Wall clock time and date at job start Fri Apr 10 2020 20:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34778 * 120.00418 * 2 1 4 4 O 1.21280 * 119.99950 * 180.02562 * 3 2 1 5 5 C 1.50694 * 119.99889 * 359.97438 * 3 2 1 6 6 C 1.53000 * 109.47150 * 179.97438 * 5 3 2 7 7 H 1.08998 * 109.52548 * 305.12768 * 6 5 3 8 8 C 1.53182 * 109.52160 * 184.99977 * 6 5 3 9 9 C 1.53180 * 109.03389 * 183.11341 * 8 6 5 10 10 C 1.53096 * 109.16149 * 56.98524 * 9 8 6 11 11 O 1.42908 * 109.41523 * 302.38993 * 10 9 8 12 12 C 1.42901 * 114.09840 * 61.15600 * 11 10 9 13 13 C 1.46509 * 119.99661 * 180.02562 * 2 1 3 14 14 H 1.08996 * 110.63638 * 179.29663 * 13 2 1 15 15 C 1.55161 * 110.86881 * 302.54438 * 13 2 1 16 16 C 1.54901 * 101.57916 * 153.93750 * 15 13 2 17 17 N 1.47429 * 104.83474 * 322.99134 * 16 15 13 18 18 C 1.36940 * 125.64644 * 204.09508 * 17 16 15 19 19 H 1.07993 * 119.99693 * 169.97485 * 18 17 16 20 20 C 1.38810 * 119.99983 * 349.98035 * 18 17 16 21 21 N 1.31613 * 120.00397 * 350.42160 * 20 18 17 22 22 Si 1.86802 * 119.99666 * 170.42275 * 20 18 17 23 23 H 1.48495 * 109.47147 * 94.14119 * 22 20 18 24 24 H 1.48500 * 109.47054 * 214.13856 * 22 20 18 25 25 H 1.48501 * 109.47259 * 334.13744 * 22 20 18 26 26 C 1.47015 * 108.70197 * 24.12802 * 17 16 15 27 27 H 1.09003 * 109.46877 * 269.99894 * 1 2 3 28 28 H 1.08997 * 109.46754 * 29.99690 * 1 2 3 29 29 H 1.08997 * 109.47563 * 149.99694 * 1 2 3 30 30 H 1.09003 * 109.47441 * 300.00272 * 5 3 2 31 31 H 1.09004 * 109.47141 * 59.99818 * 5 3 2 32 32 H 1.08991 * 109.54647 * 302.98495 * 8 6 5 33 33 H 1.09002 * 109.53794 * 63.25601 * 8 6 5 34 34 H 1.09001 * 109.52082 * 176.88689 * 9 8 6 35 35 H 1.08997 * 109.52467 * 297.02044 * 9 8 6 36 36 H 1.09001 * 109.48196 * 62.37221 * 10 9 8 37 37 H 1.08999 * 109.47822 * 182.39593 * 10 9 8 38 38 H 1.08996 * 109.47960 * 178.86136 * 12 11 10 39 39 H 1.09008 * 109.47975 * 58.82320 * 12 11 10 40 40 H 1.09008 * 111.00073 * 272.00944 * 15 13 2 41 41 H 1.08995 * 111.00493 * 35.86354 * 15 13 2 42 42 H 1.09000 * 110.37034 * 204.14639 * 16 15 13 43 43 H 1.09008 * 110.36771 * 81.82839 * 16 15 13 44 44 H 0.97002 * 120.00714 * 180.02562 * 21 20 18 45 45 H 1.09004 * 109.88285 * 239.52496 * 26 17 16 46 46 H 1.08998 * 109.88215 * 118.36359 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3856 2.4723 -0.0006 6 6 2.3799 3.6351 0.0002 7 1 3.0653 3.5279 0.8409 8 6 1.6193 4.9589 0.1254 9 6 2.6176 6.1180 0.0468 10 6 3.3998 6.0193 -1.2655 11 8 4.0581 4.7526 -1.3321 12 6 3.1713 3.6323 -1.3103 13 6 2.1975 -1.2689 -0.0006 14 1 3.2729 -1.0916 -0.0130 15 6 1.7984 -2.1380 1.2212 16 6 2.0947 -3.5654 0.6975 17 7 1.7091 -3.5330 -0.7251 18 6 1.3504 -4.6181 -1.4796 19 1 0.9300 -4.4760 -2.4642 20 6 1.5272 -5.9006 -0.9789 21 7 2.2076 -6.0853 0.1325 22 14 0.7993 -7.3645 -1.8826 23 1 1.8205 -7.9419 -2.7931 24 1 0.3755 -8.3928 -0.8986 25 1 -0.3767 -6.9227 -2.6744 26 6 1.7742 -2.1431 -1.1997 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8899 -0.5138 30 1 0.7592 2.5299 -0.8908 31 1 0.7585 2.5302 0.8892 32 1 0.8978 5.0432 -0.6872 33 1 1.0982 4.9908 1.0823 34 1 2.0792 7.0652 0.0796 35 1 3.3079 6.0620 0.8884 36 1 2.7130 6.1166 -2.1063 37 1 4.1413 6.8172 -1.3076 38 1 3.7482 2.7106 -1.3846 39 1 2.4814 3.6984 -2.1517 40 1 2.4178 -1.9030 2.0869 41 1 0.7406 -2.0198 1.4559 42 1 1.4955 -4.2993 1.2364 43 1 3.1559 -3.7936 0.7978 44 1 2.3314 -6.9815 0.4822 45 1 0.7950 -1.8284 -1.5607 46 1 2.5109 -2.0584 -1.9986 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033667521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:27:03 Heat of formation + Delta-G solvation = -62.288537 kcal Electronic energy + Delta-G solvation = -24779.342448 eV Core-core repulsion = 21283.436586 eV Total energy + Delta-G solvation = -3495.905862 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.34124 -39.14528 -37.36644 -34.79574 -34.55210 -32.41581 -31.98359 -29.36024 -28.23171 -27.23594 -26.40254 -25.16859 -24.40372 -22.90306 -20.59399 -20.27808 -20.04934 -18.67179 -17.12601 -16.97343 -16.50697 -16.15104 -15.87911 -15.40733 -14.78868 -14.71231 -14.60554 -14.06253 -14.03079 -13.28472 -13.22567 -12.90162 -12.81404 -12.70472 -12.32930 -12.20454 -11.95106 -11.88906 -11.63198 -11.44329 -11.15735 -11.00459 -10.92637 -10.87257 -10.81928 -10.52468 -10.38992 -10.10016 -9.87234 -9.69381 -9.60598 -9.47425 -8.61612 -8.35613 -6.83178 -5.76813 -3.10181 2.72798 3.12200 3.38346 3.43909 3.45882 3.78532 4.38269 4.48430 4.49203 4.56652 4.69437 4.80048 4.93340 5.08260 5.19047 5.24439 5.31380 5.35690 5.36793 5.40842 5.42297 5.50495 5.55936 5.59484 5.64180 5.71652 5.75800 5.76829 5.79645 5.89648 6.10454 6.14986 6.21960 6.31561 6.51079 6.54114 6.71088 6.97081 7.10569 7.45726 7.53888 7.61352 7.75571 8.22416 8.32197 9.16374 9.78186 10.45212 11.36133 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.038697 B = 0.002842 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.398190 B = 9849.473496 C = 9951.408923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.601 5.601 3 C 0.509 3.491 4 O -0.541 6.541 5 C -0.133 4.133 6 C -0.107 4.107 7 H 0.088 0.912 8 C -0.118 4.118 9 C -0.155 4.155 10 C 0.057 3.943 11 O -0.379 6.379 12 C 0.061 3.939 13 C 0.126 3.874 14 H 0.104 0.896 15 C -0.152 4.152 16 C 0.175 3.825 17 N -0.601 5.601 18 C -0.230 4.230 19 H 0.076 0.924 20 C -0.006 4.006 21 N -0.917 5.917 22 Si 0.911 3.089 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.129 3.871 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.043 0.957 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.029 0.971 44 H 0.253 0.747 45 H 0.028 0.972 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.849 22.819 1.200 23.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.333 5.333 3 C 0.297 3.703 4 O -0.419 6.419 5 C -0.173 4.173 6 C -0.126 4.126 7 H 0.106 0.894 8 C -0.156 4.156 9 C -0.193 4.193 10 C -0.020 4.020 11 O -0.298 6.298 12 C -0.015 4.015 13 C 0.023 3.977 14 H 0.122 0.878 15 C -0.192 4.192 16 C 0.049 3.951 17 N -0.328 5.328 18 C -0.359 4.359 19 H 0.094 0.906 20 C -0.203 4.203 21 N -0.564 5.564 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.002 3.998 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.132 0.868 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.047 0.953 44 H 0.064 0.936 45 H 0.046 0.954 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.017 22.559 1.200 22.945 hybrid contribution -0.852 -0.843 -0.375 1.256 sum -4.869 21.716 0.826 22.270 Atomic orbital electron populations 1.21815 0.79848 1.03490 1.01847 1.47895 1.06962 1.06071 1.72391 1.20627 0.88139 0.85329 0.76202 1.90671 1.13904 1.87212 1.50065 1.21712 0.99071 0.92149 1.04390 1.21563 0.97100 0.93041 1.00900 0.89354 1.21663 0.97669 0.93916 1.02323 1.22179 0.98960 0.98742 0.99420 1.22573 0.96758 0.86713 0.96004 1.87994 1.33626 1.13739 1.94433 1.22885 0.93667 0.90232 0.94716 1.22218 0.97249 0.81442 0.96840 0.87785 1.23348 1.00632 0.98816 0.96399 1.21397 0.98681 0.90436 0.84557 1.44429 1.80059 1.00950 1.07344 1.19001 1.34191 0.83702 0.98973 0.90619 1.24834 0.99979 0.97331 0.98156 1.69951 1.43186 1.20810 1.22467 0.86121 0.78734 0.82450 0.78536 1.21566 1.21592 1.20612 1.21539 0.97836 0.86386 0.94070 0.92635 0.91448 0.89828 0.88902 0.88669 0.91761 0.91349 0.91008 0.90967 0.93461 0.89185 0.86791 0.93912 0.91985 0.91857 0.91022 0.95284 0.93627 0.95434 0.95694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 8.99 59.85 0.54 1.36 16 2 N -0.60 -8.81 2.89 -171.83 -0.50 -9.31 16 3 C 0.51 7.26 7.41 -10.99 -0.08 7.18 16 4 O -0.54 -9.67 13.36 5.56 0.07 -9.60 16 5 C -0.13 -1.29 3.73 -27.89 -0.10 -1.40 16 6 C -0.11 -1.10 2.03 -90.48 -0.18 -1.29 16 7 H 0.09 1.09 7.95 -51.93 -0.41 0.68 16 8 C -0.12 -0.91 5.31 -26.54 -0.14 -1.05 16 9 C -0.16 -1.18 6.14 -26.59 -0.16 -1.34 16 10 C 0.06 0.50 6.84 37.21 0.25 0.75 16 11 O -0.38 -4.81 10.77 -35.23 -0.38 -5.19 16 12 C 0.06 0.74 5.84 37.21 0.22 0.96 16 13 C 0.13 2.31 3.35 -66.09 -0.22 2.09 16 14 H 0.10 2.10 6.99 -51.93 -0.36 1.74 16 15 C -0.15 -2.87 6.65 -24.58 -0.16 -3.04 16 16 C 0.17 4.21 5.42 -2.53 -0.01 4.20 16 17 N -0.60 -15.32 3.39 -170.08 -0.58 -15.90 16 18 C -0.23 -6.40 10.24 -15.06 -0.15 -6.55 16 19 H 0.08 2.03 7.85 -52.49 -0.41 1.62 16 20 C -0.01 -0.17 5.40 -17.43 -0.09 -0.27 16 21 N -0.92 -26.88 10.68 55.49 0.59 -26.28 16 22 Si 0.91 21.91 29.56 -169.99 -5.03 16.88 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.13 2.71 6.80 -3.07 -0.02 2.69 16 27 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 28 H 0.07 0.55 6.44 -51.93 -0.33 0.22 16 29 H 0.08 1.08 6.26 -51.93 -0.33 0.75 16 30 H 0.09 0.74 7.40 -51.93 -0.38 0.35 16 31 H 0.09 0.75 8.11 -51.93 -0.42 0.33 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.11 1.68 6.03 -51.93 -0.31 1.36 16 39 H 0.04 0.45 8.14 -51.92 -0.42 0.03 16 40 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 41 H 0.06 1.12 7.21 -51.93 -0.37 0.74 16 42 H 0.07 1.90 6.94 -51.93 -0.36 1.54 16 43 H 0.03 0.77 8.07 -51.92 -0.42 0.35 16 44 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.03 0.55 6.11 -51.93 -0.32 0.23 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 351.17 15.07 5.29 5.29 Total: -1.00 -32.32 351.17 -8.65 -40.97 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -7.80 Total: -1.15 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -0.33 Total: 4.29 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.48 Total: -51.49 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.31 Total: -14.79 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.32 -8.65 -40.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033667521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.320 kcal (2) G-P(sol) polarization free energy of solvation -32.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds