Wall clock time and date at job start Fri Apr 10 2020 20:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47410 * 2 1 4 4 C 1.53003 * 109.46977 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46744 * 179.97438 * 4 3 2 6 6 C 1.53008 * 109.46561 * 184.75270 * 5 4 3 7 7 H 1.08999 * 109.47004 * 306.80749 * 6 5 4 8 8 C 1.53003 * 109.46617 * 186.81131 * 6 5 4 9 9 C 1.53000 * 109.47413 * 64.94930 * 8 6 5 10 10 C 1.50693 * 109.47182 * 66.81104 * 6 5 4 11 11 O 1.21287 * 120.00413 * 359.97438 * 10 6 5 12 12 N 1.34776 * 120.00173 * 179.97438 * 10 6 5 13 13 C 1.46502 * 120.00325 * 179.97438 * 12 10 6 14 14 H 1.09002 * 112.84573 * 23.80662 * 13 12 10 15 15 C 1.53781 * 113.61358 * 155.00225 * 13 12 10 16 16 C 1.53791 * 87.07897 * 89.11868 * 15 13 12 17 17 H 1.09000 * 113.61191 * 270.79694 * 16 15 13 18 18 N 1.46493 * 113.61286 * 139.98005 * 16 15 13 19 19 C 1.36938 * 120.00095 * 154.99947 * 18 16 15 20 20 H 1.08006 * 119.99849 * 359.72467 * 19 18 16 21 21 C 1.38812 * 120.00134 * 179.97438 * 19 18 16 22 22 N 1.31616 * 120.00330 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99811 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47279 * 90.00132 * 23 21 19 25 25 H 1.48506 * 109.47216 * 210.00081 * 23 21 19 26 26 H 1.48501 * 109.47450 * 329.99889 * 23 21 19 27 27 C 1.53779 * 113.61307 * 252.50316 * 13 12 10 28 28 H 1.09008 * 109.46752 * 299.99924 * 1 2 3 29 29 H 1.08997 * 109.46902 * 59.99369 * 1 2 3 30 30 H 1.08991 * 109.47284 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46752 * 240.00076 * 2 1 3 32 32 H 1.09003 * 109.47466 * 120.00263 * 2 1 3 33 33 H 1.08998 * 109.47217 * 60.00322 * 3 2 1 34 34 H 1.09007 * 109.46885 * 300.00041 * 3 2 1 35 35 H 1.08998 * 109.47149 * 59.99956 * 4 3 2 36 36 H 1.08994 * 109.47183 * 299.99924 * 4 3 2 37 37 H 1.09001 * 109.47101 * 64.75774 * 5 4 3 38 38 H 1.08993 * 109.47550 * 304.75046 * 5 4 3 39 39 H 1.08999 * 109.47006 * 184.95411 * 8 6 5 40 40 H 1.09005 * 109.47111 * 304.95067 * 8 6 5 41 41 H 1.08997 * 109.47203 * 294.79874 * 9 8 6 42 42 H 1.08997 * 109.46611 * 54.79410 * 9 8 6 43 43 H 1.08994 * 109.47224 * 174.79311 * 9 8 6 44 44 H 0.97001 * 119.99869 * 0.02562 * 12 10 6 45 45 H 1.09000 * 113.61805 * 334.57437 * 15 13 12 46 46 H 1.08997 * 113.69031 * 203.67499 * 15 13 12 47 47 H 0.96999 * 120.00589 * 335.00346 * 18 16 15 48 48 H 0.97000 * 120.00131 * 179.97438 * 22 21 19 49 49 H 1.08998 * 113.61034 * 156.33708 * 27 13 12 50 50 H 1.08995 * 113.61811 * 25.42964 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 6 4.0801 2.8848 -0.0013 6 6 5.6055 2.8863 -0.1215 7 1 6.0316 2.2487 0.6531 8 6 6.1290 4.3140 0.0481 9 6 5.8333 4.8004 1.4683 10 6 6.0030 2.3632 -1.4776 11 8 5.1504 2.0223 -2.2700 12 7 7.3061 2.2742 -1.8102 13 6 7.6926 1.7652 -3.1284 14 1 6.9059 1.8807 -3.8740 15 6 9.0683 2.2634 -3.6020 16 6 9.6685 1.0374 -2.8936 17 1 9.9225 1.2176 -1.8491 18 7 10.7555 0.4012 -3.6418 19 6 11.7049 -0.3312 -2.9804 20 1 11.6548 -0.4361 -1.9066 21 6 12.7346 -0.9344 -3.6893 22 7 12.7989 -0.8021 -4.9973 23 14 14.0301 -1.9329 -2.7869 24 1 13.5926 -3.3495 -2.7016 25 1 15.3169 -1.8558 -3.5241 26 1 14.2106 -1.3873 -1.4176 27 6 8.3044 0.3548 -3.0890 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9330 0.9286 -0.8908 36 1 3.9338 0.9284 0.8891 37 1 3.7885 3.3738 0.9282 38 1 3.6487 3.4224 -0.8456 39 1 7.2051 4.3293 -0.1245 40 1 5.6364 4.9693 -0.6703 41 1 4.7550 4.8731 1.6103 42 1 6.2476 4.0941 2.1877 43 1 6.2865 5.7801 1.6185 44 1 7.9881 2.5465 -1.1764 45 1 9.3654 3.2133 -3.1576 46 1 9.1914 2.2457 -4.6848 47 1 10.8029 0.4988 -4.6057 48 1 13.5186 -1.2233 -5.4926 49 1 8.2175 -0.1852 -4.0318 50 1 7.9849 -0.2359 -2.2305 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752687607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:29:50 Heat of formation + Delta-G solvation = -48.668231 kcal Electronic energy + Delta-G solvation = -24148.715478 eV Core-core repulsion = 20789.233331 eV Total energy + Delta-G solvation = -3359.482147 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 296.221 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.26690 -38.34594 -36.43016 -35.19921 -34.01803 -32.56187 -31.65675 -29.91387 -28.42950 -25.66014 -25.11444 -24.39728 -22.53725 -22.25193 -21.64436 -21.07371 -19.84248 -18.91915 -17.47890 -17.07235 -15.87509 -15.68511 -15.28393 -14.94897 -14.66371 -14.45961 -14.12658 -13.91194 -13.78699 -13.58584 -13.19523 -12.99337 -12.64836 -12.59516 -12.25483 -12.06608 -11.88482 -11.84609 -11.75276 -11.63605 -11.44006 -11.17180 -10.94367 -10.91270 -10.86731 -10.78136 -10.56326 -10.39730 -10.29021 -10.22823 -9.91685 -9.55697 -9.49960 -8.91218 -8.72877 -6.99189 -5.80997 -3.10006 2.72520 3.28114 3.40953 3.46018 3.47689 4.39770 4.56134 4.56502 4.66282 4.80257 4.82579 4.95309 5.03147 5.07759 5.19014 5.20831 5.23560 5.28219 5.33424 5.44824 5.50202 5.53011 5.55376 5.58232 5.65860 5.70820 5.78830 5.82682 5.86689 5.87026 5.93473 5.95497 6.02535 6.02601 6.11064 6.16777 6.25634 6.29263 6.32786 6.41201 6.55132 6.64397 6.71277 7.09551 7.65677 7.66686 8.36554 8.37484 9.48595 10.06206 10.40530 11.41322 Molecular weight = 296.22amu Principal moments of inertia in cm(-1) A = 0.016684 B = 0.002722 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.803040 B =10284.967039 C =10992.905071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.115 4.115 4 C -0.127 4.127 5 C -0.098 4.098 6 C -0.109 4.109 7 H 0.096 0.904 8 C -0.116 4.116 9 C -0.152 4.152 10 C 0.517 3.483 11 O -0.539 6.539 12 N -0.707 5.707 13 C 0.116 3.884 14 H 0.094 0.906 15 C -0.160 4.160 16 C 0.167 3.833 17 H 0.073 0.927 18 N -0.712 5.712 19 C -0.245 4.245 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.176 4.176 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.399 0.601 45 H 0.063 0.937 46 H 0.090 0.910 47 H 0.386 0.614 48 H 0.256 0.744 49 H 0.085 0.915 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.616 9.966 12.612 25.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.152 4.152 4 C -0.165 4.165 5 C -0.136 4.136 6 C -0.131 4.131 7 H 0.114 0.886 8 C -0.154 4.154 9 C -0.209 4.209 10 C 0.303 3.697 11 O -0.416 6.416 12 N -0.358 5.358 13 C 0.010 3.990 14 H 0.112 0.888 15 C -0.200 4.200 16 C 0.055 3.945 17 H 0.091 0.909 18 N -0.350 5.350 19 C -0.376 4.376 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.208 1.208 27 C -0.218 4.218 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.233 0.767 45 H 0.082 0.918 46 H 0.109 0.891 47 H 0.220 0.780 48 H 0.066 0.934 49 H 0.103 0.897 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.060 9.623 12.137 25.344 hybrid contribution 1.175 -0.519 0.403 1.347 sum -18.884 9.103 12.540 24.428 Atomic orbital electron populations 1.21777 0.96182 1.01391 1.01595 1.21541 0.95536 0.97270 1.02048 1.21553 0.95676 0.96466 1.01538 1.21730 0.95252 0.96725 1.02745 1.21447 0.92275 0.97798 1.02064 1.21466 0.98454 0.97942 0.95214 0.88609 1.21514 1.01253 0.94447 0.98202 1.21818 1.01895 1.01162 0.96060 1.20606 0.82371 0.77644 0.89069 1.90661 1.49821 1.49119 1.52006 1.45769 1.07248 1.65525 1.17218 1.21799 0.96540 0.96242 0.84409 0.88760 1.23854 0.94473 0.99623 1.02002 1.21611 0.87013 0.90645 0.95246 0.90932 1.42402 1.26896 1.59047 1.06680 1.19287 1.02782 1.23745 0.91779 0.91148 1.24772 0.99240 1.01270 0.95609 1.69657 1.34341 1.48664 1.05296 0.86190 0.81237 0.80180 0.78559 1.21666 1.21740 1.20750 1.24291 1.00005 0.95400 1.02099 0.92987 0.92806 0.92964 0.91905 0.92278 0.92611 0.92066 0.90086 0.92798 0.91453 0.91225 0.91368 0.91357 0.92319 0.92442 0.92475 0.76674 0.91848 0.89126 0.78017 0.93420 0.89687 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.13 -1.13 5.93 -26.73 -0.16 -1.29 16 3 C -0.11 -1.05 5.21 -26.73 -0.14 -1.19 16 4 C -0.13 -1.31 5.01 -26.73 -0.13 -1.44 16 5 C -0.10 -0.92 4.22 -26.72 -0.11 -1.03 16 6 C -0.11 -1.03 2.18 -91.77 -0.20 -1.23 16 7 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 8 C -0.12 -0.91 5.35 -26.73 -0.14 -1.05 16 9 C -0.15 -0.97 9.55 37.16 0.35 -0.62 16 10 C 0.52 6.72 6.84 -10.99 -0.08 6.65 16 11 O -0.54 -8.88 13.70 5.55 0.08 -8.81 16 12 N -0.71 -8.98 5.12 -53.02 -0.27 -9.25 16 13 C 0.12 1.75 4.32 -67.12 -0.29 1.46 16 14 H 0.09 1.52 7.46 -51.93 -0.39 1.13 16 15 C -0.16 -2.53 7.58 -25.91 -0.20 -2.72 16 16 C 0.17 3.19 4.36 -67.12 -0.29 2.90 16 17 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 18 N -0.71 -17.58 5.40 -52.63 -0.28 -17.87 16 19 C -0.24 -6.71 9.97 -15.06 -0.15 -6.87 16 20 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -27.96 13.06 55.49 0.72 -27.23 16 23 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 C -0.18 -3.11 7.68 -25.92 -0.20 -3.31 16 28 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 1.07 6.05 -51.93 -0.31 0.75 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.51 6.38 -51.93 -0.33 0.18 16 38 H 0.07 0.75 7.89 -51.93 -0.41 0.34 16 39 H 0.07 0.51 7.43 -51.93 -0.39 0.12 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.36 6.67 -51.93 -0.35 0.01 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.40 4.25 8.06 -40.82 -0.33 3.93 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.09 1.48 8.12 -51.93 -0.42 1.06 16 47 H 0.39 10.13 7.92 -40.82 -0.32 9.80 16 48 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 49 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 50 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 394.12 15.07 5.94 5.94 Total: -1.00 -31.01 394.12 -9.86 -40.87 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -9.56 Total: 10.19 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -1.46 Total: -11.01 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.17 Total: -54.35 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.08 Total: -8.81 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.01 -9.86 -40.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752687607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.795 kcal (2) G-P(sol) polarization free energy of solvation -31.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds