Wall clock time and date at job start Fri Apr 10 2020 20:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36268 * 120.06382 * 2 1 4 4 C 1.39921 * 120.12579 * 180.02562 * 3 2 1 5 5 C 1.47984 * 119.88156 * 180.02562 * 4 3 2 6 6 C 1.39619 * 120.14771 * 359.74005 * 5 4 3 7 7 C 1.37917 * 119.85276 * 179.74829 * 6 5 4 8 8 C 1.38407 * 120.14400 * 0.53186 * 7 6 5 9 9 C 1.38362 * 120.29389 * 359.74449 * 8 7 6 10 10 C 1.50701 * 119.92748 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47299 * 329.98097 * 10 9 8 12 12 C 1.53002 * 109.47082 * 89.98037 * 10 9 8 13 13 O 1.42899 * 109.47112 * 209.97531 * 10 9 8 14 14 C 1.37965 * 120.14390 * 359.97438 * 9 8 7 15 15 C 1.39956 * 120.23190 * 0.04362 * 4 3 2 16 16 C 1.36239 * 120.12544 * 359.97438 * 15 4 3 17 17 C 1.40919 * 120.06106 * 180.02562 * 2 1 3 18 18 C 1.41024 * 120.11524 * 0.25357 * 17 2 1 19 19 H 1.08002 * 119.99881 * 333.33417 * 18 17 2 20 20 C 1.40007 * 120.00192 * 153.33801 * 18 17 2 21 21 N 1.30798 * 119.99935 * 343.90062 * 20 18 17 22 22 Si 1.86797 * 120.00316 * 163.89797 * 20 18 17 23 23 H 1.48508 * 109.46988 * 90.00087 * 22 20 18 24 24 H 1.48505 * 109.47489 * 209.99965 * 22 20 18 25 25 H 1.48503 * 109.47112 * 330.00268 * 22 20 18 26 26 H 1.08999 * 109.46805 * 269.95946 * 1 2 3 27 27 H 1.08999 * 109.47085 * 29.95568 * 1 2 3 28 28 H 1.08993 * 109.47145 * 149.95231 * 1 2 3 29 29 H 1.07995 * 119.94039 * 359.97438 * 3 2 1 30 30 H 1.08001 * 120.07068 * 0.02782 * 6 5 4 31 31 H 1.08000 * 119.92299 * 180.27864 * 7 6 5 32 32 H 1.08002 * 119.84912 * 179.72212 * 8 7 6 33 33 H 1.08994 * 109.47311 * 59.99455 * 11 10 9 34 34 H 1.09003 * 109.47333 * 180.02562 * 11 10 9 35 35 H 1.09002 * 109.47031 * 299.99722 * 11 10 9 36 36 H 1.09003 * 109.47457 * 59.99514 * 12 10 9 37 37 H 1.09004 * 109.47369 * 180.02562 * 12 10 9 38 38 H 1.09000 * 109.47076 * 300.00037 * 12 10 9 39 39 H 0.96705 * 113.99616 * 60.00013 * 13 10 9 40 40 H 1.08000 * 120.06876 * 179.97438 * 14 9 8 41 41 H 1.08006 * 119.93786 * 180.02562 * 15 4 3 42 42 H 1.07998 * 120.06289 * 179.97438 * 16 15 4 43 43 H 0.97001 * 119.99756 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1896 1.1794 0.0000 4 6 3.5888 1.1809 -0.0005 5 6 4.3247 2.4648 0.0000 6 6 3.6260 3.6735 -0.0044 7 6 4.3179 4.8665 0.0015 8 6 5.7020 4.8673 0.0005 9 6 6.4006 3.6730 -0.0009 10 6 7.9075 3.6834 -0.0025 11 6 8.4081 4.9363 -0.7239 12 6 8.4190 3.6866 1.4395 13 8 8.3912 2.5201 -0.6768 14 6 5.7205 2.4725 -0.0009 15 6 4.2948 -0.0276 -0.0020 16 6 3.6223 -1.2124 -0.0024 17 6 2.2129 -1.2196 -0.0005 18 6 1.5115 -2.4431 -0.0065 19 1 0.5162 -2.4970 0.4093 20 6 2.1055 -3.5879 -0.5513 21 7 3.1533 -3.4753 -1.3261 22 14 1.4016 -5.2761 -0.1718 23 1 0.3779 -5.6257 -1.1893 24 1 2.4915 -6.2845 -0.1994 25 1 0.7759 -5.2602 1.1748 26 1 -0.3633 -0.0007 1.0277 27 1 -0.3633 0.8904 -0.5131 28 1 -0.3633 -0.8895 -0.5145 29 1 1.6497 2.1147 -0.0004 30 1 2.5460 3.6742 -0.0077 31 1 3.7785 5.8022 0.0026 32 1 6.2390 5.8043 0.0006 33 1 8.0391 5.8236 -0.2096 34 1 9.4981 4.9436 -0.7255 35 1 8.0438 4.9340 -1.7513 36 1 8.0624 2.7940 1.9535 37 1 9.5091 3.6946 1.4384 38 1 8.0501 4.5739 1.9539 39 1 8.1053 2.4522 -1.5982 40 1 6.2671 1.5410 -0.0024 41 1 5.3749 -0.0209 -0.0020 42 1 4.1681 -2.1443 -0.0039 43 1 3.5650 -4.2685 -1.7033 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240407448.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:24:34 Heat of formation + Delta-G solvation = -41.197797 kcal Electronic energy + Delta-G solvation = -22994.626902 eV Core-core repulsion = 19774.651771 eV Total energy + Delta-G solvation = -3219.975131 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.89917 -39.64438 -38.02301 -35.71904 -34.12645 -33.42194 -32.10388 -31.21388 -30.00704 -28.31518 -27.87423 -26.51471 -24.24517 -23.52217 -22.59827 -21.09437 -20.49950 -19.17426 -18.45157 -17.35355 -17.11369 -16.23294 -15.92061 -15.89622 -15.62562 -15.29434 -14.83572 -14.66005 -14.44598 -14.32092 -13.84097 -13.62160 -13.43739 -13.33920 -13.16854 -13.06144 -12.97113 -12.87432 -12.80096 -12.59393 -12.42582 -12.31865 -12.21647 -11.91279 -11.63198 -11.36173 -11.17326 -11.06756 -10.88535 -10.07562 -9.63745 -9.29216 -8.78472 -8.60250 -6.29793 0.14017 0.55124 1.13146 1.20544 1.37523 1.50536 1.58876 2.17500 2.64006 3.09362 3.31206 3.68041 3.74788 3.95342 4.10429 4.18124 4.21821 4.27074 4.43882 4.47824 4.62153 4.68064 4.72161 4.75868 4.84908 4.88371 4.95073 4.99021 5.02337 5.10244 5.16273 5.22299 5.23516 5.29645 5.32361 5.35755 5.44961 5.64425 5.68482 5.73586 5.77405 6.01040 6.12580 6.24618 6.31195 6.33887 6.64752 6.79069 6.88572 7.01647 8.26863 Molecular weight = 296.15amu Principal moments of inertia in cm(-1) A = 0.021468 B = 0.003653 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.939640 B = 7664.048912 C = 8704.402750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.215 4.215 3 C -0.074 4.074 4 C -0.197 4.197 5 C -0.014 4.014 6 C -0.149 4.149 7 C -0.110 4.110 8 C -0.137 4.137 9 C -0.111 4.111 10 C 0.165 3.835 11 C -0.168 4.168 12 C -0.135 4.135 13 O -0.574 6.574 14 C -0.137 4.137 15 C -0.092 4.092 16 C -0.192 4.192 17 C 0.089 3.911 18 C -0.478 4.478 19 H 0.086 0.914 20 C 0.033 3.967 21 N -0.819 5.819 22 Si 0.982 3.018 23 H -0.260 1.260 24 H -0.269 1.269 25 H -0.257 1.257 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.041 0.959 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.385 0.615 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.651 13.728 1.296 14.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.217 4.217 3 C -0.092 4.092 4 C -0.198 4.198 5 C -0.014 4.014 6 C -0.167 4.167 7 C -0.127 4.127 8 C -0.155 4.155 9 C -0.112 4.112 10 C 0.125 3.875 11 C -0.225 4.225 12 C -0.192 4.192 13 O -0.382 6.382 14 C -0.155 4.155 15 C -0.110 4.110 16 C -0.211 4.211 17 C 0.086 3.914 18 C -0.506 4.506 19 H 0.104 0.896 20 C -0.183 4.183 21 N -0.444 5.444 22 Si 0.802 3.198 23 H -0.184 1.184 24 H -0.193 1.193 25 H -0.180 1.180 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.137 0.863 30 H 0.141 0.859 31 H 0.166 0.834 32 H 0.168 0.832 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.234 0.766 40 H 0.125 0.875 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.087 13.479 1.720 14.889 hybrid contribution -0.446 -1.287 -0.584 1.482 sum 5.640 12.192 1.136 13.481 Atomic orbital electron populations 1.20391 0.91143 1.01341 1.00750 1.19913 0.96453 0.92787 1.12498 1.20569 0.93000 0.96828 0.98764 1.18461 0.93076 0.91598 1.16637 1.19026 0.93129 0.92609 0.96595 1.21397 1.00202 0.91992 1.03122 1.21325 0.94645 0.97811 0.98948 1.21289 0.94066 0.97730 1.02380 1.20580 0.96649 0.93129 1.00807 1.20152 0.87224 0.86144 0.94024 1.22468 1.02232 0.96983 1.00836 1.21778 1.01935 1.02581 0.92895 1.86508 1.76220 1.45427 1.30029 1.21020 0.93103 0.98199 1.03152 1.20686 0.97921 0.92688 0.99747 1.20945 0.94986 0.96536 1.08649 1.17943 0.92179 0.93099 0.88160 1.19891 1.02638 0.93589 1.34509 0.89575 1.26866 0.94319 1.05210 0.91900 1.69880 1.19159 1.33518 1.21821 0.85201 0.78870 0.75594 0.80103 1.18423 1.19305 1.18015 0.92638 0.91919 0.92919 0.86309 0.85908 0.83363 0.83158 0.89538 0.90928 0.91897 0.93941 0.90750 0.89438 0.76572 0.87513 0.88386 0.88350 0.89998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.19 9.39 71.24 0.67 -2.52 16 2 C -0.22 -10.40 5.90 -19.67 -0.12 -10.51 16 3 C -0.07 -3.32 9.00 22.22 0.20 -3.12 16 4 C -0.20 -9.05 5.90 -19.87 -0.12 -9.17 16 5 C -0.01 -0.53 5.88 -20.04 -0.12 -0.65 16 6 C -0.15 -4.86 9.43 22.53 0.21 -4.65 16 7 C -0.11 -2.79 10.03 22.23 0.22 -2.57 16 8 C -0.14 -3.25 9.14 22.34 0.20 -3.05 16 9 C -0.11 -3.11 4.80 -19.90 -0.10 -3.21 16 10 C 0.16 3.84 1.23 -11.54 -0.01 3.82 16 11 C -0.17 -2.75 8.12 71.98 0.58 -2.17 16 12 C -0.13 -2.95 8.82 71.98 0.64 -2.32 16 13 O -0.57 -15.35 11.96 -148.98 -1.78 -17.13 16 14 C -0.14 -4.89 8.72 22.53 0.20 -4.70 16 15 C -0.09 -4.59 9.36 22.22 0.21 -4.38 16 16 C -0.19 -10.46 8.61 22.47 0.19 -10.26 16 17 C 0.09 4.80 5.56 -21.28 -0.12 4.68 16 18 C -0.48 -25.16 8.09 23.38 0.19 -24.97 16 19 H 0.09 4.29 6.88 -2.91 -0.02 4.27 16 20 C 0.03 1.64 5.16 85.28 0.44 2.08 16 21 N -0.82 -42.89 10.96 21.84 0.24 -42.65 16 22 Si 0.98 37.56 29.59 68.60 2.03 39.59 16 23 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 24 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 25 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 26 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 28 H 0.05 2.18 6.77 -2.39 -0.02 2.16 16 29 H 0.12 4.57 6.18 -2.91 -0.02 4.55 16 30 H 0.12 3.77 6.18 -2.91 -0.02 3.76 16 31 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 32 H 0.15 2.49 6.15 -2.91 -0.02 2.47 16 33 H 0.09 1.11 6.50 -2.39 -0.02 1.09 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.39 8.50 9.04 -74.05 -0.67 7.83 16 40 H 0.11 4.14 5.60 -2.91 -0.02 4.12 16 41 H 0.10 4.58 6.18 -2.91 -0.02 4.57 16 42 H 0.10 5.60 6.23 -2.91 -0.02 5.58 16 43 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 Total: -1.00 -62.62 345.97 4.23 -58.39 By element: Atomic # 1 Polarization: 39.09 SS G_CDS: 0.37 Total: 39.46 kcal Atomic # 6 Polarization: -81.03 SS G_CDS: 3.38 Total: -77.65 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.24 Total: -42.65 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -1.78 Total: -17.13 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal Total: -62.62 4.23 -58.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240407448.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.191 kcal (2) G-P(sol) polarization free energy of solvation -62.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds