Wall clock time and date at job start Fri Apr 10 2020 20:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86792 * 120.00216 * 2 1 4 4 H 1.48502 * 109.47368 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47195 * 300.00625 * 3 2 1 6 6 H 1.48501 * 109.47309 * 60.00296 * 3 2 1 7 7 C 1.38812 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99743 * 192.30735 * 7 2 1 9 9 N 1.36937 * 120.00401 * 12.30134 * 7 2 1 10 10 C 1.46892 * 120.69017 * 210.93228 * 9 7 2 11 11 C 1.53147 * 109.09550 * 235.36169 * 10 9 7 12 12 C 1.53182 * 109.35038 * 303.54612 * 11 10 9 13 13 C 1.52636 * 109.34624 * 59.07213 * 12 11 10 14 14 C 1.53449 * 113.67814 * 74.01344 * 13 12 11 15 15 N 1.47680 * 86.09494 * 137.83401 * 14 13 12 16 16 C 1.34771 * 134.45545 * 155.78226 * 15 14 13 17 17 O 1.21277 * 119.99781 * 184.91045 * 16 15 14 18 18 C 1.50702 * 119.99869 * 4.90722 * 16 15 14 19 19 C 1.52997 * 115.54883 * 41.73787 * 18 16 15 20 20 F 1.39901 * 109.46940 * 184.86022 * 19 18 16 21 21 C 1.52997 * 117.49812 * 256.02787 * 18 16 15 22 22 C 1.52998 * 117.49744 * 187.40307 * 18 16 15 23 23 C 1.47921 * 90.99569 * 335.81966 * 15 14 13 24 24 C 1.47115 * 120.68586 * 30.96074 * 9 7 2 25 25 H 0.96998 * 119.99585 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.53224 * 115.47519 * 10 9 7 27 27 H 1.09000 * 109.59848 * 355.28516 * 10 9 7 28 28 H 1.08996 * 109.49108 * 183.58097 * 11 10 9 29 29 H 1.09001 * 109.50834 * 63.52142 * 11 10 9 30 30 H 1.08997 * 109.49119 * 299.10264 * 12 11 10 31 31 H 1.08998 * 109.48976 * 179.03106 * 12 11 10 32 32 H 1.09000 * 113.79675 * 252.15246 * 14 13 12 33 33 H 1.09001 * 113.79315 * 23.51669 * 14 13 12 34 34 H 1.09003 * 109.47240 * 304.86026 * 19 18 16 35 35 H 1.09003 * 109.47285 * 64.86309 * 19 18 16 36 36 H 1.08995 * 117.50331 * 0.02562 * 21 18 16 37 37 H 1.09002 * 117.49988 * 145.02840 * 21 18 16 38 38 H 1.09001 * 117.49943 * 214.97807 * 22 18 16 39 39 H 1.08996 * 117.49986 * 0.02562 * 22 18 16 40 40 H 1.08993 * 113.69356 * 269.91227 * 23 15 14 41 41 H 1.09001 * 113.96078 * 138.48500 * 23 15 14 42 42 H 1.09004 * 109.64021 * 8.90052 * 24 9 7 43 43 H 1.09003 * 109.63445 * 248.29199 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0717 -1.2130 0.1988 9 7 1.3491 -2.3744 -0.2537 10 6 1.7950 -3.6336 0.3572 11 6 2.0495 -4.6637 -0.7471 12 6 0.7787 -4.8337 -1.5853 13 6 0.3904 -3.4886 -2.1934 14 6 1.2931 -3.0541 -3.3557 15 7 0.0498 -2.6285 -4.0295 16 6 -0.2427 -1.7318 -4.9922 17 8 -1.3980 -1.5258 -5.2981 18 6 0.8659 -0.9853 -5.6885 19 6 2.0961 -1.8191 -6.0519 20 9 3.0832 -0.9848 -6.5875 21 6 1.0936 0.4742 -5.2900 22 6 0.4673 0.1400 -6.6454 23 6 -0.7440 -3.5807 -3.2225 24 6 0.1780 -2.3987 -1.1437 25 1 -0.4849 0.8401 0.0004 26 1 1.0230 -4.0050 1.0312 27 1 2.7153 -3.4633 0.9158 28 1 2.3193 -5.6194 -0.2978 29 1 2.8630 -4.3194 -1.3856 30 1 -0.0308 -5.1929 -0.9500 31 1 0.9625 -5.5537 -2.3827 32 1 1.9631 -2.2307 -3.1082 33 1 1.8007 -3.8816 -3.8513 34 1 2.4805 -2.3087 -5.1571 35 1 1.8192 -2.5734 -6.7884 36 1 0.4419 0.8944 -4.5240 37 1 2.1201 0.8408 -5.2867 38 1 1.0819 0.2866 -7.5336 39 1 -0.5966 0.3406 -6.7710 40 1 -0.8441 -4.5651 -3.6796 41 1 -1.6927 -3.1774 -2.8684 42 1 0.0717 -1.4319 -1.6359 43 1 -0.7184 -2.6183 -0.5637 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982004708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:24:10 Heat of formation + Delta-G solvation = -22.986491 kcal Electronic energy + Delta-G solvation = -25752.889507 eV Core-core repulsion = 22135.227604 eV Total energy + Delta-G solvation = -3617.661903 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.75695 -41.88516 -40.08497 -37.58673 -37.15992 -34.70096 -32.20097 -31.46382 -29.29193 -27.66049 -27.11068 -27.05054 -23.98636 -23.62242 -23.53302 -21.87551 -19.91734 -19.51028 -18.58468 -18.36201 -17.40943 -17.08138 -16.73794 -16.60389 -16.31557 -16.05719 -15.71223 -15.23844 -15.07913 -14.99402 -14.53878 -14.37492 -14.08417 -13.64098 -13.46020 -13.17068 -13.13674 -12.86433 -12.79968 -12.74926 -12.58417 -12.53689 -12.22547 -11.97136 -11.80959 -11.58832 -11.49616 -11.28676 -11.09841 -10.97770 -10.74549 -10.54963 -9.70468 -8.61594 -7.87732 -5.35829 1.34833 1.41131 1.44454 1.53082 1.71632 2.48208 2.59535 3.15342 3.26158 3.33231 3.41297 3.52206 3.68248 3.79098 3.97551 4.04116 4.09747 4.24151 4.33621 4.36428 4.43146 4.52181 4.56127 4.58389 4.62871 4.69806 4.75220 4.81640 4.89097 4.93531 5.04757 5.07128 5.12047 5.22926 5.31346 5.38373 5.49842 5.61165 5.69388 5.76170 6.40386 6.65510 7.00748 7.16064 7.88053 8.40043 9.17746 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.011710 B = 0.007275 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.504527 B = 3847.613482 C = 5008.582042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.047 4.047 3 Si 0.953 3.047 4 H -0.260 1.260 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.250 4.250 8 H 0.069 0.931 9 N -0.605 5.605 10 C 0.135 3.865 11 C -0.122 4.122 12 C -0.088 4.088 13 C -0.106 4.106 14 C 0.122 3.878 15 N -0.636 5.636 16 C 0.568 3.432 17 O -0.587 6.587 18 C -0.203 4.203 19 C 0.108 3.892 20 F -0.214 7.214 21 C -0.151 4.151 22 C -0.122 4.122 23 C 0.115 3.885 24 C 0.213 3.787 25 H 0.244 0.756 26 H 0.009 0.991 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.125 0.875 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.120 0.880 38 H 0.132 0.868 39 H 0.096 0.904 40 H 0.123 0.877 41 H 0.055 0.945 42 H 0.045 0.955 43 H -0.013 1.013 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.824 -10.444 -10.875 16.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.242 4.242 3 Si 0.782 3.218 4 H -0.184 1.184 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.381 4.381 8 H 0.086 0.914 9 N -0.328 5.328 10 C 0.010 3.990 11 C -0.160 4.160 12 C -0.126 4.126 13 C -0.108 4.108 14 C 0.000 4.000 15 N -0.368 5.368 16 C 0.359 3.641 17 O -0.469 6.469 18 C -0.207 4.207 19 C 0.053 3.947 20 F -0.195 7.195 21 C -0.189 4.189 22 C -0.159 4.159 23 C -0.007 4.007 24 C 0.087 3.913 25 H 0.053 0.947 26 H 0.027 0.973 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.143 0.857 34 H 0.113 0.887 35 H 0.125 0.875 36 H 0.092 0.908 37 H 0.138 0.862 38 H 0.150 0.850 39 H 0.115 0.885 40 H 0.141 0.859 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.005 0.995 Dipole moment (debyes) X Y Z Total from point charges 5.137 -10.054 -11.157 15.872 hybrid contribution -0.303 1.671 0.623 1.809 sum 4.833 -8.382 -10.534 14.303 Atomic orbital electron populations 1.70157 1.06676 1.25258 1.56067 1.25789 0.95848 1.01223 1.01339 0.85411 0.79174 0.80714 0.76522 1.18396 1.22237 1.22320 1.19480 0.91472 0.85098 1.42026 0.91362 1.44235 1.33224 1.03821 1.51535 1.21126 0.97000 0.86558 0.94343 1.21891 0.97603 0.98858 0.97682 1.21317 0.97901 0.93562 0.99835 1.22643 0.95190 0.98540 0.94418 1.23425 0.87896 0.99467 0.89182 1.50037 1.13402 1.37244 1.36155 1.19204 0.88353 0.78728 0.77856 1.90636 1.22656 1.66996 1.66589 1.22147 0.98422 0.92451 1.07668 1.21488 0.82401 0.90081 1.00717 1.92745 1.63608 1.74875 1.88266 1.22973 1.03486 0.93132 0.99265 1.23062 1.02393 0.96504 0.93928 1.23440 0.95904 0.93055 0.88278 1.20089 0.87347 0.95149 0.88710 0.94664 0.97289 0.93061 0.89603 0.91848 0.91984 0.88562 0.91458 0.85718 0.88748 0.87503 0.90796 0.86160 0.85000 0.88532 0.85923 0.92683 0.93688 0.99519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.94 11.17 21.65 0.24 -55.70 16 2 C -0.05 -2.57 5.01 84.86 0.43 -2.15 16 3 Si 0.95 44.89 29.57 68.60 2.03 46.92 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 7 C -0.25 -13.15 9.58 84.03 0.80 -12.35 16 8 H 0.07 3.49 7.86 -2.91 -0.02 3.46 16 9 N -0.61 -28.28 2.99 -699.54 -2.09 -30.37 16 10 C 0.13 5.01 6.45 86.35 0.56 5.57 16 11 C -0.12 -3.16 6.01 30.70 0.18 -2.97 16 12 C -0.09 -2.12 5.07 30.53 0.15 -1.97 16 13 C -0.11 -3.33 0.87 -52.04 -0.05 -3.37 16 14 C 0.12 3.41 5.23 86.30 0.45 3.86 16 15 N -0.64 -20.72 3.44 -839.83 -2.89 -23.61 16 16 C 0.57 20.61 7.55 87.66 0.66 21.27 16 17 O -0.59 -25.63 17.02 -3.02 -0.05 -25.68 16 18 C -0.20 -6.02 2.47 -52.93 -0.13 -6.15 16 19 C 0.11 2.42 7.36 71.98 0.53 2.95 16 20 F -0.21 -5.22 15.94 44.97 0.72 -4.50 16 21 C -0.15 -4.73 9.66 30.59 0.30 -4.43 16 22 C -0.12 -3.30 9.50 30.59 0.29 -3.01 16 23 C 0.12 3.44 7.99 86.25 0.69 4.13 16 24 C 0.21 9.74 4.29 86.19 0.37 10.11 16 25 H 0.24 14.47 8.31 -92.71 -0.77 13.70 16 26 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.05 1.89 7.93 -2.39 -0.02 1.87 16 28 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.06 1.62 7.93 -2.39 -0.02 1.61 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.10 1.58 8.12 -2.39 -0.02 1.56 16 32 H 0.07 2.27 7.82 -2.39 -0.02 2.25 16 33 H 0.13 2.34 7.90 -2.39 -0.02 2.32 16 34 H 0.09 1.98 5.36 -2.39 -0.01 1.97 16 35 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.12 3.43 7.64 -2.39 -0.02 3.41 16 38 H 0.13 2.83 7.93 -2.39 -0.02 2.81 16 39 H 0.10 2.87 7.69 -2.39 -0.02 2.85 16 40 H 0.12 2.64 8.09 -2.39 -0.02 2.62 16 41 H 0.05 1.93 8.09 -2.39 -0.02 1.91 16 42 H 0.04 2.45 6.14 -2.38 -0.01 2.44 16 43 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 Total: -1.00 -70.99 344.15 4.19 -66.80 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.99 Total: 14.67 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 5.24 Total: 11.48 kcal Atomic # 7 Polarization: -104.94 SS G_CDS: -4.74 Total: -109.68 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.05 Total: -25.68 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.72 Total: -4.50 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -70.99 4.19 -66.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982004708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.813 kcal (2) G-P(sol) polarization free energy of solvation -70.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds