Wall clock time and date at job start Fri Apr 10 2020 20:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47037 * 2 1 4 4 H 1.09011 * 109.47062 * 183.87771 * 3 2 1 5 5 C 1.50700 * 109.47186 * 303.87941 * 3 2 1 6 6 H 1.08001 * 119.99922 * 115.40556 * 5 3 2 7 7 C 1.37876 * 119.99884 * 295.40222 * 5 3 2 8 8 N 1.31509 * 120.00229 * 354.13180 * 7 5 3 9 9 Si 1.86802 * 119.99730 * 174.13280 * 7 5 3 10 10 H 1.48497 * 109.47312 * 269.99840 * 9 7 5 11 11 H 1.48505 * 109.46865 * 30.00299 * 9 7 5 12 12 H 1.48502 * 109.46815 * 149.99856 * 9 7 5 13 13 N 1.46907 * 109.47395 * 63.88397 * 3 2 1 14 14 C 1.46890 * 111.00088 * 80.81230 * 13 3 2 15 15 C 1.50701 * 109.47258 * 184.69831 * 14 13 3 16 16 O 1.21282 * 119.99893 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00450 * 180.02562 * 15 14 13 18 18 C 1.46494 * 120.00031 * 179.97438 * 17 15 14 19 19 C 1.53005 * 109.46866 * 179.97438 * 18 17 15 20 20 C 1.53010 * 109.46863 * 179.97438 * 19 18 17 21 21 C 1.52996 * 109.46975 * 294.99720 * 20 19 18 22 22 C 1.52998 * 109.47068 * 180.02562 * 21 20 19 23 23 C 1.53001 * 109.47279 * 60.00070 * 22 21 20 24 24 C 1.53002 * 109.46848 * 300.00217 * 23 22 21 25 25 C 1.52998 * 109.47358 * 59.99831 * 24 23 22 26 26 H 1.09000 * 109.47218 * 64.86711 * 1 2 3 27 27 H 1.09005 * 109.47326 * 184.86501 * 1 2 3 28 28 H 1.09002 * 109.47519 * 304.86677 * 1 2 3 29 29 H 1.08997 * 109.47277 * 239.99815 * 2 1 3 30 30 H 1.09006 * 109.46703 * 119.99692 * 2 1 3 31 31 H 0.97006 * 120.00301 * 354.17789 * 8 7 5 32 32 H 1.00904 * 110.99322 * 316.86325 * 13 3 2 33 33 H 1.08999 * 109.47513 * 304.69979 * 14 13 3 34 34 H 1.09007 * 109.47346 * 64.69723 * 14 13 3 35 35 H 0.96997 * 119.99969 * 359.97438 * 17 15 14 36 36 H 1.08999 * 109.47220 * 299.99561 * 18 17 15 37 37 H 1.08997 * 109.47375 * 59.99560 * 18 17 15 38 38 H 1.08997 * 109.47205 * 299.99245 * 19 18 17 39 39 H 1.08996 * 109.47250 * 60.00391 * 19 18 17 40 40 H 1.08994 * 109.47303 * 54.99959 * 20 19 18 41 41 H 1.09004 * 109.47376 * 300.00241 * 21 20 19 42 42 H 1.08999 * 109.46998 * 60.00260 * 21 20 19 43 43 H 1.09004 * 109.46991 * 300.00197 * 22 21 20 44 44 H 1.09007 * 109.47375 * 180.02562 * 22 21 20 45 45 H 1.08998 * 109.46971 * 180.02562 * 23 22 21 46 46 H 1.08994 * 109.47043 * 60.00067 * 23 22 21 47 47 H 1.09004 * 109.47252 * 299.99768 * 24 23 22 48 48 H 1.08999 * 109.46833 * 179.97438 * 24 23 22 49 49 H 1.09000 * 109.46969 * 179.97438 * 25 24 23 50 50 H 1.09004 * 109.46991 * 59.99777 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1278 1.4433 -0.0695 5 6 1.4606 2.1801 -1.1796 6 1 0.7881 3.0100 -1.0202 7 6 1.7892 1.7955 -2.4622 8 7 2.6952 0.8624 -2.6571 9 14 0.9474 2.5997 -3.9230 10 1 -0.2758 1.8339 -4.2728 11 1 0.5754 3.9944 -3.5737 12 1 1.8736 2.6104 -5.0837 13 7 1.6283 2.1074 1.2436 14 6 2.5278 1.7566 2.3507 15 6 2.0099 2.3621 3.6299 16 8 0.9919 3.0214 3.6201 17 7 2.6784 2.1719 4.7846 18 6 2.1751 2.7610 6.0279 19 6 3.1119 2.3955 7.1811 20 6 2.5867 3.0113 8.4796 21 6 2.6435 4.5370 8.3799 22 6 2.1189 5.1527 9.6786 23 6 2.9844 4.6856 10.8506 24 6 2.9276 3.1599 10.9502 25 6 3.4522 2.5441 9.6516 26 1 -0.3633 0.4365 -0.9304 27 1 -0.3634 -1.0240 0.0872 28 1 -0.3634 0.5875 0.8432 29 1 1.8933 -0.5138 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 3.1927 0.5047 -1.9051 32 1 0.6706 1.8864 1.4719 33 1 2.5717 0.6724 2.4537 34 1 3.5261 2.1426 2.1441 35 1 3.4927 1.6449 4.7924 36 1 2.1314 3.8452 5.9246 37 1 1.1770 2.3752 6.2348 38 1 3.1553 1.3113 7.2844 39 1 4.1102 2.7811 6.9744 40 1 1.5558 2.6958 8.6404 41 1 3.6744 4.8525 8.2192 42 1 2.0273 4.8697 7.5447 43 1 1.0880 4.8373 9.8398 44 1 2.1590 6.2397 9.6075 45 1 2.6103 5.1240 11.7758 46 1 4.0152 5.0011 10.6894 47 1 1.8967 2.8444 11.1114 48 1 3.5445 2.8271 11.7849 49 1 3.4121 1.4572 9.7227 50 1 4.4830 2.8596 9.4904 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578546607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:27:43 Heat of formation + Delta-G solvation = -80.275708 kcal Electronic energy + Delta-G solvation = -23958.552886 eV Core-core repulsion = 20597.700136 eV Total energy + Delta-G solvation = -3360.852750 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 296.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.67674 -38.96916 -36.61284 -35.30090 -32.86158 -32.54595 -31.11910 -30.69288 -28.63278 -26.77941 -24.70155 -23.60877 -23.40773 -22.66385 -21.19736 -20.33963 -19.95782 -19.47610 -17.32239 -16.29233 -16.11557 -15.79070 -15.57119 -14.99395 -14.56058 -14.36723 -14.28831 -13.95917 -13.81393 -13.59742 -13.19996 -13.06166 -12.89212 -12.46670 -12.33692 -12.26032 -11.98727 -11.82747 -11.63710 -11.52291 -11.45618 -11.16055 -11.08992 -10.79670 -10.73762 -10.44788 -10.29881 -10.28805 -10.07118 -10.05298 -9.84306 -9.51920 -8.98887 -8.56446 -8.26097 -7.32347 -6.27122 -3.96152 2.93129 3.24531 3.49053 3.52815 3.68934 4.29054 4.30864 4.40078 4.57861 4.67679 4.75132 4.95189 5.00516 5.06616 5.12062 5.16307 5.17925 5.27051 5.28403 5.33027 5.41868 5.42751 5.57318 5.64728 5.69736 5.76545 5.78808 5.80435 5.82558 5.86847 5.88568 5.94439 6.05744 6.11570 6.15493 6.16082 6.33581 6.50647 6.69398 6.95026 7.03791 7.27287 7.30780 7.57391 7.91798 8.27938 8.41744 8.52613 8.69369 8.95478 9.71157 11.08720 Molecular weight = 296.22amu Principal moments of inertia in cm(-1) A = 0.036892 B = 0.002203 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.794895 B =12708.292505 C =12986.006296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.153 4.153 3 C 0.204 3.796 4 H 0.027 0.973 5 C -0.568 4.568 6 H 0.057 0.943 7 C 0.018 3.982 8 N -0.918 5.918 9 Si 1.068 2.932 10 H -0.289 1.289 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.661 5.661 14 C 0.040 3.960 15 C 0.512 3.488 16 O -0.526 6.526 17 N -0.741 5.741 18 C 0.119 3.881 19 C -0.127 4.127 20 C -0.083 4.083 21 C -0.119 4.119 22 C -0.121 4.121 23 C -0.120 4.120 24 C -0.120 4.120 25 C -0.114 4.114 26 H 0.068 0.932 27 H 0.026 0.974 28 H 0.037 0.963 29 H 0.070 0.930 30 H 0.019 0.981 31 H 0.267 0.733 32 H 0.339 0.661 33 H 0.048 0.952 34 H 0.092 0.908 35 H 0.398 0.602 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.060 0.940 49 H 0.061 0.939 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.048 1.873 26.355 26.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.193 4.193 3 C 0.096 3.904 4 H 0.044 0.956 5 C -0.606 4.606 6 H 0.075 0.925 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.897 3.103 10 H -0.216 1.216 11 H -0.214 1.214 12 H -0.213 1.213 13 N -0.294 5.294 14 C -0.093 4.093 15 C 0.298 3.702 16 O -0.401 6.401 17 N -0.395 5.395 18 C -0.005 4.005 19 C -0.165 4.165 20 C -0.102 4.102 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.158 4.158 24 C -0.157 4.157 25 C -0.151 4.151 26 H 0.087 0.913 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.160 0.840 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.232 0.768 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.080 0.920 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.487 2.926 24.536 24.835 hybrid contribution 0.363 -1.226 1.947 2.329 sum 2.850 1.700 26.483 26.691 Atomic orbital electron populations 1.21554 0.96710 0.98288 1.02129 1.22239 0.96271 1.01317 0.99482 1.19378 0.95450 0.88451 0.87164 0.95555 1.21861 1.30326 1.17613 0.90848 0.92473 1.25710 0.96698 0.95965 1.00151 1.70774 1.22538 1.26911 1.35283 0.83560 0.75744 0.75597 0.75430 1.21587 1.21431 1.21296 1.60632 1.05266 1.62246 1.01302 1.21852 0.99625 0.97862 0.90001 1.21014 0.83935 0.80269 0.84943 1.90680 1.24415 1.38825 1.86152 1.46061 1.29513 1.56022 1.07883 1.21349 0.97491 0.98776 0.82851 1.21852 0.99449 1.01208 0.93948 1.21086 1.00012 0.95445 0.93654 1.21679 1.01656 0.94654 0.97689 1.21538 0.99488 1.00053 0.94725 1.21544 1.00235 0.95758 0.98235 1.21533 1.01310 0.95538 0.97363 1.21576 0.99376 1.00001 0.94158 0.91270 0.95443 0.94446 0.91099 0.96259 0.92123 0.84005 0.93476 0.88952 0.76850 0.91448 0.91913 0.91278 0.91221 0.90884 0.91896 0.91422 0.92000 0.92044 0.92261 0.92083 0.92021 0.92163 0.92000 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.38 37.15 0.35 -2.42 16 2 C -0.15 -3.49 5.46 -26.74 -0.15 -3.64 16 3 C 0.20 5.04 1.95 -68.86 -0.13 4.90 16 4 H 0.03 0.70 7.31 -51.92 -0.38 0.32 16 5 C -0.57 -15.82 7.43 -34.44 -0.26 -16.07 16 6 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 7 C 0.02 0.50 5.27 -17.82 -0.09 0.41 16 8 N -0.92 -26.95 12.87 55.43 0.71 -26.23 16 9 Si 1.07 25.45 29.91 -169.99 -5.08 20.37 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 N -0.66 -14.80 5.93 -109.22 -0.65 -15.45 16 14 C 0.04 0.70 5.99 -4.98 -0.03 0.67 16 15 C 0.51 8.59 7.86 -10.99 -0.09 8.51 16 16 O -0.53 -10.97 16.10 5.56 0.09 -10.88 16 17 N -0.74 -8.90 5.56 -60.30 -0.33 -9.24 16 18 C 0.12 1.27 5.43 -4.04 -0.02 1.24 16 19 C -0.13 -0.94 4.80 -26.72 -0.13 -1.07 16 20 C -0.08 -0.58 2.19 -90.62 -0.20 -0.78 16 21 C -0.12 -0.88 4.96 -26.73 -0.13 -1.01 16 22 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 23 C -0.12 -0.73 5.92 -26.73 -0.16 -0.89 16 24 C -0.12 -0.71 5.92 -26.73 -0.16 -0.87 16 25 C -0.11 -0.70 5.20 -26.73 -0.14 -0.84 16 26 H 0.07 1.62 7.30 -51.93 -0.38 1.24 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.76 6.24 -51.93 -0.32 0.44 16 29 H 0.07 1.78 6.27 -51.93 -0.33 1.45 16 30 H 0.02 0.39 7.04 -51.93 -0.37 0.02 16 31 H 0.27 7.77 6.05 -40.82 -0.25 7.53 16 32 H 0.34 7.70 6.02 -39.29 -0.24 7.47 16 33 H 0.05 0.77 7.00 -51.93 -0.36 0.41 16 34 H 0.09 1.55 8.14 -51.92 -0.42 1.12 16 35 H 0.40 3.63 8.47 -40.82 -0.35 3.28 16 36 H 0.07 0.80 6.56 -51.93 -0.34 0.45 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.57 6.56 -51.93 -0.34 0.22 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 380.14 15.07 5.73 5.73 Total: -1.00 -31.80 380.14 -10.22 -42.03 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -9.20 Total: 6.51 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -1.49 Total: -12.82 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.27 Total: -50.93 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.08 Total: 20.37 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.80 -10.22 -42.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578546607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.250 kcal (2) G-P(sol) polarization free energy of solvation -31.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds