Wall clock time and date at job start Fri Apr 10 2020 20:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86792 * 120.00216 * 2 1 4 4 H 1.48502 * 109.47368 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47195 * 300.00625 * 3 2 1 6 6 H 1.48501 * 109.47309 * 60.00296 * 3 2 1 7 7 C 1.38812 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99743 * 192.30735 * 7 2 1 9 9 N 1.36937 * 120.00401 * 12.30134 * 7 2 1 10 10 C 1.46892 * 120.69017 * 210.93228 * 9 7 2 11 11 C 1.53147 * 109.09550 * 235.36169 * 10 9 7 12 12 C 1.53182 * 109.35038 * 303.54612 * 11 10 9 13 13 C 1.52636 * 109.34624 * 59.07213 * 12 11 10 14 14 C 1.53449 * 113.67814 * 74.01344 * 13 12 11 15 15 N 1.47680 * 86.09494 * 137.83401 * 14 13 12 16 16 C 1.34771 * 134.45545 * 155.78226 * 15 14 13 17 17 O 1.21277 * 119.99781 * 184.91045 * 16 15 14 18 18 C 1.50702 * 119.99869 * 4.90722 * 16 15 14 19 19 C 1.52997 * 115.54883 * 41.73787 * 18 16 15 20 20 F 1.39901 * 109.46940 * 184.86022 * 19 18 16 21 21 C 1.52997 * 117.49812 * 256.02787 * 18 16 15 22 22 C 1.52998 * 117.49744 * 187.40307 * 18 16 15 23 23 C 1.47921 * 90.99569 * 335.81966 * 15 14 13 24 24 C 1.47115 * 120.68586 * 30.96074 * 9 7 2 25 25 H 0.96998 * 119.99585 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.53224 * 115.47519 * 10 9 7 27 27 H 1.09000 * 109.59848 * 355.28516 * 10 9 7 28 28 H 1.08996 * 109.49108 * 183.58097 * 11 10 9 29 29 H 1.09001 * 109.50834 * 63.52142 * 11 10 9 30 30 H 1.08997 * 109.49119 * 299.10264 * 12 11 10 31 31 H 1.08998 * 109.48976 * 179.03106 * 12 11 10 32 32 H 1.09000 * 113.79675 * 252.15246 * 14 13 12 33 33 H 1.09001 * 113.79315 * 23.51669 * 14 13 12 34 34 H 1.09003 * 109.47240 * 304.86026 * 19 18 16 35 35 H 1.09003 * 109.47285 * 64.86309 * 19 18 16 36 36 H 1.08995 * 117.50331 * 0.02562 * 21 18 16 37 37 H 1.09002 * 117.49988 * 145.02840 * 21 18 16 38 38 H 1.09001 * 117.49943 * 214.97807 * 22 18 16 39 39 H 1.08996 * 117.49986 * 0.02562 * 22 18 16 40 40 H 1.08993 * 113.69356 * 269.91227 * 23 15 14 41 41 H 1.09001 * 113.96078 * 138.48500 * 23 15 14 42 42 H 1.09004 * 109.64021 * 8.90052 * 24 9 7 43 43 H 1.09003 * 109.63445 * 248.29199 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0717 -1.2130 0.1988 9 7 1.3491 -2.3744 -0.2537 10 6 1.7950 -3.6336 0.3572 11 6 2.0495 -4.6637 -0.7471 12 6 0.7787 -4.8337 -1.5853 13 6 0.3904 -3.4886 -2.1934 14 6 1.2931 -3.0541 -3.3557 15 7 0.0498 -2.6285 -4.0295 16 6 -0.2427 -1.7318 -4.9922 17 8 -1.3980 -1.5258 -5.2981 18 6 0.8659 -0.9853 -5.6885 19 6 2.0961 -1.8191 -6.0519 20 9 3.0832 -0.9848 -6.5875 21 6 1.0936 0.4742 -5.2900 22 6 0.4673 0.1400 -6.6454 23 6 -0.7440 -3.5807 -3.2225 24 6 0.1780 -2.3987 -1.1437 25 1 -0.4849 0.8401 0.0004 26 1 1.0230 -4.0050 1.0312 27 1 2.7153 -3.4633 0.9158 28 1 2.3193 -5.6194 -0.2978 29 1 2.8630 -4.3194 -1.3856 30 1 -0.0308 -5.1929 -0.9500 31 1 0.9625 -5.5537 -2.3827 32 1 1.9631 -2.2307 -3.1082 33 1 1.8007 -3.8816 -3.8513 34 1 2.4805 -2.3087 -5.1571 35 1 1.8192 -2.5734 -6.7884 36 1 0.4419 0.8944 -4.5240 37 1 2.1201 0.8408 -5.2867 38 1 1.0819 0.2866 -7.5336 39 1 -0.5966 0.3406 -6.7710 40 1 -0.8441 -4.5651 -3.6796 41 1 -1.6927 -3.1774 -2.8684 42 1 0.0717 -1.4319 -1.6359 43 1 -0.7184 -2.6183 -0.5637 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982004708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:24:10 Heat of formation + Delta-G solvation = -5.338061 kcal Electronic energy + Delta-G solvation = -25752.124213 eV Core-core repulsion = 22135.227604 eV Total energy + Delta-G solvation = -3616.896609 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -47.73771 -40.52894 -38.71092 -36.19528 -35.65318 -32.98864 -30.57563 -29.90510 -28.13482 -26.10885 -25.83975 -25.37669 -22.47203 -22.38394 -22.14664 -20.43706 -18.62518 -18.03396 -17.13728 -16.79683 -16.10048 -15.94227 -15.46869 -15.06275 -14.92466 -14.78049 -14.09819 -13.82049 -13.59422 -13.45437 -13.21678 -12.95845 -12.66073 -12.25189 -12.03308 -11.81275 -11.73592 -11.68538 -11.38659 -11.25675 -10.97852 -10.81609 -10.51024 -10.45596 -10.31543 -10.21348 -9.97907 -9.91225 -9.80150 -9.53285 -9.32753 -8.54317 -8.36303 -6.68874 -5.84152 -3.30905 2.70330 3.00821 3.33095 3.41737 3.42904 3.77776 4.38565 4.43038 4.47053 4.67182 4.70845 4.80086 4.97322 5.19624 5.26981 5.28989 5.41671 5.50660 5.52710 5.65957 5.67707 5.70444 5.74515 5.75881 5.85538 5.94032 6.02381 6.05939 6.13704 6.22699 6.23761 6.35964 6.46491 6.51396 6.71455 6.79670 6.94063 7.23649 7.58345 7.75609 7.99360 8.39416 8.41005 9.16004 9.78145 10.36422 11.24419 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.011710 B = 0.007275 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.504527 B = 3847.613482 C = 5008.582042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.008 3.992 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.255 4.255 8 H 0.065 0.935 9 N -0.589 5.589 10 C 0.143 3.857 11 C -0.133 4.133 12 C -0.095 4.095 13 C -0.108 4.108 14 C 0.110 3.890 15 N -0.631 5.631 16 C 0.579 3.421 17 O -0.544 6.544 18 C -0.199 4.199 19 C 0.102 3.898 20 F -0.210 7.210 21 C -0.138 4.138 22 C -0.139 4.139 23 C 0.114 3.886 24 C 0.201 3.799 25 H 0.254 0.746 26 H 0.018 0.982 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.463 -7.663 -9.260 12.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.191 4.191 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.385 4.385 8 H 0.083 0.917 9 N -0.311 5.311 10 C 0.017 3.983 11 C -0.173 4.173 12 C -0.133 4.133 13 C -0.111 4.111 14 C -0.012 4.012 15 N -0.365 5.365 16 C 0.367 3.633 17 O -0.422 6.422 18 C -0.203 4.203 19 C 0.047 3.953 20 F -0.191 7.191 21 C -0.175 4.175 22 C -0.176 4.176 23 C -0.009 4.009 24 C 0.074 3.926 25 H 0.064 0.936 26 H 0.036 0.964 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.725 -7.225 -9.563 12.291 hybrid contribution 0.460 0.830 -0.006 0.949 sum 3.185 -6.395 -9.570 11.942 Atomic orbital electron populations 1.69978 1.05228 1.25500 1.53679 1.25134 0.95304 0.98355 1.00317 0.86295 0.79401 0.84125 0.77425 1.20167 1.21461 1.21631 1.19162 0.91170 0.83959 1.44221 0.91723 1.43988 1.33410 1.03113 1.50627 1.20903 0.97648 0.87080 0.92691 1.22016 0.97030 0.99076 0.99136 1.21296 0.98439 0.94830 0.98733 1.22960 0.93797 0.98854 0.95446 1.23326 0.88926 0.98992 0.89967 1.49875 1.12339 1.37456 1.36826 1.18698 0.88200 0.78698 0.77655 1.90668 1.20845 1.65683 1.65018 1.22043 0.97972 0.92609 1.07672 1.21417 0.83890 0.90450 0.99556 1.92751 1.63609 1.74560 1.88210 1.23053 1.03367 0.92332 0.98760 1.23018 1.02727 0.97973 0.93884 1.23288 0.97501 0.91508 0.88573 1.20491 0.88851 0.95154 0.88057 0.93584 0.96443 0.92829 0.93005 0.92378 0.91965 0.93110 0.88982 0.90790 0.89437 0.90284 0.87659 0.87298 0.87777 0.87303 0.90408 0.90033 0.89204 0.95749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.46 11.17 55.49 0.62 -24.84 16 2 C 0.01 0.22 5.01 -17.43 -0.09 0.13 16 3 Si 0.90 21.20 29.57 -169.99 -5.03 16.17 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.26 -6.61 9.58 -15.06 -0.14 -6.76 16 8 H 0.07 1.66 7.86 -52.48 -0.41 1.25 16 9 N -0.59 -13.62 2.99 -172.46 -0.52 -14.14 16 10 C 0.14 2.75 6.45 -3.75 -0.02 2.73 16 11 C -0.13 -2.01 6.01 -26.56 -0.16 -2.17 16 12 C -0.09 -1.35 5.07 -26.82 -0.14 -1.48 16 13 C -0.11 -1.80 0.87 -154.42 -0.13 -1.93 16 14 C 0.11 1.70 5.23 -3.17 -0.02 1.68 16 15 N -0.63 -10.64 3.44 -179.38 -0.62 -11.25 16 16 C 0.58 10.49 7.55 -10.99 -0.08 10.41 16 17 O -0.54 -11.55 17.02 5.56 0.09 -11.46 16 18 C -0.20 -3.04 2.47 -155.66 -0.39 -3.43 16 19 C 0.10 1.30 7.36 37.16 0.27 1.57 16 20 F -0.21 -2.88 15.94 2.25 0.04 -2.85 16 21 C -0.14 -2.12 9.66 -26.73 -0.26 -2.38 16 22 C -0.14 -1.93 9.50 -26.73 -0.25 -2.18 16 23 C 0.11 1.79 7.99 -3.04 -0.02 1.76 16 24 C 0.20 4.43 4.29 -3.81 -0.02 4.41 16 25 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.89 7.93 -51.93 -0.41 0.47 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.60 8.12 -51.93 -0.42 0.18 16 32 H 0.09 1.62 7.82 -51.93 -0.41 1.21 16 33 H 0.07 0.92 7.90 -51.93 -0.41 0.51 16 34 H 0.09 1.08 5.36 -51.93 -0.28 0.80 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 37 H 0.11 1.57 7.64 -51.93 -0.40 1.17 16 38 H 0.10 1.24 7.93 -51.93 -0.41 0.83 16 39 H 0.11 1.59 7.69 -51.93 -0.40 1.19 16 40 H 0.08 1.01 8.09 -51.93 -0.42 0.59 16 41 H 0.08 1.39 8.09 -51.93 -0.42 0.97 16 42 H 0.09 2.31 6.14 -51.93 -0.32 1.99 16 43 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 344.15 15.07 5.19 5.19 Total: -1.00 -30.19 344.15 -8.46 -38.65 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -6.79 Total: 2.16 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.45 Total: 2.37 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: -0.51 Total: -50.23 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.04 Total: -2.85 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.19 -8.46 -38.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982004708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.312 kcal (2) G-P(sol) polarization free energy of solvation -30.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds