Wall clock time and date at job start Fri Apr 10 2020 20:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 113.99885 * 2 1 4 4 C 1.52994 * 109.54614 * 294.46941 * 3 2 1 5 5 H 1.08996 * 109.47678 * 184.83350 * 4 3 2 6 6 C 1.53008 * 109.47407 * 304.83366 * 4 3 2 7 7 N 1.46903 * 109.47069 * 64.83057 * 4 3 2 8 8 C 1.46902 * 110.99925 * 131.19110 * 7 4 3 9 9 C 1.53007 * 109.47002 * 180.02562 * 8 7 4 10 10 H 1.09002 * 109.46506 * 55.00409 * 9 8 7 11 11 C 1.47200 * 109.47066 * 295.00346 * 9 8 7 12 12 N 5.97666 * 48.10934 * 302.00277 * 2 1 3 13 13 C 1.52998 * 109.46648 * 175.00046 * 9 8 7 14 14 C 1.50705 * 109.46513 * 185.00265 * 13 9 8 15 15 H 1.08001 * 120.00380 * 359.97438 * 14 13 9 16 16 C 1.37877 * 119.99654 * 180.02562 * 14 13 9 17 17 N 1.31514 * 120.00426 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99851 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47633 * 89.99339 * 18 16 14 20 20 H 1.48504 * 109.46796 * 209.99480 * 18 16 14 21 21 H 1.48503 * 109.47034 * 329.98990 * 18 16 14 22 22 C 1.53182 * 109.54226 * 174.29452 * 3 2 1 23 23 C 1.53285 * 109.06320 * 297.02742 * 22 3 2 24 24 O 1.42901 * 109.45952 * 302.44634 * 23 22 3 25 25 C 1.42906 * 114.10033 * 61.15994 * 24 23 22 26 26 C 1.53096 * 109.41012 * 298.84083 * 25 24 23 27 27 H 1.08999 * 109.47124 * 187.69479 * 1 2 3 28 28 H 1.09001 * 109.47096 * 67.69962 * 1 2 3 29 29 H 1.08998 * 109.47355 * 307.69739 * 1 2 3 30 30 H 1.09006 * 109.46740 * 300.00059 * 6 4 3 31 31 H 1.09004 * 109.46979 * 59.99504 * 6 4 3 32 32 H 1.08991 * 109.47432 * 179.97438 * 6 4 3 33 33 H 1.00905 * 111.00080 * 255.14819 * 7 4 3 34 34 H 1.08996 * 109.47116 * 300.00105 * 8 7 4 35 35 H 1.09005 * 109.46761 * 60.00240 * 8 7 4 36 36 H 1.08996 * 109.47229 * 304.99882 * 13 9 8 37 37 H 1.09000 * 109.47083 * 65.00821 * 13 9 8 38 38 H 0.96995 * 120.00242 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.52374 * 57.02037 * 22 3 2 40 40 H 1.09003 * 109.52347 * 177.20975 * 22 3 2 41 41 H 1.08999 * 109.45879 * 182.44746 * 23 22 3 42 42 H 1.08998 * 109.46459 * 62.44778 * 23 22 3 43 43 H 1.08993 * 109.48236 * 178.85585 * 25 24 23 44 44 H 1.09004 * 109.48856 * 58.82592 * 25 24 23 45 45 H 1.08996 * 109.51944 * 297.69873 * 26 25 24 46 46 H 1.08998 * 109.56978 * 177.54654 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 1.6728 2.0159 -1.3123 5 1 2.1867 2.9764 -1.3480 6 6 2.1247 1.1516 -2.4912 7 7 0.2221 2.2335 -1.3924 8 6 -0.0823 3.6230 -1.7592 9 6 -1.5991 3.8106 -1.8320 10 1 -2.0490 3.5015 -0.8884 11 6 -2.1430 2.9906 -2.9268 12 7 -2.5617 2.3579 -3.7730 13 6 -1.9188 5.2842 -2.0909 14 6 -3.4108 5.4908 -2.0405 15 1 -4.0654 4.6547 -1.8439 16 6 -3.9400 6.7472 -2.2465 17 7 -3.1429 7.7654 -2.4864 18 14 -5.7893 7.0035 -2.1833 19 1 -6.1965 7.3313 -0.7935 20 1 -6.1651 8.1213 -3.0860 21 1 -6.4763 5.7617 -2.6206 22 6 3.5308 1.1893 0.1435 23 6 3.8584 0.5476 1.4965 24 8 3.2876 1.3317 2.5460 25 6 1.8635 1.4358 2.4882 26 6 1.4556 2.1133 1.1773 27 1 -0.3633 -1.0184 0.1376 28 1 -0.3633 0.3900 -0.9508 29 1 -0.3634 0.6284 0.8131 30 1 3.2011 0.9901 -2.4317 31 1 1.6107 0.1910 -2.4554 32 1 1.8839 1.6575 -3.4260 33 1 -0.2053 1.5869 -2.0385 34 1 0.3310 4.2959 -1.0080 35 1 0.3589 3.8474 -2.7303 36 1 -1.4409 5.8991 -1.3284 37 1 -1.5455 5.5696 -3.0745 38 1 -3.5152 8.6493 -2.6310 39 1 3.9264 0.5697 -0.6613 40 1 3.9783 2.1820 0.0938 41 1 4.9399 0.5016 1.6241 42 1 3.4452 -0.4604 1.5299 43 1 1.5080 2.0295 3.3303 44 1 1.4239 0.4394 2.5346 45 1 1.8612 3.1246 1.1484 46 1 0.3685 2.1548 1.1107 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571277458.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:27:06 Heat of formation + Delta-G solvation = -68.268724 kcal Electronic energy + Delta-G solvation = -25268.879941 eV Core-core repulsion = 21772.714758 eV Total energy + Delta-G solvation = -3496.165183 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.57009 -37.95072 -36.94729 -35.30309 -33.84439 -32.83563 -31.60345 -31.30406 -29.35358 -26.85366 -26.26773 -24.97706 -23.49299 -22.92254 -21.99273 -21.16539 -19.88203 -17.09424 -16.65311 -16.51811 -16.09975 -15.99015 -15.69053 -15.48665 -14.84960 -14.72337 -14.55536 -14.12164 -13.43424 -13.25321 -13.14412 -12.88998 -12.82908 -12.67782 -12.33322 -12.28644 -12.15179 -11.86936 -11.76828 -11.64120 -11.36911 -11.29873 -11.16118 -11.03294 -10.79215 -10.63897 -10.43013 -10.34725 -10.29696 -9.70965 -9.62388 -9.44835 -9.23211 -8.49520 -8.27643 -6.13581 -4.17055 3.26307 3.33422 3.37516 3.49649 3.54645 3.73546 3.81772 4.01746 4.37836 4.61476 4.67483 4.72815 4.79009 4.91423 5.04083 5.16884 5.20748 5.24559 5.31187 5.41659 5.44803 5.49370 5.55018 5.56906 5.60120 5.67660 5.68006 5.75971 5.80835 5.89972 5.96714 6.04469 6.09070 6.15866 6.22823 6.31260 6.47957 6.98668 7.11837 7.21643 7.34001 7.38390 7.47456 7.81056 8.18285 8.33202 8.87454 9.48790 10.97240 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.021967 B = 0.003510 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.331372 B = 7976.103242 C = 8400.655591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.380 6.380 3 C 0.133 3.867 4 C 0.061 3.939 5 H 0.079 0.921 6 C -0.170 4.170 7 N -0.685 5.685 8 C 0.063 3.937 9 C 0.008 3.992 10 H 0.110 0.890 11 C 0.240 3.760 12 N -0.475 5.475 13 C 0.033 3.967 14 C -0.527 4.527 15 H 0.056 0.944 16 C 0.063 3.937 17 N -0.891 5.891 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.143 4.143 23 C 0.066 3.934 24 O -0.387 6.387 25 C 0.063 3.937 26 C -0.175 4.175 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.341 0.659 34 H 0.091 0.909 35 H 0.035 0.965 36 H 0.039 0.961 37 H 0.024 0.976 38 H 0.263 0.737 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.056 0.944 43 H 0.091 0.909 44 H 0.052 0.948 45 H 0.076 0.924 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.354 -12.857 7.728 20.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.299 6.299 3 C 0.093 3.907 4 C -0.050 4.050 5 H 0.098 0.902 6 C -0.229 4.229 7 N -0.318 5.318 8 C -0.066 4.066 9 C -0.014 4.014 10 H 0.128 0.872 11 C -0.077 4.077 12 N -0.152 5.152 13 C -0.006 4.006 14 C -0.565 4.565 15 H 0.075 0.925 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.181 4.181 23 C -0.011 4.011 24 O -0.306 6.306 25 C -0.013 4.013 26 C -0.212 4.212 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.163 0.837 34 H 0.109 0.891 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.042 0.958 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.075 0.925 43 H 0.109 0.891 44 H 0.070 0.930 45 H 0.095 0.905 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 13.857 -13.587 7.212 20.704 hybrid contribution -1.144 0.737 -0.997 1.687 sum 12.713 -12.851 6.215 19.115 Atomic orbital electron populations 1.22981 0.80661 1.00777 1.02342 1.87823 1.20374 1.26724 1.94947 1.21426 0.92304 0.83536 0.93481 1.22175 0.89150 0.98957 0.94694 0.90248 1.22301 1.02168 1.00821 0.97580 1.61199 1.09461 1.05517 1.55657 1.22231 0.94937 0.89405 1.00068 1.19324 0.92652 0.97095 0.92371 0.87239 1.29359 0.92462 0.91904 0.93979 1.81071 1.09733 1.12791 1.11655 1.19157 0.97493 0.85554 0.98383 1.21133 0.91606 0.94275 1.49529 0.92532 1.24949 0.98055 0.96069 0.94842 1.69931 1.34797 1.00150 1.48093 0.86597 0.85546 0.77931 0.78049 1.20400 1.21149 1.19886 1.22268 0.94012 1.02720 0.99070 1.22506 0.98249 0.94273 0.86096 1.87896 1.20773 1.72606 1.49296 1.22557 0.81048 1.00101 0.97637 1.22674 1.04019 1.00016 0.94525 0.91486 0.92090 0.93108 0.91847 0.91575 0.92809 0.83736 0.89069 0.94625 0.94236 0.95809 0.92763 0.90144 0.89909 0.89306 0.92522 0.89131 0.92990 0.90526 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.72 101.05 0.98 1.28 16 2 O -0.38 -4.20 8.44 -35.23 -0.30 -4.49 16 3 C 0.13 1.34 0.36 -90.44 -0.03 1.30 16 4 C 0.06 0.63 2.06 -67.71 -0.14 0.49 16 5 H 0.08 0.82 7.57 -51.93 -0.39 0.43 16 6 C -0.17 -1.70 8.61 37.16 0.32 -1.38 16 7 N -0.68 -7.97 3.36 -106.72 -0.36 -8.33 16 8 C 0.06 0.86 4.80 -3.82 -0.02 0.84 16 9 C 0.01 0.13 2.42 -93.40 -0.23 -0.10 16 10 H 0.11 1.80 8.14 -51.93 -0.42 1.38 16 11 C 0.24 4.63 12.98 -20.74 -0.27 4.37 16 12 N -0.48 -10.02 18.54 42.18 0.78 -9.24 16 13 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 14 C -0.53 -13.76 8.60 -34.44 -0.30 -14.06 16 15 H 0.06 1.47 7.59 -52.49 -0.40 1.07 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -25.21 13.29 55.43 0.74 -24.48 16 18 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.14 -1.28 4.84 -26.49 -0.13 -1.41 16 23 C 0.07 0.61 6.70 37.30 0.25 0.86 16 24 O -0.39 -4.40 10.77 -35.23 -0.38 -4.78 16 25 C 0.06 0.64 6.69 37.21 0.25 0.89 16 26 C -0.17 -1.80 4.24 -26.59 -0.11 -1.91 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.68 4.77 -51.93 -0.25 0.44 16 29 H 0.05 0.53 5.86 -51.93 -0.30 0.22 16 30 H 0.06 0.55 6.64 -51.93 -0.34 0.21 16 31 H 0.07 0.71 7.57 -51.93 -0.39 0.31 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.34 4.29 5.55 -39.29 -0.22 4.07 16 34 H 0.09 1.17 8.13 -51.93 -0.42 0.75 16 35 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.08 0.66 6.73 -51.93 -0.35 0.31 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.55 7.82 -51.93 -0.41 0.15 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.05 0.53 7.82 -51.93 -0.41 0.13 16 45 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.10 1.07 5.63 -51.93 -0.29 0.78 16 LS Contribution 358.56 15.07 5.40 5.40 Total: -1.00 -29.20 358.56 -6.31 -35.52 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -7.54 Total: 0.94 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 0.36 Total: -6.59 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 1.16 Total: -42.05 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.68 Total: -9.27 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.20 -6.31 -35.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571277458.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.750 kcal (2) G-P(sol) polarization free energy of solvation -29.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds