Wall clock time and date at job start Fri Apr 10 2020 20:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21284 * 120.00087 * 2 1 4 4 N 1.34780 * 120.00162 * 180.02562 * 2 1 3 5 5 C 1.46919 * 120.63395 * 180.02562 * 4 2 1 6 6 C 1.53195 * 108.89273 * 126.29715 * 5 4 2 7 7 C 1.53346 * 109.14901 * 54.57640 * 6 5 4 8 8 C 1.53004 * 109.41904 * 178.67276 * 7 6 5 9 9 C 1.50701 * 109.47085 * 295.13082 * 8 7 6 10 10 O 1.21282 * 120.00096 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99786 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00098 * 179.97438 * 11 9 8 13 13 C 1.52991 * 109.47405 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47654 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47730 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99821 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00301 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99786 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00109 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47118 * 60.00096 * 19 17 15 21 21 H 1.48490 * 109.47188 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47064 * 300.00163 * 19 17 15 23 23 C 1.53034 * 109.61010 * 298.71225 * 7 6 5 24 24 C 1.46933 * 120.62602 * 359.97327 * 4 2 1 25 25 H 1.08993 * 109.47429 * 239.99985 * 1 2 3 26 26 H 1.09000 * 109.46969 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47171 * 119.99037 * 1 2 3 28 28 H 1.09002 * 109.58751 * 246.15665 * 5 4 2 29 29 H 1.08996 * 109.58750 * 6.43850 * 5 4 2 30 30 H 1.08997 * 109.49914 * 174.65962 * 6 5 4 31 31 H 1.09002 * 109.49585 * 294.75599 * 6 5 4 32 32 H 1.09001 * 109.42242 * 58.75065 * 7 6 5 33 33 H 1.09001 * 109.46592 * 55.13132 * 8 7 6 34 34 H 1.08997 * 109.47133 * 175.12697 * 8 7 6 35 35 H 0.96998 * 119.99863 * 0.02562 * 11 9 8 36 36 H 1.09001 * 109.47229 * 300.00952 * 12 11 9 37 37 H 1.09007 * 109.47155 * 60.00175 * 12 11 9 38 38 H 1.09002 * 109.47210 * 300.00071 * 13 12 11 39 39 H 1.09006 * 109.47506 * 60.00075 * 13 12 11 40 40 H 1.09001 * 109.46927 * 300.00664 * 14 13 12 41 41 H 1.09007 * 109.47209 * 59.99735 * 14 13 12 42 42 H 0.97002 * 119.99929 * 179.97438 * 18 17 15 43 43 H 1.08994 * 109.50232 * 301.42239 * 23 7 6 44 44 H 1.09007 * 109.52628 * 181.33900 * 23 7 6 45 45 H 1.08994 * 109.58580 * 353.42544 * 24 4 2 46 46 H 1.09006 * 109.57831 * 113.70037 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6500 -1.1834 0.0000 6 6 4.1361 -2.0477 1.1678 7 6 3.4893 -3.4346 1.0705 8 6 3.9962 -4.3138 2.2155 9 6 5.4759 -4.5479 2.0519 10 8 6.0668 -4.0600 1.1118 11 7 6.1426 -5.2994 2.9504 12 6 7.5809 -5.5275 2.7911 13 6 8.0879 -6.4065 3.9361 14 6 9.5901 -6.6441 3.7701 15 6 10.0894 -7.5105 4.8976 16 1 9.4037 -7.8566 5.6569 17 6 11.4213 -7.8613 4.9598 18 7 12.2561 -7.4402 4.0349 19 14 12.0402 -8.9346 6.3578 20 1 11.3270 -10.2369 6.3351 21 1 13.4982 -9.1653 6.1966 22 1 11.7875 -8.2542 7.6534 23 6 1.9679 -3.2997 1.1664 24 6 1.4602 -2.4477 -0.0005 25 1 -0.3634 -0.5138 0.8899 26 1 -0.3633 1.0277 0.0005 27 1 -0.3633 -0.5137 -0.8901 28 1 4.0112 -1.6019 -0.9394 29 1 4.0266 -0.1672 0.1160 30 1 5.2208 -2.1444 1.1220 31 1 3.8516 -1.5793 2.1101 32 1 3.7539 -3.8919 0.1171 33 1 3.8102 -3.8146 3.1665 34 1 3.4730 -5.2698 2.1986 35 1 5.6700 -5.6899 3.7020 36 1 7.7665 -6.0271 1.8403 37 1 8.1044 -4.5714 2.8073 38 1 7.9023 -5.9071 4.8871 39 1 7.5644 -7.3625 3.9195 40 1 9.7761 -7.1432 2.8191 41 1 10.1134 -5.6880 3.7870 42 1 13.1932 -7.6866 4.0789 43 1 1.7038 -2.8198 2.1087 44 1 1.5109 -4.2883 1.1210 45 1 0.3921 -2.2657 0.1175 46 1 1.6404 -2.9683 -0.9411 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180656921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:33:37 Heat of formation + Delta-G solvation = -105.819396 kcal Electronic energy + Delta-G solvation = -23419.059468 eV Core-core repulsion = 19921.265966 eV Total energy + Delta-G solvation = -3497.793502 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 3.75 seconds Orbital eigenvalues (eV) -40.58008 -39.60322 -37.65455 -35.48352 -34.09295 -33.34012 -31.90130 -31.31372 -30.12023 -28.73579 -26.61300 -24.35665 -23.50304 -22.81451 -21.04343 -20.72794 -19.78891 -19.28937 -17.36367 -16.87352 -16.42510 -16.16036 -15.89717 -15.58884 -15.42986 -14.75799 -14.48283 -14.30006 -14.16620 -13.84082 -13.68865 -13.48626 -13.21149 -12.85265 -12.52220 -12.35315 -12.25247 -12.11512 -11.86589 -11.67848 -11.49328 -11.25614 -10.97373 -10.88637 -10.75178 -10.66960 -10.63077 -10.10677 -9.89113 -9.80095 -9.36782 -9.14791 -8.94793 -8.78216 -8.39024 -6.03637 -4.07029 2.32929 2.70345 2.76251 3.30373 3.34652 3.35721 3.38884 4.20411 4.34131 4.41366 4.43103 4.54859 4.70439 4.79098 4.87205 4.94748 5.01238 5.09538 5.20271 5.26148 5.26700 5.31936 5.34938 5.46171 5.53775 5.60327 5.67896 5.73083 5.75004 5.83003 5.95939 6.13321 6.14957 6.31975 6.48815 6.56844 6.80679 6.97864 7.09855 7.60781 7.69137 7.73443 7.87295 7.94701 8.34692 8.39225 8.99369 9.57156 11.07551 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.046890 B = 0.002005 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.993259 B =13960.693981 C =14236.391501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.510 3.490 3 O -0.549 6.549 4 N -0.613 5.613 5 C 0.111 3.889 6 C -0.134 4.134 7 C -0.071 4.071 8 C -0.138 4.138 9 C 0.506 3.494 10 O -0.542 6.542 11 N -0.728 5.728 12 C 0.116 3.884 13 C -0.121 4.121 14 C 0.024 3.976 15 C -0.524 4.524 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.132 4.132 24 C 0.107 3.893 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.398 0.602 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.262 0.738 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.244 8.589 -6.641 29.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.299 3.701 3 O -0.427 6.427 4 N -0.347 5.347 5 C -0.011 4.011 6 C -0.172 4.172 7 C -0.090 4.090 8 C -0.178 4.178 9 C 0.292 3.708 10 O -0.420 6.420 11 N -0.378 5.378 12 C -0.007 4.007 13 C -0.159 4.159 14 C -0.014 4.014 15 C -0.562 4.562 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.722 3.278 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.170 4.170 24 C -0.016 4.016 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.117 0.883 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.231 0.769 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.104 0.896 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -26.285 9.498 -7.381 28.906 hybrid contribution 0.228 -1.035 1.223 1.619 sum -26.056 8.462 -6.158 28.079 Atomic orbital electron populations 1.21939 0.91972 1.05370 1.04016 1.20822 0.90614 0.83112 0.75599 1.90720 1.70796 1.31098 1.50106 1.48229 1.07370 1.05893 1.73245 1.21624 0.78588 1.01948 0.98898 1.22159 1.02953 0.94124 0.97919 1.20935 0.93611 0.95622 0.98839 1.21744 0.93142 1.01877 1.01021 1.20633 0.89457 0.78369 0.82373 1.90666 1.70066 1.49706 1.31570 1.46267 1.10973 1.52282 1.28310 1.21630 0.78333 1.00354 1.00356 1.21884 1.00818 0.97529 0.95647 1.19026 0.87760 0.97169 0.97433 1.21163 0.93755 1.31425 1.09873 0.92711 1.25036 0.97033 0.96262 0.96153 1.69955 1.03992 1.45389 1.33886 0.86632 0.77710 0.80915 0.82573 1.20253 1.21252 1.20249 1.21994 0.95969 1.00239 0.98780 1.21754 0.96583 0.84072 0.99156 0.89418 0.89097 0.89456 0.91321 0.89116 0.88348 0.92196 0.89981 0.89064 0.88911 0.76876 0.91844 0.91832 0.92775 0.92774 0.96298 0.96293 0.92848 0.91288 0.90362 0.89568 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 8.67 36.00 0.31 -0.60 16 2 C 0.51 5.04 7.81 -10.98 -0.09 4.95 16 3 O -0.55 -7.99 16.50 5.55 0.09 -7.89 16 4 N -0.61 -5.28 2.97 -172.79 -0.51 -5.80 16 5 C 0.11 1.14 6.42 -3.71 -0.02 1.11 16 6 C -0.13 -1.35 5.13 -26.45 -0.14 -1.49 16 7 C -0.07 -0.59 1.80 -90.42 -0.16 -0.75 16 8 C -0.14 -1.14 5.18 -27.88 -0.14 -1.28 16 9 C 0.51 6.57 7.54 -10.98 -0.08 6.49 16 10 O -0.54 -9.09 13.97 5.56 0.08 -9.01 16 11 N -0.73 -9.62 5.56 -60.30 -0.33 -9.95 16 12 C 0.12 1.98 5.67 -4.05 -0.02 1.96 16 13 C -0.12 -2.31 5.27 -26.74 -0.14 -2.45 16 14 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 15 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 16 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 19 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C -0.13 -0.71 5.36 -26.64 -0.14 -0.86 16 24 C 0.11 0.57 6.34 -3.73 -0.02 0.55 16 25 H 0.09 0.30 7.69 -51.93 -0.40 -0.10 16 26 H 0.09 0.50 8.12 -51.93 -0.42 0.08 16 27 H 0.09 0.29 7.94 -51.93 -0.41 -0.12 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.09 1.08 7.00 -51.93 -0.36 0.72 16 30 H 0.10 1.25 5.94 -51.93 -0.31 0.95 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.79 7.96 -51.93 -0.41 0.38 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.40 4.13 8.47 -40.82 -0.35 3.78 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.30 8.14 -51.92 -0.42 -0.12 16 45 H 0.09 0.26 5.93 -51.93 -0.31 -0.05 16 46 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 368.82 15.07 5.56 5.56 Total: -1.00 -34.82 368.82 -8.62 -43.44 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -8.01 Total: -1.47 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -1.20 Total: -5.25 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: -0.11 Total: -41.73 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: 0.17 Total: -16.91 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.82 -8.62 -43.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180656921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.377 kcal (2) G-P(sol) polarization free energy of solvation -34.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.75 seconds