Wall clock time and date at job start Fri Apr 10 2020 20:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42903 * 109.47556 * 2 1 4 4 C 1.35999 * 117.00037 * 180.02562 * 3 2 1 5 5 C 1.39688 * 125.66876 * 179.97438 * 4 3 2 6 6 C 1.37980 * 107.63737 * 180.02562 * 5 4 3 7 7 C 1.47173 * 126.43746 * 179.97438 * 6 5 4 8 8 O 1.21636 * 119.99923 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00481 * 180.02562 * 7 6 5 10 10 C 1.46490 * 120.00384 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47559 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.46613 * 54.99525 * 11 10 9 13 13 C 1.53001 * 109.47108 * 295.00069 * 11 10 9 14 14 C 1.52996 * 109.47530 * 174.99686 * 11 10 9 15 15 N 1.46498 * 109.47059 * 184.99929 * 14 11 10 16 16 C 1.36943 * 119.99752 * 179.72430 * 15 14 11 17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 14 18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 14 19 19 N 1.31611 * 120.00081 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99814 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47483 * 90.00178 * 20 18 16 22 22 H 1.48498 * 109.47011 * 210.00042 * 20 18 16 23 23 H 1.48502 * 109.47495 * 329.99664 * 20 18 16 24 24 N 1.36672 * 107.12794 * 0.24219 * 6 5 4 25 25 H 0.97001 * 126.09565 * 179.75725 * 24 6 5 26 26 N 1.31213 * 125.67323 * 0.04412 * 4 3 2 27 27 H 1.09001 * 109.47194 * 299.99913 * 1 2 3 28 28 H 1.09006 * 109.47077 * 60.00098 * 1 2 3 29 29 H 1.09000 * 109.47564 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46994 * 240.00356 * 2 1 3 31 31 H 1.08997 * 109.47179 * 120.00189 * 2 1 3 32 32 H 1.08002 * 126.18368 * 0.05888 * 5 4 3 33 33 H 0.97002 * 119.99300 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.47374 * 59.99359 * 10 9 7 35 35 H 1.09002 * 109.47263 * 299.99603 * 10 9 7 36 36 H 1.09001 * 109.46786 * 59.99727 * 13 11 10 37 37 H 1.09001 * 109.47309 * 179.97438 * 13 11 10 38 38 H 1.08995 * 109.46988 * 299.99895 * 13 11 10 39 39 H 1.09004 * 109.47066 * 65.00196 * 14 11 10 40 40 H 1.08994 * 109.46974 * 305.00344 * 14 11 10 41 41 H 0.97001 * 120.00384 * 0.02562 * 15 14 11 42 42 H 0.97008 * 120.00329 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3547 1.5254 -0.0005 5 6 4.0136 2.7571 -0.0011 6 6 5.3703 2.5055 -0.0022 7 6 6.4456 3.5102 -0.0036 8 8 6.1708 4.6952 -0.0044 9 7 7.7349 3.1176 -0.0050 10 6 8.8053 4.1177 -0.0070 11 6 10.1628 3.4120 -0.0076 12 1 10.2124 2.7205 -0.8489 13 6 10.3354 2.6371 1.3003 14 6 11.2781 4.4515 -0.1355 15 7 12.5693 3.7701 -0.2561 16 6 13.7196 4.5013 -0.3888 17 1 13.6752 5.5804 -0.4000 18 6 14.9425 3.8556 -0.5089 19 7 16.0480 4.5583 -0.6359 20 14 15.0190 1.9893 -0.4903 21 1 14.8920 1.4747 -1.8775 22 1 16.3176 1.5528 0.0826 23 1 13.9082 1.4565 0.3389 24 7 5.5279 1.1479 -0.0077 25 1 6.3723 0.6706 -0.0129 26 7 4.2529 0.5688 -0.0019 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 3.5457 3.7305 -0.0004 33 1 7.9540 2.1726 -0.0047 34 1 8.7210 4.7419 0.8827 35 1 8.7189 4.7406 -0.8973 36 1 9.5408 1.8964 1.3913 37 1 11.3023 2.1339 1.2997 38 1 10.2857 3.3284 2.1415 39 1 11.2845 5.0882 0.7493 40 1 11.1054 5.0625 -1.0214 41 1 12.6091 2.8010 -0.2464 42 1 16.9027 4.1071 -0.7194 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753620764.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:25:39 Heat of formation + Delta-G solvation = 8.694108 kcal Electronic energy + Delta-G solvation = -22801.138812 eV Core-core repulsion = 19204.770644 eV Total energy + Delta-G solvation = -3596.368167 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.80456 -39.80778 -38.58180 -37.11912 -34.73581 -32.87619 -32.35513 -31.07101 -30.49089 -30.40033 -26.95662 -25.92116 -24.38080 -23.11765 -21.97288 -21.52513 -20.78185 -20.26861 -19.15929 -17.56006 -17.41524 -16.77728 -16.38683 -16.00955 -15.83167 -15.03495 -14.78521 -14.46141 -14.34140 -14.10589 -13.92344 -13.76304 -13.31127 -13.07190 -13.04324 -12.69446 -12.56961 -12.31237 -12.13944 -11.53953 -11.32113 -11.30620 -11.14386 -10.85300 -10.74361 -10.73814 -10.38930 -10.16905 -9.63251 -9.61454 -9.34962 -9.07743 -8.95723 -7.29142 -5.81311 -3.17508 0.67723 1.97312 2.15156 2.47877 2.87644 2.98618 3.30519 3.33244 3.40197 4.20789 4.28519 4.52772 4.53531 4.58768 4.69589 4.86903 4.95390 4.98479 5.02432 5.09580 5.34850 5.35820 5.48539 5.53721 5.55829 5.63224 5.71786 5.73365 5.74524 5.90408 6.06763 6.16402 6.35349 6.45427 6.56894 6.65483 6.83804 7.00654 7.15012 7.71629 7.94556 8.37287 9.15869 9.87799 10.06930 11.37019 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.036662 B = 0.002253 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.541543 B =12426.557532 C =13026.077265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.287 6.287 4 C 0.262 3.738 5 C -0.192 4.192 6 C 0.063 3.937 7 C 0.582 3.418 8 O -0.510 6.510 9 N -0.718 5.718 10 C 0.126 3.874 11 C -0.116 4.116 12 H 0.077 0.923 13 C -0.145 4.145 14 C 0.165 3.835 15 N -0.754 5.754 16 C -0.246 4.246 17 H 0.091 0.909 18 C 0.005 3.995 19 N -0.933 5.933 20 Si 0.885 3.115 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.278 1.278 24 N -0.449 5.449 25 H 0.445 0.555 26 N -0.316 5.316 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.168 0.832 33 H 0.396 0.604 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.032 0.968 40 H 0.031 0.969 41 H 0.360 0.640 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.642 -10.722 2.196 30.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.192 6.192 4 C 0.059 3.941 5 C -0.223 4.223 6 C -0.068 4.068 7 C 0.365 3.635 8 O -0.383 6.383 9 N -0.370 5.370 10 C 0.003 3.997 11 C -0.135 4.135 12 H 0.095 0.905 13 C -0.202 4.202 14 C 0.037 3.963 15 N -0.400 5.400 16 C -0.376 4.376 17 H 0.109 0.891 18 C -0.191 4.191 19 N -0.580 5.580 20 Si 0.716 3.284 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.205 1.205 24 N -0.167 5.167 25 H 0.291 0.709 26 N -0.159 5.159 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.186 0.814 33 H 0.231 0.769 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.193 0.807 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -28.801 -10.624 2.182 30.775 hybrid contribution 0.749 -1.555 -0.011 1.726 sum -28.052 -12.178 2.171 30.658 Atomic orbital electron populations 1.21801 0.92512 1.03050 1.03620 1.22757 0.95597 0.81018 1.02323 1.86331 1.13624 1.29873 1.89365 1.20235 0.84505 0.91909 0.97483 1.21096 0.89684 0.98368 1.13123 1.21306 0.95434 0.84365 1.05695 1.17007 0.81531 0.87233 0.77698 1.90892 1.82773 1.15992 1.48686 1.45953 1.05474 1.10849 1.74677 1.21533 0.84479 0.90316 1.03378 1.21633 0.93784 0.99005 0.99075 0.90472 1.21838 1.01639 0.99754 0.97010 1.20548 0.83941 0.92769 0.99039 1.42671 1.02522 1.04511 1.90296 1.19063 0.83570 0.92531 1.42404 0.89126 1.24678 0.95290 0.97217 1.01940 1.69697 0.97499 1.34123 1.56726 0.86549 0.76861 0.87306 0.77733 1.21100 1.21692 1.20454 1.46077 1.06983 1.03477 1.60148 0.70886 1.77334 0.88098 1.20199 1.30282 0.91416 0.91404 0.90155 0.91666 0.91674 0.81425 0.76945 0.90441 0.90413 0.93876 0.91584 0.92150 0.95010 0.95081 0.80654 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.28 37.16 0.38 -0.35 16 2 C 0.06 0.41 6.33 37.16 0.24 0.65 16 3 O -0.29 -2.85 10.22 -19.74 -0.20 -3.05 16 4 C 0.26 2.82 7.85 -17.27 -0.14 2.68 16 5 C -0.19 -2.05 10.63 -39.13 -0.42 -2.47 16 6 C 0.06 0.63 7.12 -82.18 -0.59 0.04 16 7 C 0.58 6.55 7.81 -12.63 -0.10 6.45 16 8 O -0.51 -7.55 16.90 5.25 0.09 -7.46 16 9 N -0.72 -6.71 5.28 -61.47 -0.32 -7.03 16 10 C 0.13 1.42 5.06 -4.05 -0.02 1.40 16 11 C -0.12 -1.48 2.46 -90.62 -0.22 -1.70 16 12 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 13 C -0.15 -1.76 8.94 37.16 0.33 -1.43 16 14 C 0.16 2.92 5.65 -4.04 -0.02 2.90 16 15 N -0.75 -17.01 5.13 -59.91 -0.31 -17.32 16 16 C -0.25 -6.82 10.47 -15.06 -0.16 -6.97 16 17 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 18 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 19 N -0.93 -28.97 13.97 55.49 0.78 -28.19 16 20 Si 0.89 21.50 27.74 -169.99 -4.71 16.79 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 24 N -0.45 -3.74 7.33 33.41 0.24 -3.50 16 25 H 0.45 2.28 8.23 -182.65 -1.50 0.77 16 26 N -0.32 -3.25 12.05 30.45 0.37 -2.89 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.40 2.64 6.83 -40.82 -0.28 2.36 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.04 0.39 7.18 -51.93 -0.37 0.02 16 37 H 0.07 0.95 7.18 -51.93 -0.37 0.58 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.36 7.84 4.71 -40.82 -0.19 7.65 16 42 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -34.21 355.58 -6.91 -41.12 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -7.38 Total: 4.95 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -0.81 Total: 1.23 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: 0.75 Total: -58.93 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: -0.11 Total: -10.51 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.71 Total: 16.79 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.21 -6.91 -41.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753620764.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.812 kcal (2) G-P(sol) polarization free energy of solvation -34.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds