Wall clock time and date at job start Fri Apr 10 2020 20:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.33351 * 117.94524 * 2 1 4 4 O 1.21288 * 118.24880 * 2.24899 * 3 2 1 5 5 C 1.50179 * 123.50890 * 182.22076 * 3 2 1 6 6 C 1.53069 * 109.89052 * 342.42298 * 5 3 2 7 7 C 1.53344 * 108.42699 * 48.89550 * 6 5 3 8 8 C 1.45756 * 117.94764 * 180.02562 * 2 1 3 9 9 H 1.09002 * 109.29505 * 281.23791 * 8 2 1 10 10 C 1.50693 * 109.30042 * 40.81612 * 8 2 1 11 11 O 1.21285 * 120.00045 * 28.55139 * 10 8 2 12 12 N 1.34773 * 120.00399 * 208.54858 * 10 8 2 13 13 C 1.46498 * 120.00720 * 180.02562 * 12 10 8 14 14 C 1.52993 * 109.47626 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.46831 * 299.99862 * 14 13 12 16 16 C 1.52995 * 109.47304 * 59.99842 * 14 13 12 17 17 C 1.52994 * 109.47604 * 180.02562 * 14 13 12 18 18 C 1.50694 * 109.47479 * 180.02562 * 17 14 13 19 19 H 1.08002 * 120.00188 * 359.97438 * 18 17 14 20 20 C 1.37878 * 120.00150 * 179.97438 * 18 17 14 21 21 N 1.31517 * 120.00087 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00313 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46745 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47360 * 119.99329 * 22 20 18 25 25 H 1.48498 * 109.47024 * 240.00050 * 22 20 18 26 26 H 1.08994 * 109.47164 * 84.80274 * 1 2 3 27 27 H 1.08997 * 109.46990 * 204.80759 * 1 2 3 28 28 H 1.08998 * 109.47239 * 324.80263 * 1 2 3 29 29 H 1.09000 * 109.40237 * 222.29031 * 5 3 2 30 30 H 1.09001 * 109.39848 * 102.54859 * 5 3 2 31 31 H 1.08998 * 109.67456 * 168.63311 * 6 5 3 32 32 H 1.08999 * 109.67017 * 289.16469 * 6 5 3 33 33 H 1.09000 * 109.59968 * 52.22468 * 7 6 5 34 34 H 1.08993 * 109.60401 * 172.71487 * 7 6 5 35 35 H 0.97004 * 119.99735 * 0.02562 * 12 10 8 36 36 H 1.09000 * 109.46943 * 300.00411 * 13 12 10 37 37 H 1.09002 * 109.46830 * 59.99996 * 13 12 10 38 38 H 1.09006 * 109.47087 * 60.00343 * 15 14 13 39 39 H 1.09000 * 109.47031 * 179.97438 * 15 14 13 40 40 H 1.09000 * 109.47727 * 299.99637 * 15 14 13 41 41 H 1.09007 * 109.47197 * 60.00105 * 16 14 13 42 42 H 1.09000 * 109.47374 * 180.02562 * 16 14 13 43 43 H 1.09006 * 109.47346 * 300.00104 * 16 14 13 44 44 H 1.09011 * 109.46913 * 299.99684 * 17 14 13 45 45 H 1.08996 * 109.47809 * 59.99342 * 17 14 13 46 46 H 0.97001 * 120.00202 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.0900 1.1780 0.0000 4 8 1.4159 2.1854 0.0419 5 6 3.5839 1.3241 -0.0485 6 6 4.2493 0.0014 0.3396 7 6 3.5949 -1.1259 -0.4682 8 6 2.1482 -1.2876 -0.0006 9 1 2.1399 -1.7002 1.0083 10 6 1.4308 -2.2316 -0.9306 11 8 0.8200 -1.7964 -1.8838 12 7 1.4679 -3.5595 -0.7034 13 6 0.7709 -4.4774 -1.6078 14 6 0.9699 -5.9162 -1.1272 15 6 2.4635 -6.2479 -1.1154 16 6 0.4033 -6.0647 0.2862 17 6 0.2426 -6.8747 -2.0721 18 6 0.4380 -8.2919 -1.5984 19 1 1.0229 -8.4892 -0.7121 20 6 -0.1298 -9.3366 -2.2963 21 7 -0.8425 -9.0964 -3.3752 22 14 0.1130 -11.0934 -1.7094 23 1 0.9489 -11.0941 -0.4820 24 1 -1.2078 -11.7022 -1.4097 25 1 0.7916 -11.8802 -2.7703 26 1 -0.3633 0.0931 -1.0234 27 1 -0.3633 -0.9328 0.4312 28 1 -0.3633 0.8398 0.5923 29 1 3.8943 2.1035 0.6473 30 1 3.8881 1.5998 -1.0583 31 1 5.3143 0.0456 0.1118 32 1 4.1087 -0.1813 1.4050 33 1 3.6101 -0.8725 -1.5282 34 1 4.1384 -2.0563 -0.3043 35 1 1.9561 -3.9076 0.0592 36 1 -0.2932 -4.2412 -1.6159 37 1 1.1743 -4.3712 -2.6148 38 1 2.9821 -5.5651 -0.4424 39 1 2.6053 -7.2729 -0.7726 40 1 2.8672 -6.1422 -2.1223 41 1 -0.6608 -5.8283 0.2778 42 1 0.5454 -7.0897 0.6288 43 1 0.9219 -5.3819 0.9592 44 1 -0.8216 -6.6385 -2.0809 45 1 0.6465 -6.7689 -3.0789 46 1 -1.2424 -9.8313 -3.8660 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908214708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:26:33 Heat of formation + Delta-G solvation = -91.013834 kcal Electronic energy + Delta-G solvation = -24811.707475 eV Core-core repulsion = 21314.555990 eV Total energy + Delta-G solvation = -3497.151485 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.12765 -39.41253 -37.37063 -36.32534 -34.35430 -33.71065 -32.20141 -30.37326 -27.40428 -27.16826 -26.60395 -26.53830 -24.91809 -22.88157 -22.59611 -20.60581 -19.04861 -18.51841 -17.28491 -16.88899 -16.69144 -16.35970 -15.72988 -15.16549 -15.06870 -14.58462 -14.54732 -14.29056 -13.87843 -13.67194 -13.53015 -13.19588 -12.84577 -12.66808 -12.45656 -12.30694 -12.13978 -12.12028 -11.80352 -11.42295 -11.33212 -11.23083 -11.08814 -10.89320 -10.71950 -10.49301 -10.31152 -10.25777 -9.96490 -9.79692 -9.28710 -9.00295 -8.92837 -8.78062 -8.41517 -6.05269 -4.06913 2.36816 2.43822 2.80491 3.24259 3.26281 3.34818 3.36612 4.19346 4.26988 4.34983 4.39505 4.41023 4.72385 4.81822 5.00868 5.21359 5.30299 5.30835 5.34477 5.40780 5.44842 5.48892 5.52580 5.56789 5.64998 5.74953 5.89174 6.06435 6.08652 6.11922 6.17636 6.28738 6.42366 6.54522 6.64064 6.97252 6.99175 7.03893 7.18792 7.53420 7.58145 7.69016 7.93019 7.94319 8.20472 8.34625 8.98127 9.56711 11.06156 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.035832 B = 0.002928 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.228238 B = 9559.269058 C = 9892.742190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.586 5.586 3 C 0.519 3.481 4 O -0.554 6.554 5 C -0.135 4.135 6 C -0.121 4.121 7 C -0.128 4.128 8 C 0.127 3.873 9 H 0.095 0.905 10 C 0.497 3.503 11 O -0.529 6.529 12 N -0.715 5.715 13 C 0.128 3.872 14 C -0.073 4.073 15 C -0.127 4.127 16 C -0.127 4.127 17 C 0.036 3.964 18 C -0.512 4.512 19 H 0.060 0.940 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.889 3.111 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.399 0.601 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.028 0.972 39 H 0.067 0.933 40 H 0.048 0.952 41 H 0.047 0.953 42 H 0.068 0.932 43 H 0.028 0.972 44 H 0.018 0.982 45 H 0.018 0.982 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.788 15.156 9.821 21.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.319 5.319 3 C 0.307 3.693 4 O -0.433 6.433 5 C -0.175 4.175 6 C -0.158 4.158 7 C -0.166 4.166 8 C 0.019 3.981 9 H 0.113 0.887 10 C 0.280 3.720 11 O -0.405 6.405 12 N -0.367 5.367 13 C 0.005 3.995 14 C -0.073 4.073 15 C -0.184 4.184 16 C -0.184 4.184 17 C -0.001 4.001 18 C -0.550 4.550 19 H 0.078 0.922 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.717 3.283 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.235 0.765 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.047 0.953 44 H 0.036 0.964 45 H 0.037 0.963 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.892 15.899 9.005 20.778 hybrid contribution 0.216 -1.446 0.477 1.538 sum 10.109 14.453 9.482 20.025 Atomic orbital electron populations 1.21729 0.78772 1.02276 1.03240 1.46918 1.07814 1.04624 1.72501 1.20127 0.90960 0.82378 0.75815 1.90720 1.66623 1.35400 1.50512 1.21685 0.91008 0.99743 1.05067 1.21660 1.00529 0.93077 1.00578 1.21873 0.92029 1.00977 1.01747 1.20992 0.93384 0.84140 0.99559 0.88748 1.20625 0.81685 0.83321 0.86371 1.90741 1.42753 1.76988 1.29991 1.46218 1.53745 1.05727 1.31030 1.21674 0.96495 0.88642 0.92644 1.20914 0.96611 0.92389 0.97407 1.21765 0.94780 1.01494 1.00383 1.21766 0.99847 1.01668 0.95161 1.19090 0.95039 0.92612 0.93407 1.21204 1.31892 0.90985 1.10924 0.92187 1.25019 0.95368 0.99068 0.95042 1.69972 1.34173 1.31695 1.17475 0.86594 0.77858 0.85197 0.78679 1.19789 1.21112 1.21116 0.91302 0.91583 0.90685 0.88007 0.88077 0.89803 0.90713 0.89951 0.88797 0.76538 0.91674 0.91659 0.95269 0.91359 0.93326 0.93339 0.91347 0.95288 0.96355 0.96345 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.03 8.68 59.85 0.52 1.54 16 2 N -0.59 -6.87 2.95 -176.52 -0.52 -7.39 16 3 C 0.52 6.32 7.47 -11.87 -0.09 6.23 16 4 O -0.55 -8.87 16.26 5.55 0.09 -8.78 16 5 C -0.14 -1.05 6.03 -28.10 -0.17 -1.22 16 6 C -0.12 -0.67 6.03 -26.52 -0.16 -0.83 16 7 C -0.13 -0.92 5.28 -26.60 -0.14 -1.06 16 8 C 0.13 1.21 3.07 -69.54 -0.21 0.99 16 9 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 10 C 0.50 6.40 5.98 -10.99 -0.07 6.34 16 11 O -0.53 -9.08 15.05 5.55 0.08 -9.00 16 12 N -0.72 -8.83 4.96 -60.30 -0.30 -9.13 16 13 C 0.13 2.06 4.56 -4.05 -0.02 2.04 16 14 C -0.07 -1.27 0.54 -154.52 -0.08 -1.36 16 15 C -0.13 -2.02 8.05 37.16 0.30 -1.72 16 16 C -0.13 -2.05 8.05 37.15 0.30 -1.75 16 17 C 0.04 0.85 4.04 -27.89 -0.11 0.73 16 18 C -0.51 -13.12 7.65 -34.44 -0.26 -13.38 16 19 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 20 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 21 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 22 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H 0.07 0.99 7.44 -51.93 -0.39 0.61 16 27 H 0.07 0.74 7.55 -51.93 -0.39 0.35 16 28 H 0.07 0.92 7.31 -51.93 -0.38 0.54 16 29 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.36 8.13 -51.93 -0.42 -0.06 16 33 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.40 3.93 6.16 -40.82 -0.25 3.68 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.03 0.36 6.86 -51.93 -0.36 0.00 16 39 H 0.07 1.20 6.62 -51.93 -0.34 0.85 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 1.21 6.62 -51.93 -0.34 0.87 16 43 H 0.03 0.36 6.86 -51.93 -0.36 0.01 16 44 H 0.02 0.47 8.14 -51.92 -0.42 0.04 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 359.44 15.07 5.42 5.42 Total: -1.00 -32.87 359.44 -7.54 -40.42 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.73 Total: -0.06 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -0.30 Total: -2.01 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: -0.08 Total: -41.65 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.17 Total: -17.78 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.87 -7.54 -40.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908214708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.596 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds