Wall clock time and date at job start Fri Apr 10 2020 20:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47112 * 2 1 4 4 C 1.52999 * 109.47315 * 239.99978 * 2 1 3 5 5 C 1.50704 * 109.47133 * 120.00014 * 2 1 3 6 6 O 1.21278 * 119.99862 * 4.76360 * 5 2 1 7 7 N 1.34779 * 120.00015 * 184.76755 * 5 2 1 8 8 C 1.46494 * 119.99959 * 185.43910 * 7 5 2 9 9 C 1.53000 * 109.47079 * 184.46387 * 8 7 5 10 10 H 1.08993 * 109.70129 * 300.38302 * 9 8 7 11 11 C 1.52763 * 109.50827 * 180.26901 * 9 8 7 12 12 C 1.53040 * 109.38480 * 185.70688 * 11 9 8 13 13 C 1.53039 * 109.54119 * 61.23306 * 12 11 9 14 14 C 1.52996 * 109.50072 * 178.68814 * 13 12 11 15 15 C 1.53001 * 109.49344 * 58.59096 * 13 12 11 16 16 C 1.53190 * 109.31327 * 298.64362 * 13 12 11 17 17 N 1.46920 * 109.58828 * 60.73995 * 9 8 7 18 18 C 1.36933 * 120.63187 * 353.42169 * 17 9 8 19 19 H 1.07996 * 120.00411 * 33.75463 * 18 17 9 20 20 C 1.38815 * 120.00194 * 213.76087 * 18 17 9 21 21 N 1.31619 * 119.99847 * 16.14169 * 20 18 17 22 22 Si 1.86795 * 120.00189 * 196.14206 * 20 18 17 23 23 H 1.48498 * 109.47151 * 54.97876 * 22 20 18 24 24 H 1.48507 * 109.46996 * 174.97497 * 22 20 18 25 25 H 1.48496 * 109.47238 * 294.97400 * 22 20 18 26 26 H 1.08994 * 109.47336 * 300.00127 * 1 2 3 27 27 H 1.09001 * 109.47369 * 60.00046 * 1 2 3 28 28 H 1.08999 * 109.47373 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46911 * 184.88174 * 3 2 1 30 30 H 1.08997 * 109.46758 * 304.88070 * 3 2 1 31 31 H 1.09001 * 109.46954 * 64.88035 * 3 2 1 32 32 H 1.09003 * 109.47261 * 299.99906 * 4 2 1 33 33 H 1.09007 * 109.47001 * 60.00120 * 4 2 1 34 34 H 1.08999 * 109.47189 * 179.97438 * 4 2 1 35 35 H 0.97003 * 120.00159 * 5.43028 * 7 5 2 36 36 H 1.09003 * 109.47717 * 64.45829 * 8 7 5 37 37 H 1.09010 * 109.46849 * 304.45958 * 8 7 5 38 38 H 1.08995 * 109.56866 * 65.66703 * 11 9 8 39 39 H 1.09004 * 109.38671 * 305.62833 * 11 9 8 40 40 H 1.09003 * 109.45378 * 301.21883 * 12 11 9 41 41 H 1.08996 * 109.46067 * 181.26080 * 12 11 9 42 42 H 1.08995 * 109.47501 * 179.84118 * 14 13 12 43 43 H 1.09011 * 109.47058 * 299.84109 * 14 13 12 44 44 H 1.09003 * 109.47113 * 59.83548 * 14 13 12 45 45 H 1.09003 * 109.47169 * 300.16228 * 15 13 12 46 46 H 1.09004 * 109.47122 * 60.16035 * 15 13 12 47 47 H 1.09003 * 109.47423 * 180.16108 * 15 13 12 48 48 H 1.09008 * 109.58419 * 294.83999 * 16 13 12 49 49 H 1.09002 * 109.70182 * 174.49109 * 16 13 12 50 50 H 0.97008 * 119.99883 * 5.22060 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2476 -1.2463 1.9841 7 7 3.3536 -0.7502 1.4934 8 6 3.8523 -1.5399 2.6220 9 6 5.3605 -1.3270 2.7665 10 1 5.8646 -1.6364 1.8510 11 6 5.8827 -2.1554 3.9390 12 6 7.3606 -1.8324 4.1708 13 6 7.5121 -0.3499 4.5190 14 6 8.9860 -0.0352 4.7825 15 6 6.6899 -0.0326 5.7697 16 6 7.0094 0.4996 3.3475 17 7 5.6351 0.0932 3.0240 18 6 4.6281 1.0195 2.9693 19 1 3.6286 0.7495 3.2764 20 6 4.8920 2.3058 2.5188 21 7 6.0003 2.5558 1.8542 22 14 3.6744 3.6816 2.8557 23 1 3.4107 3.7630 4.3148 24 1 4.2404 4.9705 2.3824 25 1 2.4042 3.4054 2.1377 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1264 1.4438 -0.0875 30 1 1.6070 1.9809 -0.8430 31 1 1.7497 1.9305 0.9305 32 1 1.6767 -1.7489 -1.2492 33 1 1.6766 -0.2074 -2.1393 34 1 3.1300 -0.7208 -1.2494 35 1 3.9743 -0.2561 0.9353 36 1 3.6498 -2.5961 2.4442 37 1 3.3514 -1.2229 3.5368 38 1 5.7731 -3.2162 3.7140 39 1 5.3124 -1.9128 4.8357 40 1 7.9266 -2.0525 3.2656 41 1 7.7403 -2.4392 4.9927 42 1 9.0938 1.0213 5.0277 43 1 9.3432 -0.6400 5.6162 44 1 9.5711 -0.2630 3.8915 45 1 5.6403 -0.2584 5.5815 46 1 7.0479 -0.6373 6.6029 47 1 6.7958 1.0240 6.0158 48 1 7.6508 0.3422 2.4803 49 1 7.0230 1.5535 3.6255 50 1 6.5958 1.8290 1.6133 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099321302.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:27:26 Heat of formation + Delta-G solvation = -44.534551 kcal Electronic energy + Delta-G solvation = -26970.255861 eV Core-core repulsion = 23610.952963 eV Total energy + Delta-G solvation = -3359.302897 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 296.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.67445 -38.69986 -35.40459 -34.91875 -33.46892 -32.11078 -29.76339 -27.66702 -27.05695 -26.72124 -26.67480 -25.46946 -23.86596 -22.17498 -21.63674 -20.25302 -18.72453 -17.89408 -17.07864 -16.10141 -15.48450 -15.39083 -14.48866 -14.34443 -14.04156 -13.85647 -13.60630 -13.46716 -13.41792 -13.18887 -12.81222 -12.50989 -12.11284 -12.08759 -11.88881 -11.86963 -11.58082 -11.47568 -11.43763 -11.39150 -11.27293 -10.88596 -10.76760 -10.74539 -10.56120 -10.41676 -10.26314 -10.04899 -9.94943 -9.86919 -9.61782 -9.12600 -8.95795 -8.50952 -8.13134 -6.83985 -6.00178 -3.32712 3.31679 3.42818 3.49369 3.64852 3.92946 4.51720 5.03060 5.06588 5.15457 5.20906 5.26906 5.36205 5.41390 5.55270 5.63400 5.66931 5.78098 5.80850 5.87650 5.93200 5.99333 6.03510 6.08350 6.10554 6.14548 6.18953 6.21749 6.25363 6.29664 6.35761 6.36787 6.39131 6.41107 6.45526 6.54771 6.57052 6.73285 6.74723 6.83321 6.87828 6.94537 7.16743 7.20777 7.27313 8.07760 8.33863 8.58535 8.96409 9.07186 9.80999 10.26854 11.22669 Molecular weight = 296.22amu Principal moments of inertia in cm(-1) A = 0.015651 B = 0.006433 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.542925 B = 4351.521474 C = 5404.974410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.086 4.086 3 C -0.144 4.144 4 C -0.135 4.135 5 C 0.519 3.481 6 O -0.567 6.567 7 N -0.689 5.689 8 C 0.137 3.863 9 C 0.163 3.837 10 H 0.027 0.973 11 C -0.131 4.131 12 C -0.095 4.095 13 C -0.089 4.089 14 C -0.135 4.135 15 C -0.124 4.124 16 C 0.166 3.834 17 N -0.592 5.592 18 C -0.333 4.333 19 H 0.058 0.942 20 C -0.016 4.016 21 N -0.923 5.923 22 Si 1.052 2.948 23 H -0.296 1.296 24 H -0.287 1.287 25 H -0.285 1.285 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.410 0.590 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.047 0.953 42 H 0.051 0.949 43 H 0.044 0.956 44 H 0.048 0.952 45 H 0.066 0.934 46 H 0.032 0.968 47 H 0.045 0.955 48 H 0.015 0.985 49 H 0.077 0.923 50 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.838 -6.147 -1.922 6.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.089 4.089 3 C -0.201 4.201 4 C -0.193 4.193 5 C 0.304 3.696 6 O -0.447 6.447 7 N -0.338 5.338 8 C 0.013 3.987 9 C 0.056 3.944 10 H 0.045 0.955 11 C -0.171 4.171 12 C -0.133 4.133 13 C -0.091 4.091 14 C -0.193 4.193 15 C -0.182 4.182 16 C 0.040 3.960 17 N -0.316 5.316 18 C -0.463 4.463 19 H 0.076 0.924 20 C -0.219 4.219 21 N -0.564 5.564 22 Si 0.883 3.117 23 H -0.223 1.223 24 H -0.212 1.212 25 H -0.213 1.213 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.247 0.753 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.085 0.915 46 H 0.051 0.949 47 H 0.064 0.936 48 H 0.033 0.967 49 H 0.095 0.905 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.660 -4.881 -1.578 5.392 hybrid contribution 0.664 -1.369 0.074 1.524 sum -0.997 -6.251 -1.504 6.506 Atomic orbital electron populations 1.21611 0.92771 1.02159 1.01522 1.20759 0.97304 0.96929 0.93888 1.21976 1.02271 0.93233 1.02635 1.21815 1.01375 0.99964 0.96157 1.20376 0.82532 0.80017 0.86630 1.90605 1.55772 1.48209 1.50076 1.45842 1.07183 1.49345 1.31440 1.21215 0.94293 0.92974 0.90264 1.20618 0.92136 0.86961 0.94680 0.95530 1.21936 0.96652 0.98273 1.00189 1.21402 0.96058 0.95898 0.99922 1.21126 0.94180 0.95767 0.98020 1.21786 0.96178 1.00996 1.00372 1.21698 1.01020 1.00105 0.95340 1.21013 0.85122 0.97979 0.91836 1.44084 1.05367 1.01354 1.80800 1.19916 0.91217 0.93685 1.41470 0.92424 1.25704 1.01166 0.98987 0.96000 1.70795 1.13451 1.36178 1.35980 0.83753 0.75231 0.76686 0.76068 1.22295 1.21245 1.21253 0.92227 0.92612 0.92341 0.91120 0.92387 0.91518 0.92611 0.91859 0.92122 0.75297 0.93313 0.91535 0.93078 0.91592 0.92990 0.93447 0.92950 0.93711 0.93325 0.91506 0.94859 0.93558 0.96719 0.90454 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 7.77 37.15 0.29 -1.52 16 2 C -0.09 -1.36 0.89 -155.66 -0.14 -1.50 16 3 C -0.14 -2.39 8.26 37.16 0.31 -2.08 16 4 C -0.14 -1.79 8.42 37.16 0.31 -1.48 16 5 C 0.52 10.03 6.48 -10.98 -0.07 9.96 16 6 O -0.57 -12.62 15.97 5.56 0.09 -12.53 16 7 N -0.69 -13.20 3.65 -60.29 -0.22 -13.42 16 8 C 0.14 2.61 4.45 -4.05 -0.02 2.59 16 9 C 0.16 3.06 2.98 -67.82 -0.20 2.86 16 10 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 11 C -0.13 -2.16 5.00 -26.83 -0.13 -2.29 16 12 C -0.10 -1.51 4.71 -26.69 -0.13 -1.64 16 13 C -0.09 -1.56 0.77 -154.39 -0.12 -1.67 16 14 C -0.14 -2.08 8.48 37.16 0.32 -1.76 16 15 C -0.12 -2.21 7.99 37.16 0.30 -1.91 16 16 C 0.17 3.52 3.26 -3.71 -0.01 3.51 16 17 N -0.59 -12.83 2.26 -165.03 -0.37 -13.20 16 18 C -0.33 -8.07 6.95 -15.06 -0.10 -8.17 16 19 H 0.06 1.50 6.02 -52.49 -0.32 1.18 16 20 C -0.02 -0.41 4.89 -17.43 -0.09 -0.50 16 21 N -0.92 -25.01 12.55 55.49 0.70 -24.32 16 22 Si 1.05 24.15 29.94 -169.99 -5.09 19.06 16 23 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.17 5.66 56.52 0.32 -5.85 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.86 8.05 -51.93 -0.42 0.44 16 29 H 0.07 1.27 7.38 -51.93 -0.38 0.89 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.25 6.69 -51.93 -0.35 0.91 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 35 H 0.41 8.09 6.72 -40.82 -0.27 7.81 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.43 7.34 -51.92 -0.38 1.05 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.15 6.33 -51.93 -0.33 0.82 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.31 5.97 -51.93 -0.31 1.00 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.01 0.33 7.70 -51.92 -0.40 -0.07 16 49 H 0.08 1.89 6.49 -51.93 -0.34 1.56 16 50 H 0.27 7.32 6.15 -40.82 -0.25 7.07 16 LS Contribution 370.60 15.07 5.58 5.58 Total: -1.00 -27.22 370.60 -8.19 -35.41 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -9.39 Total: 9.03 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 0.51 Total: -5.61 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: 0.10 Total: -50.94 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.09 Total: -12.53 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -5.09 Total: 19.06 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -27.22 -8.19 -35.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099321302.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.123 kcal (2) G-P(sol) polarization free energy of solvation -27.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds