Wall clock time and date at job start Fri Apr 10 2020 20:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47604 * 2 1 4 4 C 1.52998 * 109.47336 * 239.99810 * 2 1 3 5 5 O 1.45196 * 109.47070 * 65.00054 * 4 2 1 6 6 C 1.34234 * 116.99938 * 180.02562 * 5 4 2 7 7 O 1.20826 * 119.99712 * 359.72483 * 6 5 4 8 8 C 1.50700 * 120.00068 * 180.02562 * 6 5 4 9 9 C 1.52994 * 109.46890 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.46910 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.47351 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47004 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00315 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99724 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00031 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00013 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47273 * 60.00180 * 16 14 12 18 18 H 1.48495 * 109.47159 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47290 * 300.00377 * 16 14 12 20 20 C 1.52999 * 109.47000 * 119.99821 * 2 1 3 21 21 C 1.53008 * 109.47121 * 300.00161 * 20 2 1 22 22 C 1.52999 * 109.47121 * 179.97438 * 21 20 2 23 23 C 1.52997 * 109.47373 * 59.99473 * 22 21 20 24 24 C 1.52998 * 109.47449 * 300.00286 * 23 22 21 25 25 C 1.52994 * 109.47594 * 179.97438 * 20 2 1 26 26 H 1.09007 * 109.46771 * 60.00101 * 1 2 3 27 27 H 1.09000 * 109.47245 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47311 * 300.00568 * 1 2 3 29 29 H 1.09012 * 109.46921 * 305.00044 * 4 2 1 30 30 H 1.08996 * 109.47090 * 185.00422 * 4 2 1 31 31 H 1.08992 * 109.47012 * 300.00044 * 8 6 5 32 32 H 1.08999 * 109.46550 * 59.99877 * 8 6 5 33 33 H 1.09000 * 109.47301 * 299.99645 * 9 8 6 34 34 H 1.08999 * 109.47498 * 60.00613 * 9 8 6 35 35 H 1.08997 * 109.47464 * 300.00500 * 10 9 8 36 36 H 1.09002 * 109.47168 * 60.00243 * 10 9 8 37 37 H 1.09005 * 109.47089 * 300.00351 * 11 10 9 38 38 H 1.09002 * 109.46787 * 60.00009 * 11 10 9 39 39 H 0.97001 * 120.00302 * 179.97438 * 15 14 12 40 40 H 1.09000 * 109.47181 * 59.99887 * 20 2 1 41 41 H 1.08995 * 109.46896 * 299.99462 * 21 20 2 42 42 H 1.08996 * 109.46987 * 59.99711 * 21 20 2 43 43 H 1.09000 * 109.47181 * 299.99727 * 22 21 20 44 44 H 1.08995 * 109.47289 * 179.97438 * 22 21 20 45 45 H 1.08999 * 109.47516 * 179.97438 * 23 22 21 46 46 H 1.09000 * 109.46760 * 59.99996 * 23 22 21 47 47 H 1.09000 * 109.46903 * 299.99622 * 24 23 22 48 48 H 1.08999 * 109.47508 * 179.97438 * 24 23 22 49 49 H 1.09005 * 109.46814 * 300.00397 * 25 20 2 50 50 H 1.09000 * 109.46895 * 59.99778 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 1.6560 0.0286 -2.4317 6 6 2.0291 -0.4734 -3.6195 7 8 2.6601 -1.5026 -3.6690 8 6 1.6667 0.2502 -4.8907 9 6 2.2079 -0.5274 -6.0921 10 6 1.8394 0.2070 -7.3828 11 6 2.3800 -0.5709 -8.5843 12 6 2.0176 0.1527 -9.8555 13 1 1.4581 1.0754 -9.8110 14 6 2.4013 -0.3626 -11.0755 15 7 3.0831 -1.4859 -11.1297 16 14 1.9528 0.5347 -12.6512 17 1 2.5485 1.8948 -12.6330 18 1 2.4774 -0.2204 -13.8173 19 1 0.4754 0.6427 -12.7560 20 6 2.0400 -0.7212 1.2493 21 6 1.5299 0.0001 2.4985 22 6 2.0393 -0.7215 3.7478 23 6 3.5693 -0.7222 3.7482 24 6 4.0794 -1.4434 2.4990 25 6 3.5699 -0.7218 1.2491 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6054 -1.7199 -1.2951 30 1 3.1263 -0.7995 -1.2055 31 1 0.5824 0.3294 -4.9672 32 1 2.1039 1.2486 -4.8776 33 1 3.2923 -0.6062 -6.0153 34 1 1.7710 -1.5259 -6.1053 35 1 0.7550 0.2855 -7.4594 36 1 2.2759 1.2057 -7.3699 37 1 3.4645 -0.6498 -8.5080 38 1 1.9431 -1.5695 -8.5970 39 1 3.3528 -1.8487 -11.9880 40 1 1.6766 -1.7489 1.2493 41 1 1.8933 1.0277 2.4985 42 1 0.4399 0.0001 2.4985 43 1 1.6756 -1.7490 3.7476 44 1 1.6764 -0.2074 4.6377 45 1 3.9323 -1.2358 4.6384 46 1 3.9330 0.3054 3.7483 47 1 3.7156 -2.4710 2.4988 48 1 5.1693 -1.4435 2.4990 49 1 3.9329 -1.2360 0.3591 50 1 3.9336 0.3057 1.2488 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815245708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:26:59 Heat of formation + Delta-G solvation = -154.190239 kcal Electronic energy + Delta-G solvation = -23507.701732 eV Core-core repulsion = 20111.351056 eV Total energy + Delta-G solvation = -3396.350676 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 296.214 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.51824 -39.40659 -36.82846 -34.96787 -34.67933 -32.66295 -31.28678 -30.07024 -29.48026 -27.27693 -25.67823 -23.56052 -22.85033 -22.40246 -20.55659 -20.41991 -20.10941 -19.98179 -17.50202 -16.72587 -16.23958 -16.16203 -15.85942 -15.21851 -14.63609 -14.55552 -14.42983 -14.27540 -13.84745 -13.72382 -13.39938 -12.88894 -12.75498 -12.59925 -12.46040 -12.21154 -11.82123 -11.76246 -11.68197 -11.61221 -11.50835 -11.43244 -11.11260 -10.98532 -10.80018 -10.66141 -10.57789 -10.55505 -10.47171 -10.44672 -10.25168 -10.15335 -9.63517 -9.27240 -9.02075 -8.30532 -5.95444 -3.98081 2.34495 2.69088 3.35696 3.40037 3.42366 4.20495 4.22442 4.33297 4.48945 4.51372 4.66526 4.78322 4.88193 4.91902 4.95718 5.08447 5.13443 5.16966 5.19575 5.24660 5.29549 5.29815 5.35405 5.39892 5.44989 5.48881 5.57223 5.67798 5.69828 5.75153 5.77053 5.78739 5.83374 5.91005 5.95231 6.05772 6.07613 6.13017 6.21929 6.45481 6.51785 6.78296 6.96502 7.17451 7.72880 7.87926 7.88133 8.05316 8.47052 9.09237 9.65539 11.15808 Molecular weight = 296.21amu Principal moments of inertia in cm(-1) A = 0.045305 B = 0.001872 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.891325 B =14955.156640 C =15337.056482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 H 0.082 0.918 4 C 0.067 3.933 5 O -0.361 6.361 6 C 0.459 3.541 7 O -0.507 6.507 8 C -0.112 4.112 9 C -0.108 4.108 10 C -0.110 4.110 11 C 0.020 3.980 12 C -0.522 4.522 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.895 5.895 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.079 4.079 21 C -0.114 4.114 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.120 4.120 25 C -0.122 4.122 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.261 0.739 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.066 0.934 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.876 3.209 31.879 32.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.104 4.104 3 H 0.100 0.900 4 C -0.007 4.007 5 O -0.278 6.278 6 C 0.302 3.698 7 O -0.394 6.394 8 C -0.149 4.149 9 C -0.146 4.146 10 C -0.148 4.148 11 C -0.017 4.017 12 C -0.560 4.560 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.535 5.535 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.098 4.098 21 C -0.151 4.151 22 C -0.157 4.157 23 C -0.158 4.158 24 C -0.157 4.157 25 C -0.160 4.160 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.084 0.916 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.597 2.759 31.774 31.999 hybrid contribution -0.089 0.254 -0.880 0.920 sum -2.686 3.012 30.894 31.157 Atomic orbital electron populations 1.21877 0.94312 1.02065 1.02362 1.21208 0.96839 1.00438 0.91941 0.90004 1.23174 1.00364 0.94973 0.82191 1.86499 1.72945 1.53132 1.15223 1.24194 0.76103 0.84093 0.85414 1.90667 1.37007 1.24107 1.87640 1.21597 1.04067 1.00699 0.88567 1.21571 1.01448 0.99194 0.92379 1.21651 1.00147 0.99006 0.93954 1.19097 0.96374 0.95339 0.90913 1.21241 1.35086 1.08374 0.91284 0.92739 1.25043 0.95261 0.95055 0.99209 1.69963 1.38396 1.19753 1.25343 0.86656 0.78737 0.79739 0.82833 1.20278 1.21327 1.20279 1.21143 0.95448 0.99793 0.93411 1.21616 1.00587 0.99348 0.93565 1.21535 0.95704 1.00783 0.97704 1.21545 0.95731 1.00761 0.97758 1.21537 1.00276 0.99433 0.94477 1.21728 0.94977 1.01173 0.98099 0.91751 0.92748 0.92159 0.91444 0.91019 0.87961 0.87942 0.91573 0.91589 0.93216 0.93215 0.96551 0.96547 0.92982 0.90861 0.91831 0.91474 0.92031 0.92081 0.92223 0.92042 0.91989 0.91994 0.91579 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.74 37.16 0.32 -0.79 16 2 C -0.09 -0.68 2.22 -90.62 -0.20 -0.88 16 3 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 4 C 0.07 0.70 4.62 37.16 0.17 0.87 16 5 O -0.36 -4.54 9.76 -39.27 -0.38 -4.92 16 6 C 0.46 6.72 7.96 36.01 0.29 7.01 16 7 O -0.51 -9.01 15.73 -18.75 -0.29 -9.31 16 8 C -0.11 -1.52 5.81 -27.89 -0.16 -1.69 16 9 C -0.11 -1.91 4.50 -26.73 -0.12 -2.03 16 10 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 11 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 12 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 16 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 C -0.08 -0.53 1.77 -90.62 -0.16 -0.69 16 21 C -0.11 -0.66 4.85 -26.73 -0.13 -0.79 16 22 C -0.12 -0.65 5.92 -26.73 -0.16 -0.81 16 23 C -0.12 -0.68 5.92 -26.73 -0.16 -0.84 16 24 C -0.12 -0.75 5.92 -26.71 -0.16 -0.91 16 25 C -0.12 -0.85 4.86 -26.71 -0.13 -0.98 16 26 H 0.06 0.55 7.82 -51.93 -0.41 0.14 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.37 6.43 -51.93 -0.33 0.04 16 29 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 30 H 0.07 0.77 6.16 -51.93 -0.32 0.45 16 31 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.07 1.23 8.10 -51.93 -0.42 0.80 16 34 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.37 6.43 -51.93 -0.33 0.03 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.07 0.51 6.32 -51.93 -0.33 0.18 16 50 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 389.41 15.07 5.87 5.87 Total: -1.00 -31.88 389.41 -10.09 -41.97 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -9.71 Total: -5.46 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -1.28 Total: -18.32 kcal Atomic # 7 Polarization: -27.46 SS G_CDS: 0.74 Total: -26.73 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.68 Total: -14.22 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.88 -10.09 -41.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815245708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.217 kcal (2) G-P(sol) polarization free energy of solvation -31.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds