Wall clock time and date at job start Fri Apr 10 2020 20:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47410 * 2 1 4 4 C 1.52993 * 109.47211 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46984 * 300.00324 * 3 2 1 6 6 C 1.53001 * 109.47261 * 299.99565 * 5 3 2 7 7 C 1.50700 * 109.47124 * 59.99773 * 3 2 1 8 8 O 1.21279 * 120.00530 * 240.00323 * 7 3 2 9 9 N 1.34785 * 119.99437 * 60.27400 * 7 3 2 10 10 C 1.46496 * 119.99603 * 179.72700 * 9 7 3 11 11 C 1.52996 * 109.47224 * 175.16307 * 10 9 7 12 12 N 1.46505 * 110.01423 * 303.89680 * 11 10 9 13 13 C 1.36928 * 120.00390 * 301.43007 * 12 11 10 14 14 H 1.08008 * 119.99728 * 354.60669 * 13 12 11 15 15 C 1.38817 * 120.00437 * 174.60297 * 13 12 11 16 16 N 1.31617 * 119.99672 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00144 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46722 * 60.00237 * 17 15 13 19 19 H 1.48494 * 109.46806 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47073 * 300.00389 * 17 15 13 21 21 C 1.54262 * 110.03657 * 182.45996 * 11 10 9 22 22 C 1.54892 * 104.19679 * 217.10216 * 21 11 10 23 23 C 1.54889 * 102.74773 * 37.94281 * 22 21 11 24 24 C 1.53880 * 110.03586 * 65.28991 * 11 10 9 25 25 H 1.08998 * 109.46782 * 300.00128 * 1 2 3 26 26 H 1.09007 * 109.46747 * 59.99923 * 1 2 3 27 27 H 1.08998 * 109.47363 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47033 * 240.00405 * 2 1 3 29 29 H 1.08999 * 109.47330 * 120.00155 * 2 1 3 30 30 H 1.08999 * 109.47463 * 300.00114 * 4 3 2 31 31 H 1.08999 * 109.47297 * 60.00239 * 4 3 2 32 32 H 1.08998 * 109.47134 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47710 * 59.99765 * 5 3 2 34 34 H 1.09005 * 109.47019 * 180.02562 * 5 3 2 35 35 H 1.08999 * 109.47278 * 180.02562 * 6 5 3 36 36 H 1.09000 * 109.46922 * 300.00683 * 6 5 3 37 37 H 1.08998 * 109.46694 * 60.00163 * 6 5 3 38 38 H 0.96995 * 120.00164 * 359.72474 * 9 7 3 39 39 H 1.09005 * 109.46960 * 295.15608 * 10 9 7 40 40 H 1.08998 * 109.47775 * 55.16026 * 10 9 7 41 41 H 0.97003 * 119.99493 * 121.42783 * 12 11 10 42 42 H 0.96995 * 119.99743 * 179.97438 * 16 15 13 43 43 H 1.09005 * 110.48415 * 335.77797 * 21 11 10 44 44 H 1.08997 * 110.48919 * 98.42379 * 21 11 10 45 45 H 1.09000 * 110.75607 * 279.62542 * 22 21 11 46 46 H 1.09001 * 110.75363 * 156.25498 * 22 21 11 47 47 H 1.08996 * 110.48303 * 203.38071 * 23 22 21 48 48 H 1.08994 * 110.48999 * 80.73873 * 23 22 21 49 49 H 1.09004 * 110.02805 * 238.57460 * 24 11 10 50 50 H 1.08998 * 110.03071 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 1.5301 2.1637 -1.2492 6 6 2.0400 1.4426 -2.4985 7 6 1.5377 2.1529 1.2304 8 8 0.8405 3.1390 1.1192 9 7 1.8679 1.6956 2.4546 10 6 1.3845 2.3897 3.6507 11 6 1.7972 1.6049 4.8975 12 7 1.2988 0.2299 4.8123 13 6 -0.0440 -0.0050 4.6835 14 1 -0.7431 0.8169 4.7323 15 6 -0.5069 -1.2994 4.4903 16 7 0.3449 -2.3009 4.4313 17 14 -2.3389 -1.6198 4.3154 18 1 -2.8623 -0.8728 3.1435 19 1 -2.5707 -3.0735 4.1203 20 1 -3.0400 -1.1676 5.5439 21 6 1.2418 2.2918 6.1622 22 6 2.3615 2.1086 7.2167 23 6 3.6522 2.2881 6.3795 24 6 3.3298 1.6025 5.0357 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.9330 0.9287 0.8908 31 1 3.9337 0.9285 -0.8891 32 1 3.9334 2.4701 0.0002 33 1 0.4401 2.1638 -1.2492 34 1 1.8938 3.1913 -1.2494 35 1 1.6770 1.9567 -3.3884 36 1 3.1300 1.4425 -2.4984 37 1 1.6767 0.4149 -2.4985 38 1 2.4255 0.9069 2.5435 39 1 1.8177 3.3892 3.6907 40 1 0.2979 2.4658 3.6125 41 1 1.9202 -0.5142 4.8470 42 1 0.0214 -3.2054 4.2966 43 1 1.0642 3.3507 5.9744 44 1 0.3249 1.8025 6.4906 45 1 2.3205 1.1112 7.6544 46 1 2.2930 2.8741 7.9897 47 1 4.4942 1.7961 6.8663 48 1 3.8638 3.3463 6.2267 49 1 3.7026 0.5782 5.0401 50 1 3.7795 2.1608 4.2147 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753670725.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:34:52 Heat of formation + Delta-G solvation = -58.759075 kcal Electronic energy + Delta-G solvation = -26518.143347 eV Core-core repulsion = 23158.223628 eV Total energy + Delta-G solvation = -3359.919719 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 296.221 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.03164 -38.41106 -36.27496 -34.04121 -33.27549 -31.08351 -30.60007 -29.57256 -28.25683 -27.63716 -25.15950 -24.25974 -23.18331 -23.02279 -21.08182 -20.08923 -18.82719 -18.08936 -16.96483 -16.51149 -15.63066 -15.47808 -15.20404 -14.65997 -14.52337 -14.21156 -13.87256 -13.46064 -13.31084 -13.20333 -12.70003 -12.67761 -12.52429 -12.34452 -11.95721 -11.78166 -11.61922 -11.45048 -11.40399 -11.07049 -11.02241 -10.79153 -10.72731 -10.69165 -10.61317 -10.52814 -10.26212 -10.23357 -10.14632 -10.13345 -9.85434 -9.62885 -9.11745 -8.87094 -8.30389 -6.99499 -5.79520 -3.07821 3.23661 3.42564 3.47200 3.49428 3.82031 4.57482 4.82368 4.93580 5.02687 5.12086 5.13941 5.24149 5.37844 5.40268 5.54242 5.57220 5.63783 5.65403 5.70633 5.77804 5.83967 5.90552 5.94830 5.96197 5.97853 6.01714 6.05154 6.09387 6.19310 6.19971 6.27414 6.31701 6.35436 6.40849 6.44927 6.46893 6.58069 6.59295 6.64357 6.77659 6.78252 6.84433 7.03322 7.19594 7.71557 8.20195 8.39002 8.85671 9.51040 10.04839 10.40571 11.42383 Molecular weight = 296.22amu Principal moments of inertia in cm(-1) A = 0.011312 B = 0.006761 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.549727 B = 4140.690627 C = 5802.420286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.079 4.079 4 C -0.141 4.141 5 C -0.099 4.099 6 C -0.155 4.155 7 C 0.522 3.478 8 O -0.559 6.559 9 N -0.698 5.698 10 C 0.120 3.880 11 C 0.189 3.811 12 N -0.709 5.709 13 C -0.230 4.230 14 H 0.067 0.933 15 C -0.006 4.006 16 N -0.930 5.930 17 Si 0.897 3.103 18 H -0.286 1.286 19 H -0.292 1.292 20 H -0.287 1.287 21 C -0.132 4.132 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.125 4.125 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.400 0.600 39 H 0.047 0.953 40 H 0.065 0.935 41 H 0.384 0.616 42 H 0.254 0.746 43 H 0.051 0.949 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.053 0.947 47 H 0.057 0.943 48 H 0.058 0.942 49 H 0.068 0.932 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.361 6.641 -6.045 12.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.082 4.082 4 C -0.198 4.198 5 C -0.137 4.137 6 C -0.212 4.212 7 C 0.308 3.692 8 O -0.439 6.439 9 N -0.347 5.347 10 C -0.006 4.006 11 C 0.097 3.903 12 N -0.351 5.351 13 C -0.361 4.361 14 H 0.085 0.915 15 C -0.202 4.202 16 N -0.579 5.579 17 Si 0.728 3.272 18 H -0.213 1.213 19 H -0.218 1.218 20 H -0.214 1.214 21 C -0.172 4.172 22 C -0.154 4.154 23 C -0.158 4.158 24 C -0.163 4.163 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.236 0.764 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.218 0.782 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.086 0.914 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.684 7.308 -6.131 12.248 hybrid contribution -0.739 -0.940 0.027 1.196 sum 6.945 6.367 -6.103 11.226 Atomic orbital electron populations 1.21796 0.95276 1.01853 1.02058 1.21583 0.96824 0.93519 1.02740 1.20843 0.96544 0.96825 0.93966 1.21887 0.93233 1.02133 1.02563 1.21350 1.01593 0.98707 0.92058 1.21912 1.01087 1.00862 0.97315 1.20348 0.79978 0.84191 0.84681 1.90625 1.38851 1.27328 1.87053 1.45716 1.52506 1.31392 1.05058 1.21836 0.99776 0.93849 0.85135 1.20454 0.91097 0.87203 0.91556 1.42516 1.05419 0.99822 1.87318 1.19008 0.83644 0.92329 1.41108 0.91476 1.24627 0.97021 0.95834 1.02712 1.69629 1.32556 0.98824 1.56858 0.86423 0.85960 0.76779 0.78017 1.21271 1.21824 1.21408 1.22824 0.99283 0.99049 0.96034 1.22384 0.94738 1.01134 0.97186 1.22297 0.97761 0.99711 0.96041 1.22427 0.96036 1.00856 0.97029 0.91970 0.93001 0.92650 0.91318 0.90843 0.92158 0.91448 0.92444 0.91030 0.91788 0.92986 0.92607 0.92301 0.76439 0.93445 0.91693 0.78172 0.93616 0.93000 0.90334 0.91419 0.92785 0.92406 0.92334 0.91357 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.31 37.16 0.35 -2.21 16 2 C -0.11 -1.60 4.54 -26.73 -0.12 -1.73 16 3 C -0.08 -1.13 0.43 -155.66 -0.07 -1.19 16 4 C -0.14 -1.65 8.01 37.15 0.30 -1.35 16 5 C -0.10 -1.34 3.93 -26.73 -0.10 -1.45 16 6 C -0.15 -1.64 9.21 37.16 0.34 -1.30 16 7 C 0.52 9.40 5.22 -10.98 -0.06 9.34 16 8 O -0.56 -11.91 15.98 5.56 0.09 -11.82 16 9 N -0.70 -12.35 4.89 -60.30 -0.29 -12.64 16 10 C 0.12 2.24 3.99 -4.05 -0.02 2.22 16 11 C 0.19 3.40 0.68 -130.70 -0.09 3.31 16 12 N -0.71 -15.66 4.76 -46.19 -0.22 -15.88 16 13 C -0.23 -5.85 8.39 -15.06 -0.13 -5.98 16 14 H 0.07 1.75 7.23 -52.48 -0.38 1.37 16 15 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 16 N -0.93 -26.18 13.06 55.49 0.73 -25.46 16 17 Si 0.90 22.04 29.55 -169.99 -5.02 17.02 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 C -0.13 -2.27 5.94 -25.07 -0.15 -2.42 16 22 C -0.12 -1.75 6.91 -24.74 -0.17 -1.92 16 23 C -0.12 -1.63 6.83 -25.07 -0.17 -1.80 16 24 C -0.13 -1.90 5.80 -25.61 -0.15 -2.05 16 25 H 0.06 1.25 7.22 -51.93 -0.37 0.88 16 26 H 0.05 0.78 6.43 -51.92 -0.33 0.44 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.86 6.43 -51.93 -0.33 0.53 16 29 H 0.07 1.19 7.57 -51.93 -0.39 0.80 16 30 H 0.06 0.69 7.55 -51.93 -0.39 0.30 16 31 H 0.07 0.67 6.43 -51.93 -0.33 0.34 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 1.08 6.39 -51.93 -0.33 0.75 16 34 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.53 6.43 -51.93 -0.33 0.20 16 37 H 0.06 0.62 6.43 -51.93 -0.33 0.28 16 38 H 0.40 6.87 6.83 -40.82 -0.28 6.59 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 1.41 7.49 -51.93 -0.39 1.02 16 41 H 0.38 9.10 7.28 -40.82 -0.30 8.80 16 42 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.05 0.82 7.85 -51.93 -0.41 0.42 16 44 H 0.08 1.55 7.12 -51.93 -0.37 1.18 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.07 1.07 7.44 -51.93 -0.39 0.69 16 50 H 0.06 0.86 7.55 -51.93 -0.39 0.46 16 LS Contribution 375.45 15.07 5.66 5.66 Total: -1.00 -28.63 375.45 -8.40 -37.02 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -9.00 Total: 14.87 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -0.33 Total: -8.77 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.21 Total: -53.98 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.63 -8.40 -37.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753670725.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.737 kcal (2) G-P(sol) polarization free energy of solvation -28.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds