Wall clock time and date at job start Fri Apr 10 2020 20:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47604 * 2 1 4 4 C 1.52998 * 109.47336 * 239.99810 * 2 1 3 5 5 O 1.45196 * 109.47070 * 65.00054 * 4 2 1 6 6 C 1.34234 * 116.99938 * 180.02562 * 5 4 2 7 7 O 1.20826 * 119.99712 * 359.72483 * 6 5 4 8 8 C 1.50700 * 120.00068 * 180.02562 * 6 5 4 9 9 C 1.52994 * 109.46890 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.46910 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.47351 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47004 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00315 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99724 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00031 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00013 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47273 * 60.00180 * 16 14 12 18 18 H 1.48495 * 109.47159 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47290 * 300.00377 * 16 14 12 20 20 C 1.52999 * 109.47000 * 119.99821 * 2 1 3 21 21 C 1.53008 * 109.47121 * 300.00161 * 20 2 1 22 22 C 1.52999 * 109.47121 * 179.97438 * 21 20 2 23 23 C 1.52997 * 109.47373 * 59.99473 * 22 21 20 24 24 C 1.52998 * 109.47449 * 300.00286 * 23 22 21 25 25 C 1.52994 * 109.47594 * 179.97438 * 20 2 1 26 26 H 1.09007 * 109.46771 * 60.00101 * 1 2 3 27 27 H 1.09000 * 109.47245 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47311 * 300.00568 * 1 2 3 29 29 H 1.09012 * 109.46921 * 305.00044 * 4 2 1 30 30 H 1.08996 * 109.47090 * 185.00422 * 4 2 1 31 31 H 1.08992 * 109.47012 * 300.00044 * 8 6 5 32 32 H 1.08999 * 109.46550 * 59.99877 * 8 6 5 33 33 H 1.09000 * 109.47301 * 299.99645 * 9 8 6 34 34 H 1.08999 * 109.47498 * 60.00613 * 9 8 6 35 35 H 1.08997 * 109.47464 * 300.00500 * 10 9 8 36 36 H 1.09002 * 109.47168 * 60.00243 * 10 9 8 37 37 H 1.09005 * 109.47089 * 300.00351 * 11 10 9 38 38 H 1.09002 * 109.46787 * 60.00009 * 11 10 9 39 39 H 0.97001 * 120.00302 * 179.97438 * 15 14 12 40 40 H 1.09000 * 109.47181 * 59.99887 * 20 2 1 41 41 H 1.08995 * 109.46896 * 299.99462 * 21 20 2 42 42 H 1.08996 * 109.46987 * 59.99711 * 21 20 2 43 43 H 1.09000 * 109.47181 * 299.99727 * 22 21 20 44 44 H 1.08995 * 109.47289 * 179.97438 * 22 21 20 45 45 H 1.08999 * 109.47516 * 179.97438 * 23 22 21 46 46 H 1.09000 * 109.46760 * 59.99996 * 23 22 21 47 47 H 1.09000 * 109.46903 * 299.99622 * 24 23 22 48 48 H 1.08999 * 109.47508 * 179.97438 * 24 23 22 49 49 H 1.09005 * 109.46814 * 300.00397 * 25 20 2 50 50 H 1.09000 * 109.46895 * 59.99778 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 1.6560 0.0286 -2.4317 6 6 2.0291 -0.4734 -3.6195 7 8 2.6601 -1.5026 -3.6690 8 6 1.6667 0.2502 -4.8907 9 6 2.2079 -0.5274 -6.0921 10 6 1.8394 0.2070 -7.3828 11 6 2.3800 -0.5709 -8.5843 12 6 2.0176 0.1527 -9.8555 13 1 1.4581 1.0754 -9.8110 14 6 2.4013 -0.3626 -11.0755 15 7 3.0831 -1.4859 -11.1297 16 14 1.9528 0.5347 -12.6512 17 1 2.5485 1.8948 -12.6330 18 1 2.4774 -0.2204 -13.8173 19 1 0.4754 0.6427 -12.7560 20 6 2.0400 -0.7212 1.2493 21 6 1.5299 0.0001 2.4985 22 6 2.0393 -0.7215 3.7478 23 6 3.5693 -0.7222 3.7482 24 6 4.0794 -1.4434 2.4990 25 6 3.5699 -0.7218 1.2491 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6054 -1.7199 -1.2951 30 1 3.1263 -0.7995 -1.2055 31 1 0.5824 0.3294 -4.9672 32 1 2.1039 1.2486 -4.8776 33 1 3.2923 -0.6062 -6.0153 34 1 1.7710 -1.5259 -6.1053 35 1 0.7550 0.2855 -7.4594 36 1 2.2759 1.2057 -7.3699 37 1 3.4645 -0.6498 -8.5080 38 1 1.9431 -1.5695 -8.5970 39 1 3.3528 -1.8487 -11.9880 40 1 1.6766 -1.7489 1.2493 41 1 1.8933 1.0277 2.4985 42 1 0.4399 0.0001 2.4985 43 1 1.6756 -1.7490 3.7476 44 1 1.6764 -0.2074 4.6377 45 1 3.9323 -1.2358 4.6384 46 1 3.9330 0.3054 3.7483 47 1 3.7156 -2.4710 2.4988 48 1 5.1693 -1.4435 2.4990 49 1 3.9329 -1.2360 0.3591 50 1 3.9336 0.3057 1.2488 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815245708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:26:58 Heat of formation + Delta-G solvation = -168.520810 kcal Electronic energy + Delta-G solvation = -23508.323152 eV Core-core repulsion = 20111.351056 eV Total energy + Delta-G solvation = -3396.972096 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 296.214 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.60315 -40.03578 -37.88734 -36.63449 -35.37364 -34.65021 -31.83166 -31.66421 -30.14361 -28.33235 -27.22991 -24.70102 -23.79592 -23.20177 -22.00526 -21.46420 -21.01425 -20.66229 -18.65336 -18.36561 -17.79442 -17.28754 -16.49679 -16.44559 -16.29170 -15.59895 -15.13877 -14.83826 -14.71148 -14.57870 -14.49763 -14.13598 -13.90557 -13.68759 -13.49945 -13.35739 -13.27588 -12.95596 -12.79929 -12.48833 -12.38978 -12.27048 -12.19112 -12.18467 -12.08306 -11.96889 -11.73047 -11.62689 -11.50627 -11.37828 -11.31781 -11.29379 -11.07898 -10.86392 -10.73219 -10.53580 -8.18086 -6.30018 1.18666 1.41150 1.44938 1.52742 1.66561 2.42672 3.14680 3.54354 3.63724 3.75311 3.82812 3.90954 4.01379 4.08523 4.11099 4.24450 4.31649 4.36345 4.44694 4.53750 4.59281 4.62167 4.64187 4.65096 4.70800 4.76214 4.78188 4.82421 4.86002 4.96744 5.02224 5.14311 5.15310 5.17256 5.26523 5.27911 5.30241 5.31318 5.32678 5.35758 5.43541 5.46198 5.53350 5.57044 5.61777 5.77901 5.88413 6.25833 6.74794 6.88184 7.39440 8.93789 Molecular weight = 296.21amu Principal moments of inertia in cm(-1) A = 0.045305 B = 0.001872 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.891325 B =14955.156640 C =15337.056482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.078 4.078 3 H 0.084 0.916 4 C 0.062 3.938 5 O -0.354 6.354 6 C 0.463 3.537 7 O -0.546 6.546 8 C -0.103 4.103 9 C -0.100 4.100 10 C -0.096 4.096 11 C 0.018 3.982 12 C -0.543 4.543 13 H 0.066 0.934 14 C -0.006 4.006 15 N -0.937 5.937 16 Si 0.969 3.031 17 H -0.265 1.265 18 H -0.286 1.286 19 H -0.265 1.265 20 C -0.074 4.074 21 C -0.111 4.111 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.120 4.120 25 C -0.123 4.123 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.063 0.937 37 H -0.014 1.014 38 H -0.014 1.014 39 H 0.263 0.737 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.061 0.939 49 H 0.053 0.947 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.243 5.276 32.888 33.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.096 4.096 3 H 0.103 0.897 4 C -0.011 4.011 5 O -0.270 6.270 6 C 0.308 3.692 7 O -0.436 6.436 8 C -0.140 4.140 9 C -0.138 4.138 10 C -0.134 4.134 11 C -0.019 4.019 12 C -0.581 4.581 13 H 0.085 0.915 14 C -0.204 4.204 15 N -0.577 5.577 16 Si 0.793 3.207 17 H -0.190 1.190 18 H -0.211 1.211 19 H -0.190 1.190 20 C -0.093 4.093 21 C -0.148 4.148 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.157 4.157 25 C -0.160 4.160 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.005 0.995 38 H 0.005 0.995 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.071 0.929 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.980 4.850 32.812 33.406 hybrid contribution 0.370 -0.437 -1.143 1.278 sum -3.610 4.413 31.669 32.178 Atomic orbital electron populations 1.21872 0.93711 1.02143 1.02735 1.21197 0.97246 1.00265 0.90922 0.89731 1.23401 1.00303 0.95078 0.82366 1.86490 1.72408 1.52978 1.15143 1.24340 0.75183 0.83394 0.86292 1.90663 1.38911 1.25870 1.88193 1.21490 1.05620 1.00742 0.86115 1.21351 1.00506 0.98765 0.93190 1.21443 1.00671 0.98780 0.92460 1.19060 0.94521 0.94773 0.93565 1.21732 1.35112 1.08921 0.92331 0.91547 1.26082 0.95004 0.95867 1.03418 1.70120 1.39631 1.21575 1.26395 0.85442 0.78978 0.78587 0.77677 1.18962 1.21111 1.18964 1.21105 0.95160 0.99644 0.93391 1.21600 1.00970 0.99261 0.92976 1.21536 0.95447 1.00805 0.97865 1.21542 0.95967 1.00720 0.97465 1.21537 1.00314 0.99322 0.94572 1.21720 0.95262 1.01105 0.97937 0.92664 0.92842 0.90492 0.92061 0.91470 0.85305 0.85299 0.93212 0.93222 0.91809 0.91814 0.99529 0.99517 0.92876 0.91187 0.91625 0.90788 0.92152 0.91182 0.91677 0.91963 0.92242 0.92007 0.92864 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.74 71.98 0.63 -1.33 16 2 C -0.08 -1.13 2.22 -10.79 -0.02 -1.16 16 3 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 4 C 0.06 1.28 4.62 71.98 0.33 1.61 16 5 O -0.35 -8.47 9.76 -51.46 -0.50 -8.98 16 6 C 0.46 13.20 7.96 71.24 0.57 13.76 16 7 O -0.55 -19.70 15.73 21.96 0.35 -19.36 16 8 C -0.10 -2.59 5.81 29.85 0.17 -2.42 16 9 C -0.10 -3.52 4.50 30.59 0.14 -3.38 16 10 C -0.10 -3.85 5.15 30.60 0.16 -3.69 16 11 C 0.02 0.97 4.97 29.85 0.15 1.12 16 12 C -0.54 -31.33 9.11 25.60 0.23 -31.10 16 13 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 14 C -0.01 -0.38 5.46 84.66 0.46 0.09 16 15 N -0.94 -58.72 13.29 21.45 0.28 -58.44 16 16 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 17 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 20 C -0.07 -0.92 1.77 -10.79 -0.02 -0.94 16 21 C -0.11 -1.07 4.85 30.60 0.15 -0.92 16 22 C -0.12 -1.09 5.92 30.59 0.18 -0.91 16 23 C -0.12 -1.18 5.92 30.59 0.18 -1.00 16 24 C -0.12 -1.43 5.92 30.61 0.18 -1.24 16 25 C -0.12 -1.64 4.86 30.61 0.15 -1.50 16 26 H 0.05 0.84 7.82 -2.38 -0.02 0.83 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.08 0.77 6.43 -2.39 -0.02 0.76 16 29 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.07 1.45 6.16 -2.39 -0.01 1.44 16 31 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.05 1.88 8.10 -2.39 -0.02 1.86 16 34 H 0.05 1.88 8.10 -2.39 -0.02 1.86 16 35 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 37 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 38 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 39 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 40 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 41 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.07 0.63 6.43 -2.39 -0.02 0.62 16 43 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.05 0.84 6.32 -2.38 -0.02 0.83 16 50 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -69.82 389.41 6.65 -63.16 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 0.86 Total: 9.88 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: 3.64 Total: -33.01 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.28 Total: -58.44 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.16 Total: -28.33 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -69.82 6.65 -63.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815245708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.356 kcal (2) G-P(sol) polarization free energy of solvation -69.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds