Wall clock time and date at job start Fri Apr 10 2020 20:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47164 * 239.99836 * 2 1 3 5 5 C 1.52999 * 109.46626 * 119.99539 * 2 1 3 6 6 C 1.53002 * 109.47302 * 60.00257 * 5 2 1 7 7 C 1.52993 * 109.47392 * 179.97438 * 6 5 2 8 8 C 1.52997 * 109.47024 * 60.00071 * 7 6 5 9 9 C 1.53006 * 109.47164 * 60.00057 * 8 7 6 10 10 N 1.46497 * 109.47007 * 175.00315 * 9 8 7 11 11 C 1.34778 * 119.99881 * 180.02562 * 10 9 8 12 12 O 1.21592 * 119.99795 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00355 * 179.97438 * 11 10 9 14 14 C 1.46504 * 120.00300 * 179.97438 * 13 11 10 15 15 C 1.50694 * 109.47050 * 180.02562 * 14 13 11 16 16 H 1.08003 * 120.00587 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99884 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99924 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99912 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47406 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47187 * 119.99945 * 19 17 15 22 22 H 1.48506 * 109.47030 * 239.99424 * 19 17 15 23 23 C 1.52997 * 109.47232 * 299.99958 * 8 7 6 24 24 C 1.52997 * 109.47592 * 300.00035 * 5 2 1 25 25 H 1.09004 * 109.47297 * 300.00280 * 1 2 3 26 26 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 27 27 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47289 * 299.99953 * 3 2 1 30 30 H 1.09004 * 109.47261 * 59.99697 * 3 2 1 31 31 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 32 32 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 33 33 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 34 34 H 1.09002 * 109.46719 * 180.02562 * 5 2 1 35 35 H 1.09004 * 109.47006 * 59.99583 * 6 5 2 36 36 H 1.09002 * 109.46838 * 300.00086 * 6 5 2 37 37 H 1.09002 * 109.47722 * 300.00185 * 7 6 5 38 38 H 1.09000 * 109.47250 * 180.02562 * 7 6 5 39 39 H 1.09001 * 109.47375 * 180.02562 * 8 7 6 40 40 H 1.09007 * 109.46744 * 294.99886 * 9 8 7 41 41 H 1.08995 * 109.46794 * 55.00131 * 9 8 7 42 42 H 0.96993 * 120.00553 * 359.97438 * 10 9 8 43 43 H 0.97006 * 119.99942 * 359.97438 * 13 11 10 44 44 H 1.08999 * 109.46912 * 299.99430 * 14 13 11 45 45 H 1.08996 * 109.47381 * 59.99859 * 14 13 11 46 46 H 0.96997 * 119.99864 * 180.02562 * 18 17 15 47 47 H 1.09004 * 109.47261 * 179.97438 * 23 8 7 48 48 H 1.09002 * 109.47153 * 299.99992 * 23 8 7 49 49 H 1.09000 * 109.47140 * 300.00346 * 24 5 2 50 50 H 1.09002 * 109.47045 * 60.00253 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 6 1.5299 -2.1637 1.2494 7 6 2.0403 -2.8850 2.4984 8 6 1.5307 -2.1639 3.7478 9 6 0.0006 -2.1639 3.7483 10 7 -0.4873 -1.5802 5.0002 11 6 -1.8123 -1.4766 5.2241 12 8 -2.6027 -1.8672 4.3867 13 7 -2.2612 -0.9401 6.3760 14 6 -3.7015 -0.8270 6.6191 15 6 -3.9353 -0.1979 7.9683 16 1 -3.0952 0.0886 8.5836 17 6 -5.2219 0.0109 8.4179 18 7 -6.2450 -0.3384 7.6691 19 14 -5.5118 0.7901 10.0908 20 1 -4.2056 1.0882 10.7310 21 1 -6.2806 2.0495 9.9237 22 1 -6.2798 -0.1487 10.9477 23 6 2.0407 -0.7214 3.7478 24 6 1.5299 0.0001 2.4985 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1301 -0.7216 -1.2489 34 1 3.1300 -0.7208 1.2496 35 1 1.8933 -2.6776 0.3594 36 1 0.4399 -2.1636 1.2493 37 1 3.1303 -2.8851 2.4981 38 1 1.6773 -3.9128 2.4982 39 1 1.8947 -2.6775 4.6377 40 1 -0.3629 -1.5743 2.9066 41 1 -0.3626 -3.1876 3.6588 42 1 0.1432 -1.2690 5.6684 43 1 -1.6307 -0.6289 7.0443 44 1 -4.1527 -0.2054 5.8458 45 1 -4.1527 -1.8190 6.5972 46 1 -7.1501 -0.1911 7.9852 47 1 1.6772 -0.2075 4.6377 48 1 3.1307 -0.7214 3.7475 49 1 1.8933 1.0278 2.4985 50 1 0.4399 0.0001 2.4985 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426440708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:27:38 Heat of formation + Delta-G solvation = -75.793825 kcal Electronic energy + Delta-G solvation = -25039.762468 eV Core-core repulsion = 21679.104067 eV Total energy + Delta-G solvation = -3360.658401 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 296.221 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.38166 -38.92850 -36.68527 -34.13881 -33.50640 -32.20482 -31.10309 -29.95295 -27.53307 -27.44570 -27.23722 -25.36029 -22.81396 -22.63772 -22.25435 -20.05920 -19.18724 -18.41283 -17.83780 -16.24469 -16.00395 -15.60565 -15.27185 -14.72951 -14.59958 -14.30399 -14.26082 -14.10943 -13.75299 -13.51121 -13.14831 -12.96849 -12.77010 -12.53719 -12.38862 -11.99384 -11.93510 -11.89691 -11.78721 -11.73298 -11.32744 -11.26064 -11.05666 -10.90880 -10.87569 -10.79165 -10.73301 -10.27323 -10.15139 -9.96790 -9.94611 -9.33234 -9.31134 -8.71170 -8.56887 -7.68405 -6.12343 -4.18491 3.25838 3.32237 3.35396 3.51204 4.04766 4.35547 4.39454 4.47348 4.55130 4.72505 4.82612 4.87160 5.07146 5.19411 5.21864 5.23748 5.26951 5.31034 5.34658 5.42017 5.48398 5.51320 5.51845 5.62261 5.64681 5.71380 5.78117 5.82240 5.86079 5.88529 5.92703 5.94401 6.05811 6.09481 6.14636 6.17276 6.23443 6.30295 6.35765 6.50211 6.99099 7.19413 7.57858 7.61324 7.62163 7.96638 8.10034 8.81468 9.01845 9.39717 9.54311 10.98029 Molecular weight = 296.22amu Principal moments of inertia in cm(-1) A = 0.023789 B = 0.002836 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.743998 B = 9872.243524 C =10185.274917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.065 4.065 3 C -0.143 4.143 4 C -0.142 4.142 5 C -0.072 4.072 6 C -0.124 4.124 7 C -0.109 4.109 8 C -0.099 4.099 9 C 0.143 3.857 10 N -0.756 5.756 11 C 0.692 3.308 12 O -0.603 6.603 13 N -0.731 5.731 14 C 0.267 3.733 15 C -0.540 4.540 16 H 0.062 0.938 17 C 0.062 3.938 18 N -0.886 5.886 19 Si 0.903 3.097 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.113 4.113 24 C -0.123 4.123 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.389 0.611 43 H 0.385 0.615 44 H 0.024 0.976 45 H 0.024 0.976 46 H 0.265 0.735 47 H 0.062 0.938 48 H 0.060 0.940 49 H 0.062 0.938 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.624 -0.656 -13.651 25.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.065 4.065 3 C -0.200 4.200 4 C -0.200 4.200 5 C -0.090 4.090 6 C -0.161 4.161 7 C -0.147 4.147 8 C -0.118 4.118 9 C 0.019 3.981 10 N -0.414 5.414 11 C 0.391 3.609 12 O -0.482 6.482 13 N -0.383 5.383 14 C 0.146 3.854 15 C -0.578 4.578 16 H 0.081 0.919 17 C -0.141 4.141 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.150 4.150 24 C -0.160 4.160 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.222 0.778 43 H 0.217 0.783 44 H 0.042 0.958 45 H 0.042 0.958 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 20.621 -1.018 -14.431 25.190 hybrid contribution 0.316 0.705 1.544 1.727 sum 20.938 -0.312 -12.887 24.588 Atomic orbital electron populations 1.22004 0.94410 1.02220 1.01847 1.20545 0.95867 0.95195 0.94893 1.21927 1.00570 0.95734 1.01807 1.21923 1.00585 1.00491 0.96964 1.21135 0.99587 0.94533 0.93741 1.21782 1.01757 0.95122 0.97420 1.21476 1.00383 0.98883 0.93930 1.21372 0.94914 0.96695 0.98829 1.21221 0.92078 0.98366 0.86474 1.45178 1.05805 1.69092 1.21299 1.16170 0.81848 0.79471 0.83384 1.90865 1.54819 1.56038 1.46477 1.45707 1.10998 1.64388 1.17235 1.18956 0.73236 0.97197 0.96030 1.21273 0.92620 1.41801 1.02136 0.91948 1.24952 0.95783 0.95501 0.97863 1.69993 0.98706 1.46529 1.37091 0.86368 0.78298 0.78927 0.83329 1.19687 1.20829 1.20838 1.21549 1.00099 0.95000 0.98365 1.21775 1.01917 0.98683 0.93611 0.92116 0.93068 0.92210 0.92990 0.92972 0.92248 0.92325 0.92983 0.92992 0.91610 0.91867 0.90962 0.91840 0.91777 0.90831 0.91358 0.92463 0.77781 0.78281 0.95825 0.95827 0.92558 0.91884 0.92134 0.91951 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 7.77 37.16 0.29 -1.15 16 2 C -0.06 -0.54 0.57 -154.51 -0.09 -0.63 16 3 C -0.14 -1.14 8.12 37.16 0.30 -0.84 16 4 C -0.14 -1.06 8.12 37.16 0.30 -0.76 16 5 C -0.07 -0.59 1.55 -90.62 -0.14 -0.73 16 6 C -0.12 -1.06 4.22 -26.73 -0.11 -1.17 16 7 C -0.11 -0.90 5.45 -26.74 -0.15 -1.05 16 8 C -0.10 -0.94 2.70 -90.62 -0.24 -1.18 16 9 C 0.14 1.90 4.36 -4.04 -0.02 1.88 16 10 N -0.76 -11.51 5.29 -65.22 -0.34 -11.85 16 11 C 0.69 14.65 8.57 -86.92 -0.74 13.91 16 12 O -0.60 -15.47 16.34 5.28 0.09 -15.39 16 13 N -0.73 -16.03 5.55 -66.42 -0.37 -16.40 16 14 C 0.27 7.30 5.43 -5.19 -0.03 7.27 16 15 C -0.54 -14.91 9.28 -34.44 -0.32 -15.23 16 16 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 19 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 23 C -0.11 -1.00 5.33 -26.71 -0.14 -1.14 16 24 C -0.12 -1.15 4.23 -26.71 -0.11 -1.27 16 25 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.50 6.43 -51.93 -0.33 0.16 16 31 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 36 H 0.07 0.73 4.83 -51.93 -0.25 0.48 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.98 4.83 -51.93 -0.25 0.73 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.39 4.80 7.67 -40.82 -0.31 4.48 16 43 H 0.39 7.23 8.34 -40.82 -0.34 6.89 16 44 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.06 0.59 7.18 -51.93 -0.37 0.21 16 48 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.06 0.57 6.43 -51.93 -0.33 0.23 16 50 H 0.07 0.85 4.61 -51.93 -0.24 0.61 16 LS Contribution 370.25 15.07 5.58 5.58 Total: -1.00 -32.41 370.25 -9.43 -41.84 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -8.80 Total: 6.32 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -1.30 Total: -0.43 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.02 Total: -54.00 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.09 Total: -15.39 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.41 -9.43 -41.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426440708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.954 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds