23 H -0.193 1.193 24 H -0.199 1.199 25 H -0.183 1.183 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.135 0.865 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.225 0.775 40 H 0.143 0.857 41 H 0.110 0.890 42 H 0.136 0.864 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.869 10.177 1.540 11.849 hybrid contribution -0.562 -0.610 -0.537 0.988 sum 5.307 9.567 1.003 10.986 Atomic orbital electron populations 1.20411 0.93424 1.00652 0.99722 1.19447 0.94495 0.93037 1.13372 1.20260 0.92835 0.96070 0.98756 1.18060 0.92488 0.90595 1.19247 1.19024 0.92407 0.93003 0.93172 1.21220 0.99675 0.91907 1.03524 1.20903 0.94113 0.97427 1.00619 1.20793 0.94046 0.96790 1.05751 1.20266 0.95117 0.93786 1.02041 1.19939 0.88790 0.85106 0.93230 1.22518 1.01499 0.98200 1.00953 1.21724 1.01040 1.02828 0.93417 1.86522 1.76114 1.44412 1.29199 1.21047 0.93524 0.97443 1.02450 1.20538 0.97453 0.92440 0.99162 1.20978 0.94455 0.96624 1.06690 1.17593 0.91915 0.91681 0.86771 1.19697 1.02087 0.92694 1.32719 0.89813 1.26028 0.94175 1.01734 0.92709 1.69811 1.17591 1.32333 1.20547 0.86278 0.79543 0.80506 0.80326 1.19290 1.19897 1.18253 0.93969 0.94298 0.92019 0.89013 0.86496 0.87045 0.86999 0.91351 0.91949 0.92185 0.91629 0.92024 0.91271 0.77482 0.85683 0.88952 0.86421 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.72 9.39 36.00 0.34 -1.38 16 2 C -0.20 -4.76 5.90 -104.32 -0.62 -5.38 16 3 C -0.06 -1.36 9.00 -39.66 -0.36 -1.72 16 4 C -0.20 -4.54 5.90 -104.63 -0.62 -5.16 16 5 C 0.02 0.47 5.88 -104.89 -0.62 -0.14 16 6 C -0.15 -2.53 9.43 -39.18 -0.37 -2.90 16 7 C -0.11 -1.68 10.03 -39.64 -0.40 -2.08 16 8 C -0.16 -2.21 9.14 -39.47 -0.36 -2.57 16 9 C -0.11 -1.70 4.80 -104.68 -0.50 -2.20 16 10 C 0.17 2.19 1.23 -91.77 -0.11 2.07 16 11 C -0.17 -1.79 8.12 37.16 0.30 -1.49 16 12 C -0.13 -1.60 8.82 37.16 0.33 -1.28 16 13 O -0.56 -7.66 11.96 -35.23 -0.42 -8.08 16 14 C -0.13 -2.28 8.72 -39.18 -0.34 -2.62 16 15 C -0.08 -1.81 9.36 -39.66 -0.37 -2.19 16 16 C -0.17 -4.27 8.61 -39.28 -0.34 -4.61 16 17 C 0.12 3.16 5.56 -106.80 -0.59 2.56 16 18 C -0.44 -11.12 8.09 -37.86 -0.31 -11.42 16 19 H 0.08 2.00 6.88 -52.49 -0.36 1.64 16 20 C 0.07 1.75 5.16 -17.33 -0.09 1.66 16 21 N -0.78 -19.27 10.96 55.55 0.61 -18.66 16 22 Si 0.91 17.73 29.59 -169.99 -5.03 12.70 16 23 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 24 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 25 H -0.26 -5.02 7.11 56.52 0.40 -4.61 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 28 H 0.06 1.26 6.77 -51.93 -0.35 0.91 16 29 H 0.09 1.82 6.18 -52.49 -0.32 1.50 16 30 H 0.12 1.94 6.18 -52.49 -0.32 1.62 16 31 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.11 1.30 6.15 -52.49 -0.32 0.98 16 33 H 0.07 0.63 6.50 -51.93 -0.34 0.29 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.38 4.25 9.04 45.56 0.41 4.66 16 40 H 0.13 2.31 5.60 -52.49 -0.29 2.02 16 41 H 0.09 1.99 6.18 -52.48 -0.32 1.67 16 42 H 0.12 3.07 6.23 -52.49 -0.33 2.74 16 43 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 LS Contribution 345.97 15.07 5.21 5.21 Total: -1.00 -27.16 345.97 -9.72 -36.88 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -5.07 Total: 12.78 kcal Atomic # 6 Polarization: -35.82 SS G_CDS: -5.02 Total: -40.84 kcal Atomic # 7 Polarization: -19.27 SS G_CDS: 0.61 Total: -18.66 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.42 Total: -8.08 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.70 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.16 -9.72 -36.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240407448.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.779 kcal (2) G-P(sol) polarization free energy of solvation -27.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds