Wall clock time and date at job start Fri Apr 10 2020 20:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47435 * 2 1 4 4 C 1.53001 * 109.47399 * 172.81839 * 3 2 1 5 5 C 1.53002 * 109.46824 * 52.81967 * 3 2 1 6 6 N 1.46495 * 109.47581 * 292.82066 * 3 2 1 7 7 C 1.46498 * 120.00502 * 138.89260 * 6 3 2 8 8 C 1.50703 * 109.47096 * 274.72679 * 7 6 3 9 9 H 1.07999 * 120.00011 * 4.92698 * 8 7 6 10 10 C 1.37877 * 120.00177 * 184.92748 * 8 7 6 11 11 N 1.31516 * 119.99858 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00138 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47413 * 89.99949 * 12 10 8 14 14 H 1.48497 * 109.47411 * 209.99866 * 12 10 8 15 15 H 1.48498 * 109.47343 * 329.99745 * 12 10 8 16 16 C 1.34785 * 120.00007 * 318.89275 * 6 3 2 17 17 O 1.21273 * 120.00007 * 178.55477 * 16 6 3 18 18 C 1.50703 * 119.99588 * 358.83347 * 16 6 3 19 19 C 1.53000 * 110.89027 * 89.55069 * 18 16 6 20 20 C 1.54767 * 111.00619 * 213.44907 * 18 16 6 21 21 C 1.51690 * 102.47714 * 142.01392 * 20 18 16 22 22 C 1.50700 * 125.77061 * 164.69759 * 21 20 18 23 23 N 1.27644 * 108.45700 * 344.71705 * 21 20 18 24 24 O 1.41379 * 113.17699 * 359.67787 * 23 21 20 25 25 H 1.08996 * 109.47055 * 179.28277 * 1 2 3 26 26 H 1.09004 * 109.46667 * 299.28365 * 1 2 3 27 27 H 1.09005 * 109.47415 * 59.27862 * 1 2 3 28 28 H 1.09004 * 109.46832 * 240.00762 * 2 1 3 29 29 H 1.08993 * 109.47371 * 120.00676 * 2 1 3 30 30 H 1.09000 * 109.47086 * 215.32066 * 4 3 2 31 31 H 1.09002 * 109.46648 * 335.31809 * 4 3 2 32 32 H 1.08993 * 109.47118 * 95.31561 * 4 3 2 33 33 H 1.09007 * 109.47188 * 303.62090 * 5 3 2 34 34 H 1.08998 * 109.47130 * 63.62101 * 5 3 2 35 35 H 1.09002 * 109.47406 * 183.62444 * 5 3 2 36 36 H 1.08996 * 109.47021 * 34.72436 * 7 6 3 37 37 H 1.08994 * 109.47669 * 154.72925 * 7 6 3 38 38 H 0.97001 * 119.99946 * 180.02562 * 11 10 8 39 39 H 1.08999 * 109.46871 * 96.77306 * 19 18 16 40 40 H 1.09004 * 109.46895 * 216.76924 * 19 18 16 41 41 H 1.08992 * 109.47290 * 336.76490 * 19 18 16 42 42 H 1.09005 * 110.80619 * 260.25559 * 20 18 16 43 43 H 1.08998 * 110.81466 * 23.57148 * 20 18 16 44 44 H 1.09003 * 109.46925 * 90.00256 * 22 21 20 45 45 H 1.09004 * 109.46628 * 209.99982 * 22 21 20 46 46 H 1.08993 * 109.46901 * 329.99679 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5594 1.4462 0.1803 5 6 1.3882 2.2138 1.1493 6 7 1.6979 2.0815 -1.2730 7 6 1.2189 3.4658 -1.2924 8 6 -0.2691 3.4859 -1.0547 9 1 -0.7918 2.5690 -0.8254 10 6 -0.9633 4.6748 -1.1300 11 7 -0.3268 5.7914 -1.4088 12 14 -2.8076 4.6998 -0.8347 13 1 -3.0749 4.9222 0.6090 14 1 -3.4209 5.7963 -1.6263 15 1 -3.3934 3.4006 -1.2521 16 6 1.8237 1.3958 -2.4266 17 8 1.5156 1.9160 -3.4779 18 6 2.3413 -0.0194 -2.4092 19 6 1.1936 -1.0182 -2.2481 20 6 3.1673 -0.3237 -3.6822 21 6 4.2889 -1.1924 -3.1453 22 6 5.2132 -2.0484 -3.9724 23 7 4.3172 -1.0761 -1.8745 24 8 3.3306 -0.1956 -1.3742 25 1 -0.3633 -1.0275 -0.0129 26 1 -0.3633 0.5027 0.8964 27 1 -0.3634 0.5250 -0.8835 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 3.8523 2.3096 0.7777 31 1 3.8672 0.5320 0.6878 32 1 4.0410 1.4996 -0.7960 33 1 0.3036 2.1567 1.0562 34 1 1.6947 1.7773 2.0999 35 1 1.7017 3.2571 1.1107 36 1 1.7197 4.0345 -0.5089 37 1 1.4379 3.9126 -2.2621 38 1 -0.8151 6.6279 -1.4614 39 1 0.9005 -1.3959 -3.2276 40 1 1.5196 -1.8482 -1.6213 41 1 0.3432 -0.5221 -1.7805 42 1 2.5686 -0.8708 -4.4106 43 1 3.5598 0.5950 -4.1180 44 1 6.0888 -1.4657 -4.2588 45 1 5.5275 -2.9132 -3.3880 46 1 4.6919 -2.3852 -4.8683 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000904678607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:26:29 Heat of formation + Delta-G solvation = 76.996813 kcal Electronic energy + Delta-G solvation = -27293.159845 eV Core-core repulsion = 23803.293848 eV Total energy + Delta-G solvation = -3489.865996 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.80996 -38.77738 -36.96774 -34.61212 -33.32054 -32.61869 -31.53629 -29.94395 -28.77736 -27.81269 -26.94987 -25.99498 -23.90181 -23.19792 -21.85224 -20.33477 -20.07078 -17.88821 -16.59124 -16.46281 -15.84214 -15.58872 -15.45295 -15.08374 -14.56229 -14.22114 -14.01757 -13.65993 -13.37823 -13.21378 -13.08663 -12.88335 -12.53683 -12.34030 -12.06735 -12.02751 -11.76218 -11.72710 -11.54328 -11.35063 -11.06380 -11.00846 -10.81769 -10.70061 -10.55724 -10.45021 -10.32125 -10.20918 -9.99353 -9.53038 -9.43745 -9.26060 -8.67680 -8.40895 -7.61192 -6.02417 -4.06169 1.84116 3.04426 3.24351 3.29853 3.36947 3.40163 3.71206 4.19261 4.36541 4.44954 4.47563 4.82846 4.93184 5.22184 5.24132 5.27704 5.32150 5.36069 5.44669 5.57030 5.60251 5.63219 5.70679 5.77887 5.83058 6.01407 6.05323 6.14645 6.23596 6.26133 6.36765 6.45620 6.46663 6.55903 6.68369 6.79734 6.85767 7.10386 7.16890 7.45392 7.48801 7.60631 7.93721 8.24787 8.43261 8.86746 9.03064 9.57767 11.05757 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.022413 B = 0.005572 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.002691 B = 5023.951038 C = 5284.853032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.199 4.199 3 C 0.172 3.828 4 C -0.141 4.141 5 C -0.148 4.148 6 N -0.570 5.570 7 C 0.242 3.758 8 C -0.519 4.519 9 H 0.061 0.939 10 C 0.062 3.938 11 N -0.893 5.893 12 Si 0.893 3.107 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.522 3.478 17 O -0.535 6.535 18 C 0.045 3.955 19 C -0.182 4.182 20 C -0.132 4.132 21 C 0.083 3.917 22 C -0.085 4.085 23 N -0.314 5.314 24 O -0.157 6.157 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.146 0.854 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.033 0.967 37 H 0.046 0.954 38 H 0.262 0.738 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.252 -15.714 -0.921 17.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.235 4.235 3 C 0.086 3.914 4 C -0.199 4.199 5 C -0.205 4.205 6 N -0.300 5.300 7 C 0.124 3.876 8 C -0.558 4.558 9 H 0.079 0.921 10 C -0.140 4.140 11 N -0.533 5.533 12 Si 0.721 3.279 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.199 1.199 16 C 0.305 3.695 17 O -0.413 6.413 18 C 0.002 3.998 19 C -0.238 4.238 20 C -0.172 4.172 21 C -0.111 4.111 22 C -0.143 4.143 23 N -0.059 5.059 24 O -0.173 6.173 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.162 0.838 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.126 0.874 44 H 0.105 0.895 45 H 0.100 0.900 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.505 -15.368 -0.339 17.568 hybrid contribution -1.588 0.496 -0.367 1.704 sum 6.917 -14.872 -0.706 16.417 Atomic orbital electron populations 1.22082 0.96453 1.00248 1.02813 1.23920 0.95677 0.97348 1.06593 1.20336 0.94104 0.92321 0.84590 1.22385 0.95018 1.00544 1.01984 1.22205 1.02833 1.00368 0.95144 1.48405 1.61748 1.15540 1.04277 1.19358 0.94351 0.75187 0.98753 1.21424 0.92678 0.93882 1.47822 0.92066 1.24916 0.98305 0.95547 0.95243 1.69935 1.35949 0.98623 1.48744 0.86576 0.85528 0.77759 0.78040 1.20678 1.21194 1.19941 1.19465 0.79692 0.85404 0.84929 1.90703 1.51327 1.68615 1.30672 1.23111 0.92058 0.96969 0.87654 1.22988 0.99193 0.98522 1.03120 1.22981 0.94484 1.00982 0.98723 1.26180 0.96526 0.95419 0.92941 1.20401 0.97334 0.98152 0.98401 1.77756 1.08784 1.06904 1.12418 1.92040 1.29784 1.62936 1.32532 0.93636 0.92158 0.91305 0.83805 0.91710 0.93680 0.91965 0.91715 0.90320 0.93354 0.91483 0.94881 0.93612 0.92806 0.91729 0.90530 0.87495 0.87683 0.87404 0.89455 0.89993 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 7.14 37.16 0.27 -2.30 16 2 C -0.20 -3.18 3.32 -26.73 -0.09 -3.27 16 3 C 0.17 3.13 0.67 -131.82 -0.09 3.04 16 4 C -0.14 -2.40 7.71 37.16 0.29 -2.11 16 5 C -0.15 -2.73 6.72 37.16 0.25 -2.49 16 6 N -0.57 -12.33 1.92 -160.19 -0.31 -12.64 16 7 C 0.24 6.29 4.61 -5.19 -0.02 6.26 16 8 C -0.52 -14.14 7.88 -34.44 -0.27 -14.41 16 9 H 0.06 1.64 6.24 -52.49 -0.33 1.31 16 10 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 11 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 12 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 16 C 0.52 11.05 5.68 -10.98 -0.06 10.98 16 17 O -0.54 -13.26 15.84 5.56 0.09 -13.17 16 18 C 0.05 0.73 0.73 -90.84 -0.07 0.66 16 19 C -0.18 -2.58 7.57 37.16 0.28 -2.30 16 20 C -0.13 -1.78 5.85 -26.46 -0.15 -1.93 16 21 C 0.08 0.96 7.45 -78.57 -0.59 0.37 16 22 C -0.09 -0.60 10.49 36.01 0.38 -0.22 16 23 N -0.31 -4.47 12.45 35.65 0.44 -4.02 16 24 O -0.16 -2.51 3.81 -11.36 -0.04 -2.55 16 25 H 0.04 0.61 7.98 -51.93 -0.41 0.20 16 26 H 0.06 0.98 6.29 -51.93 -0.33 0.66 16 27 H 0.07 1.30 5.06 -51.93 -0.26 1.04 16 28 H 0.15 2.26 0.43 -137.41 -0.06 2.20 16 29 H 0.06 0.96 7.95 -51.93 -0.41 0.55 16 30 H 0.04 0.74 7.76 -51.93 -0.40 0.34 16 31 H 0.06 0.97 7.22 -51.93 -0.38 0.60 16 32 H 0.06 1.18 6.17 -51.93 -0.32 0.86 16 33 H 0.08 1.56 4.88 -51.93 -0.25 1.31 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.35 6.33 -51.93 -0.33 1.02 16 36 H 0.03 0.88 6.40 -51.93 -0.33 0.55 16 37 H 0.05 1.36 7.30 -51.93 -0.38 0.98 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.06 0.80 7.46 -51.93 -0.39 0.41 16 40 H 0.08 0.98 7.34 -51.93 -0.38 0.59 16 41 H 0.11 1.68 3.05 -51.93 -0.16 1.52 16 42 H 0.10 1.18 7.49 -51.93 -0.39 0.79 16 43 H 0.11 1.59 7.66 -51.93 -0.40 1.19 16 44 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 333.33 15.07 5.02 5.02 Total: -1.00 -31.93 333.33 -5.79 -37.72 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -6.73 Total: 4.73 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 0.02 Total: -6.07 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.87 Total: -42.25 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: 0.04 Total: -15.72 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.93 -5.79 -37.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904678607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.716 kcal (2) G-P(sol) polarization free energy of solvation -31.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds