Wall clock time and date at job start Fri Apr 10 2020 20:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47164 * 239.99836 * 2 1 3 5 5 C 1.52999 * 109.46626 * 119.99539 * 2 1 3 6 6 C 1.53002 * 109.47302 * 60.00257 * 5 2 1 7 7 C 1.52993 * 109.47392 * 179.97438 * 6 5 2 8 8 C 1.52997 * 109.47024 * 60.00071 * 7 6 5 9 9 C 1.53006 * 109.47164 * 60.00057 * 8 7 6 10 10 N 1.46497 * 109.47007 * 175.00315 * 9 8 7 11 11 C 1.34778 * 119.99881 * 180.02562 * 10 9 8 12 12 O 1.21592 * 119.99795 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00355 * 179.97438 * 11 10 9 14 14 C 1.46504 * 120.00300 * 179.97438 * 13 11 10 15 15 C 1.50694 * 109.47050 * 180.02562 * 14 13 11 16 16 H 1.08003 * 120.00587 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99884 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99924 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99912 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47406 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47187 * 119.99945 * 19 17 15 22 22 H 1.48506 * 109.47030 * 239.99424 * 19 17 15 23 23 C 1.52997 * 109.47232 * 299.99958 * 8 7 6 24 24 C 1.52997 * 109.47592 * 300.00035 * 5 2 1 25 25 H 1.09004 * 109.47297 * 300.00280 * 1 2 3 26 26 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 27 27 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47289 * 299.99953 * 3 2 1 30 30 H 1.09004 * 109.47261 * 59.99697 * 3 2 1 31 31 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 32 32 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 33 33 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 34 34 H 1.09002 * 109.46719 * 180.02562 * 5 2 1 35 35 H 1.09004 * 109.47006 * 59.99583 * 6 5 2 36 36 H 1.09002 * 109.46838 * 300.00086 * 6 5 2 37 37 H 1.09002 * 109.47722 * 300.00185 * 7 6 5 38 38 H 1.09000 * 109.47250 * 180.02562 * 7 6 5 39 39 H 1.09001 * 109.47375 * 180.02562 * 8 7 6 40 40 H 1.09007 * 109.46744 * 294.99886 * 9 8 7 41 41 H 1.08995 * 109.46794 * 55.00131 * 9 8 7 42 42 H 0.96993 * 120.00553 * 359.97438 * 10 9 8 43 43 H 0.97006 * 119.99942 * 359.97438 * 13 11 10 44 44 H 1.08999 * 109.46912 * 299.99430 * 14 13 11 45 45 H 1.08996 * 109.47381 * 59.99859 * 14 13 11 46 46 H 0.96997 * 119.99864 * 180.02562 * 18 17 15 47 47 H 1.09004 * 109.47261 * 179.97438 * 23 8 7 48 48 H 1.09002 * 109.47153 * 299.99992 * 23 8 7 49 49 H 1.09000 * 109.47140 * 300.00346 * 24 5 2 50 50 H 1.09002 * 109.47045 * 60.00253 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 6 1.5299 -2.1637 1.2494 7 6 2.0403 -2.8850 2.4984 8 6 1.5307 -2.1639 3.7478 9 6 0.0006 -2.1639 3.7483 10 7 -0.4873 -1.5802 5.0002 11 6 -1.8123 -1.4766 5.2241 12 8 -2.6027 -1.8672 4.3867 13 7 -2.2612 -0.9401 6.3760 14 6 -3.7015 -0.8270 6.6191 15 6 -3.9353 -0.1979 7.9683 16 1 -3.0952 0.0886 8.5836 17 6 -5.2219 0.0109 8.4179 18 7 -6.2450 -0.3384 7.6691 19 14 -5.5118 0.7901 10.0908 20 1 -4.2056 1.0882 10.7310 21 1 -6.2806 2.0495 9.9237 22 1 -6.2798 -0.1487 10.9477 23 6 2.0407 -0.7214 3.7478 24 6 1.5299 0.0001 2.4985 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1301 -0.7216 -1.2489 34 1 3.1300 -0.7208 1.2496 35 1 1.8933 -2.6776 0.3594 36 1 0.4399 -2.1636 1.2493 37 1 3.1303 -2.8851 2.4981 38 1 1.6773 -3.9128 2.4982 39 1 1.8947 -2.6775 4.6377 40 1 -0.3629 -1.5743 2.9066 41 1 -0.3626 -3.1876 3.6588 42 1 0.1432 -1.2690 5.6684 43 1 -1.6307 -0.6289 7.0443 44 1 -4.1527 -0.2054 5.8458 45 1 -4.1527 -1.8190 6.5972 46 1 -7.1501 -0.1911 7.9852 47 1 1.6772 -0.2075 4.6377 48 1 3.1307 -0.7214 3.7475 49 1 1.8933 1.0278 2.4985 50 1 0.4399 0.0001 2.4985 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426440708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:27:37 Heat of formation + Delta-G solvation = -96.614822 kcal Electronic energy + Delta-G solvation = -25040.665334 eV Core-core repulsion = 21679.104067 eV Total energy + Delta-G solvation = -3361.561267 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 296.221 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.33448 -40.44173 -37.61427 -36.11317 -34.94233 -34.21271 -31.81442 -30.91844 -29.21320 -28.22895 -28.06365 -26.64981 -24.48477 -23.51213 -23.23262 -21.80474 -20.18487 -19.57731 -19.05781 -17.95673 -17.31587 -17.02975 -16.51577 -16.36765 -15.68953 -15.48987 -15.32686 -14.95234 -14.92363 -14.61053 -14.34761 -14.11021 -14.06379 -13.94610 -13.53996 -13.22411 -13.12074 -12.86749 -12.76128 -12.73962 -12.58161 -12.45639 -12.21348 -12.17890 -11.93722 -11.79284 -11.57294 -11.49867 -11.44075 -11.20958 -10.93963 -10.81269 -10.66637 -10.64438 -10.19781 -9.53434 -8.28133 -6.44541 1.43471 1.45192 1.58455 1.95226 2.27780 2.40242 3.06833 3.58327 3.65887 3.77159 3.83769 3.97205 4.07466 4.14579 4.30500 4.49280 4.49742 4.57886 4.61510 4.70058 4.71093 4.80836 4.81533 4.83676 4.91072 4.97082 4.98532 5.08752 5.11539 5.11756 5.18797 5.19978 5.25775 5.27431 5.33293 5.35217 5.36198 5.43405 5.47626 5.50178 5.58251 5.61804 5.67185 5.71135 5.75449 5.86064 6.30030 6.67743 7.25024 7.34737 7.75794 8.84622 Molecular weight = 296.22amu Principal moments of inertia in cm(-1) A = 0.023789 B = 0.002836 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.743998 B = 9872.243524 C =10185.274917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.064 4.064 3 C -0.141 4.141 4 C -0.140 4.140 5 C -0.065 4.065 6 C -0.123 4.123 7 C -0.106 4.106 8 C -0.088 4.088 9 C 0.142 3.858 10 N -0.729 5.729 11 C 0.689 3.311 12 O -0.652 6.652 13 N -0.724 5.724 14 C 0.286 3.714 15 C -0.553 4.553 16 H 0.084 0.916 17 C 0.002 3.998 18 N -0.932 5.932 19 Si 0.987 3.013 20 H -0.253 1.253 21 H -0.279 1.279 22 H -0.279 1.279 23 C -0.110 4.110 24 C -0.122 4.122 25 H 0.041 0.959 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.048 0.952 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.055 0.945 41 H 0.042 0.958 42 H 0.408 0.592 43 H 0.404 0.596 44 H -0.017 1.017 45 H -0.016 1.016 46 H 0.269 0.731 47 H 0.059 0.941 48 H 0.083 0.917 49 H 0.066 0.934 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.797 -0.121 -12.445 27.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.064 4.064 3 C -0.199 4.199 4 C -0.197 4.197 5 C -0.084 4.084 6 C -0.161 4.161 7 C -0.143 4.143 8 C -0.107 4.107 9 C 0.018 3.982 10 N -0.386 5.386 11 C 0.388 3.612 12 O -0.535 6.535 13 N -0.378 5.378 14 C 0.162 3.838 15 C -0.591 4.591 16 H 0.102 0.898 17 C -0.197 4.197 18 N -0.570 5.570 19 Si 0.810 3.190 20 H -0.176 1.176 21 H -0.204 1.204 22 H -0.204 1.204 23 C -0.148 4.148 24 C -0.159 4.159 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.245 0.755 43 H 0.239 0.761 44 H 0.001 0.999 45 H 0.002 0.998 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.102 0.898 49 H 0.084 0.916 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 23.894 -0.478 -13.215 27.309 hybrid contribution -0.671 0.513 1.066 1.360 sum 23.222 0.034 -12.148 26.208 Atomic orbital electron populations 1.21991 0.96063 1.01363 1.00965 1.20543 0.94430 0.95798 0.95617 1.21907 1.01270 0.95222 1.01457 1.21894 1.01262 1.00226 0.96302 1.21097 1.00232 0.94021 0.93017 1.21766 1.00362 0.95633 0.98292 1.21485 1.01595 0.98508 0.92761 1.21342 0.91349 0.97729 1.00285 1.21397 0.95100 0.96910 0.84814 1.44952 1.03699 1.67606 1.22368 1.16372 0.83395 0.78944 0.82470 1.90832 1.56777 1.57955 1.47943 1.45291 1.09328 1.64905 1.18263 1.18388 0.75781 0.94152 0.95435 1.21627 0.93635 1.41726 1.02084 0.89814 1.26089 0.95345 0.95767 1.02514 1.70156 0.99446 1.47789 1.39630 0.85080 0.78909 0.77616 0.77396 1.17595 1.20435 1.20429 1.21562 1.01391 0.94103 0.97736 1.21742 1.00132 0.99324 0.94742 0.93973 0.92915 0.93091 0.91760 0.92953 0.93046 0.92422 0.92967 0.91799 0.90061 0.90757 0.93301 0.89584 0.91805 0.89345 0.92729 0.93937 0.75519 0.76069 0.99860 0.99819 0.92249 0.92249 0.89846 0.91583 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 7.77 71.98 0.56 -2.42 16 2 C -0.06 -1.00 0.57 -52.18 -0.03 -1.03 16 3 C -0.14 -2.07 8.12 71.98 0.58 -1.49 16 4 C -0.14 -1.86 8.12 71.98 0.58 -1.27 16 5 C -0.07 -0.98 1.55 -10.79 -0.02 -0.99 16 6 C -0.12 -1.96 4.22 30.59 0.13 -1.83 16 7 C -0.11 -1.50 5.45 30.59 0.17 -1.33 16 8 C -0.09 -1.48 2.70 -10.79 -0.03 -1.51 16 9 C 0.14 3.76 4.36 86.38 0.38 4.13 16 10 N -0.73 -21.98 5.29 -478.52 -2.53 -24.51 16 11 C 0.69 30.00 8.57 179.06 1.53 31.53 16 12 O -0.65 -35.27 16.34 -4.01 -0.07 -35.33 16 13 N -0.72 -32.35 5.55 -482.31 -2.68 -35.02 16 14 C 0.29 16.32 5.43 85.63 0.46 16.78 16 15 C -0.55 -30.70 9.28 25.60 0.24 -30.46 16 16 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 17 C 0.00 0.13 5.46 84.66 0.46 0.59 16 18 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 19 Si 0.99 42.83 29.54 68.60 2.03 44.86 16 20 H -0.25 -10.08 7.11 99.48 0.71 -9.38 16 21 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 23 C -0.11 -1.69 5.33 30.61 0.16 -1.53 16 24 C -0.12 -2.17 4.23 30.61 0.13 -2.04 16 25 H 0.04 0.99 6.43 -2.38 -0.02 0.98 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.05 1.10 6.43 -2.39 -0.02 1.08 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.83 6.43 -2.38 -0.02 0.81 16 31 H 0.06 0.77 6.43 -2.39 -0.02 0.76 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 35 H 0.07 1.02 6.43 -2.38 -0.02 1.01 16 36 H 0.05 1.02 4.83 -2.39 -0.01 1.00 16 37 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.05 1.65 4.83 -2.38 -0.01 1.63 16 41 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.41 9.36 7.67 -92.71 -0.71 8.65 16 43 H 0.40 14.82 8.34 -92.70 -0.77 14.05 16 44 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 45 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 46 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 47 H 0.06 0.96 7.18 -2.38 -0.02 0.94 16 48 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.07 1.12 6.43 -2.39 -0.02 1.10 16 50 H 0.04 1.07 4.61 -2.39 -0.01 1.06 16 Total: -1.00 -73.47 370.25 1.80 -71.67 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: -0.55 Total: 28.11 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 5.32 Total: 7.12 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -4.92 Total: -116.42 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.07 Total: -35.33 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -73.47 1.80 -71.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426440708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.943 kcal (2) G-P(sol) polarization free energy of solvation -73.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds