Wall clock time and date at job start Fri Apr 10 2020 20:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.58458 * 2 1 4 4 C 1.53193 * 109.58589 * 239.71913 * 2 1 3 5 5 C 1.53045 * 109.31135 * 185.43240 * 4 2 1 6 6 C 1.53040 * 109.53664 * 61.36626 * 5 4 2 7 7 C 1.53189 * 109.31437 * 298.63357 * 6 5 4 8 8 N 1.46926 * 108.89610 * 54.56328 * 7 6 5 9 9 C 1.34779 * 120.63555 * 126.45851 * 8 7 6 10 10 O 1.21581 * 120.00278 * 198.61461 * 9 8 7 11 11 N 1.34774 * 119.99283 * 18.61363 * 9 8 7 12 12 C 1.46506 * 120.00399 * 325.58626 * 11 9 8 13 13 C 1.50702 * 109.46821 * 88.06870 * 12 11 9 14 14 H 1.07996 * 120.00089 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99654 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99903 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99951 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47066 * 89.99968 * 17 15 13 19 19 H 1.48493 * 109.47193 * 210.00454 * 17 15 13 20 20 H 1.48503 * 109.46857 * 330.00196 * 17 15 13 21 21 C 1.46505 * 120.00027 * 145.58996 * 11 9 8 22 22 C 1.52996 * 109.47434 * 95.80280 * 21 11 9 23 23 C 1.52996 * 109.46876 * 64.48487 * 22 21 11 24 24 C 1.52998 * 109.47104 * 184.48681 * 22 21 11 25 25 C 1.53006 * 109.46958 * 304.48899 * 22 21 11 26 26 H 1.09002 * 109.47109 * 179.87211 * 1 2 3 27 27 H 1.09005 * 109.47228 * 299.86548 * 1 2 3 28 28 H 1.08998 * 109.47643 * 59.86785 * 1 2 3 29 29 H 1.08997 * 109.49481 * 65.48115 * 4 2 1 30 30 H 1.09000 * 109.52216 * 305.39853 * 4 2 1 31 31 H 1.08992 * 109.46149 * 301.34607 * 5 4 2 32 32 H 1.09003 * 109.44371 * 181.37758 * 5 4 2 33 33 H 1.08997 * 109.49797 * 178.67823 * 6 5 4 34 34 H 1.09000 * 109.49718 * 58.58551 * 6 5 4 35 35 H 1.08997 * 109.58845 * 174.42043 * 7 6 5 36 36 H 1.09001 * 109.58941 * 294.70680 * 7 6 5 37 37 H 1.08998 * 109.47172 * 208.06809 * 12 11 9 38 38 H 1.08995 * 109.46813 * 328.07249 * 12 11 9 39 39 H 0.97002 * 119.99589 * 179.97438 * 16 15 13 40 40 H 1.08997 * 109.47164 * 215.80767 * 21 11 9 41 41 H 1.09007 * 109.46601 * 335.80510 * 21 11 9 42 42 H 1.08999 * 109.47119 * 60.00195 * 23 22 21 43 43 H 1.09000 * 109.47095 * 179.97438 * 23 22 21 44 44 H 1.08997 * 109.47503 * 299.99904 * 23 22 21 45 45 H 1.08999 * 109.46947 * 60.00652 * 24 22 21 46 46 H 1.09003 * 109.46529 * 179.97438 * 24 22 21 47 47 H 1.08999 * 109.47133 * 299.99953 * 24 22 21 48 48 H 1.09004 * 109.47132 * 65.03611 * 25 22 21 49 49 H 1.09005 * 109.47119 * 185.03545 * 25 22 21 50 50 H 1.09000 * 109.47185 * 305.03586 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2464 5 6 3.5678 -0.8432 -1.1730 6 6 3.9604 -1.6607 0.0598 7 6 3.4686 -0.9436 1.3210 8 7 2.0257 -0.6962 1.1956 9 6 1.1730 -1.1033 2.1567 10 8 -0.0134 -1.2078 1.9124 11 7 1.6357 -1.3946 3.3886 12 6 2.9601 -1.9999 3.5495 13 6 4.0005 -0.9138 3.6451 14 1 3.7047 0.1235 3.5917 15 6 5.3298 -1.2445 3.8017 16 7 5.6899 -2.5077 3.8672 17 14 6.6195 0.1017 3.9194 18 1 6.8045 0.4871 5.3416 19 1 7.9062 -0.3960 3.3700 20 1 6.1731 1.2844 3.1402 21 6 0.8141 -1.1061 4.5668 22 6 0.0468 -2.3654 4.9744 23 6 1.0369 -3.4464 5.4125 24 6 -0.8948 -2.0357 6.1344 25 6 -0.7690 -2.8732 3.7837 26 1 -0.3633 -1.0277 -0.0023 27 1 -0.3634 0.5118 0.8912 28 1 -0.3634 0.5159 -0.8887 29 1 1.7637 -0.1654 -2.1371 30 1 1.6050 -1.7246 -1.2927 31 1 4.0045 0.1529 -1.1022 32 1 3.9378 -1.3391 -2.0704 33 1 5.0449 -1.7625 0.0986 34 1 3.5037 -2.6488 0.0016 35 1 3.6576 -1.5684 2.1938 36 1 3.9938 0.0052 1.4301 37 1 2.9771 -2.6003 4.4591 38 1 3.1760 -2.6353 2.6906 39 1 6.6252 -2.7403 3.9771 40 1 1.4562 -0.7898 5.3888 41 1 0.1074 -0.3104 4.3308 42 1 1.6181 -3.0846 6.2606 43 1 0.4902 -4.3434 5.7033 44 1 1.7077 -3.6812 4.5861 45 1 -1.6002 -1.2657 5.8222 46 1 -1.4418 -2.9329 6.4244 47 1 -0.3136 -1.6739 6.9826 48 1 -0.0934 -3.1921 2.9900 49 1 -1.3841 -3.7165 4.0980 50 1 -1.4106 -2.0729 3.4151 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594448310.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:30:00 Heat of formation + Delta-G solvation = 20.997833 kcal Electronic energy + Delta-G solvation = -27480.743728 eV Core-core repulsion = 24124.282529 eV Total energy + Delta-G solvation = -3356.461200 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 296.221 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.28575 -37.71817 -36.22995 -35.21979 -32.48598 -32.00093 -31.27033 -28.41201 -26.88361 -26.68385 -26.56277 -25.32043 -23.47313 -22.67134 -21.47771 -20.18858 -18.79145 -17.98287 -16.71805 -15.92974 -15.64546 -15.05624 -14.54811 -14.47353 -14.22122 -14.01219 -13.92071 -13.44226 -13.29057 -13.01972 -12.77754 -12.42717 -12.10638 -12.03987 -11.87600 -11.76507 -11.58534 -11.48758 -11.11892 -11.02419 -10.97718 -10.91462 -10.73368 -10.54160 -10.45872 -10.41891 -10.21348 -10.10769 -10.01687 -9.97952 -9.70621 -8.81139 -8.56733 -8.11899 -7.72900 -7.27716 -6.25011 -4.22759 3.17814 3.26404 3.29015 3.55437 3.94347 4.24667 4.79392 5.02121 5.23708 5.29785 5.33833 5.37443 5.40856 5.52695 5.72414 5.84138 5.89471 5.95653 6.01046 6.07415 6.13322 6.17444 6.24517 6.28013 6.29199 6.33850 6.35882 6.37586 6.44394 6.60415 6.61569 6.62233 6.67674 6.68738 6.71998 6.73047 6.93369 6.95017 7.08471 7.12475 7.15100 7.49145 7.61430 7.64788 7.82480 7.88110 8.11913 8.64791 8.94768 9.29414 9.52838 10.77479 Molecular weight = 296.22amu Principal moments of inertia in cm(-1) A = 0.010600 B = 0.008835 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.796079 B = 3168.341481 C = 5159.424501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.157 3.843 3 H 0.056 0.944 4 C -0.126 4.126 5 C -0.120 4.120 6 C -0.134 4.134 7 C 0.029 3.971 8 N -0.617 5.617 9 C 0.717 3.283 10 O -0.596 6.596 11 N -0.634 5.634 12 C 0.224 3.776 13 C -0.529 4.529 14 H 0.067 0.933 15 C 0.060 3.940 16 N -0.885 5.885 17 Si 0.891 3.109 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.160 3.840 22 C -0.087 4.087 23 C -0.142 4.142 24 C -0.136 4.136 25 C -0.117 4.117 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.030 0.970 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.219 0.781 36 H 0.048 0.952 37 H 0.053 0.947 38 H 0.040 0.960 39 H 0.268 0.732 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.041 0.959 44 H 0.070 0.930 45 H 0.050 0.950 46 H 0.049 0.951 47 H 0.051 0.949 48 H 0.057 0.943 49 H 0.028 0.972 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.118 1.462 -2.769 6.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.052 3.948 3 H 0.074 0.926 4 C -0.165 4.165 5 C -0.157 4.157 6 C -0.173 4.173 7 C -0.090 4.090 8 N -0.354 5.354 9 C 0.421 3.579 10 O -0.476 6.476 11 N -0.370 5.370 12 C 0.104 3.896 13 C -0.568 4.568 14 H 0.085 0.915 15 C -0.144 4.144 16 N -0.523 5.523 17 Si 0.719 3.281 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.197 1.197 21 C 0.036 3.964 22 C -0.089 4.089 23 C -0.199 4.199 24 C -0.194 4.194 25 C -0.175 4.175 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.233 0.767 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.076 0.924 49 H 0.047 0.953 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.580 1.292 -2.888 7.301 hybrid contribution 1.163 0.827 -0.164 1.436 sum -5.417 2.119 -3.052 6.569 Atomic orbital electron populations 1.22147 0.93383 1.03661 0.99688 1.20953 0.94960 0.94277 0.84590 0.92558 1.21960 0.96262 1.00979 0.97304 1.21550 0.95477 1.00319 0.98375 1.21992 1.00638 0.98947 0.95679 1.25021 0.77705 1.03643 1.02629 1.47501 1.08011 1.60012 1.19860 1.15926 0.84128 0.77143 0.80662 1.90806 1.16445 1.59345 1.81023 1.47024 1.19621 1.67041 1.03305 1.19760 0.78071 0.93420 0.98310 1.21421 0.91550 0.94076 1.49733 0.91497 1.24889 0.98431 0.95628 0.95426 1.69905 1.17918 1.15969 1.48478 0.86565 0.80941 0.82048 0.78550 1.20485 1.21019 1.19689 1.21115 0.92822 0.94987 0.87500 1.21020 0.95626 0.96794 0.95460 1.22031 0.98800 0.97328 1.01778 1.21794 0.98909 1.00883 0.97773 1.21778 0.99253 0.99611 0.96829 0.90451 0.91891 0.95084 0.92088 0.91926 0.92538 0.93055 0.91724 0.92895 0.76665 0.93344 0.92967 0.94238 0.92257 0.91189 0.92184 0.92979 0.94022 0.91137 0.93077 0.93152 0.92996 0.92393 0.95318 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 7.62 37.16 0.28 -1.93 16 2 C 0.16 2.71 3.48 -67.58 -0.24 2.48 16 3 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.13 -1.94 5.37 -26.61 -0.14 -2.08 16 5 C -0.12 -1.86 5.88 -26.69 -0.16 -2.02 16 6 C -0.13 -2.46 6.08 -26.61 -0.16 -2.62 16 7 C 0.03 0.60 3.92 -3.71 -0.01 0.59 16 8 N -0.62 -12.32 2.98 -170.88 -0.51 -12.83 16 9 C 0.72 15.02 6.85 -86.92 -0.60 14.43 16 10 O -0.60 -12.63 8.81 5.29 0.05 -12.58 16 11 N -0.63 -12.96 1.95 -225.59 -0.44 -13.40 16 12 C 0.22 5.01 3.70 -5.19 -0.02 4.99 16 13 C -0.53 -12.54 5.35 -34.44 -0.18 -12.73 16 14 H 0.07 1.65 7.51 -52.49 -0.39 1.26 16 15 C 0.06 1.46 5.26 -17.82 -0.09 1.36 16 16 N -0.89 -22.52 13.29 55.43 0.74 -21.78 16 17 Si 0.89 19.48 29.54 -169.99 -5.02 14.46 16 18 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 C 0.16 2.91 4.63 -4.04 -0.02 2.89 16 22 C -0.09 -1.42 0.85 -154.51 -0.13 -1.55 16 23 C -0.14 -2.36 7.33 37.16 0.27 -2.08 16 24 C -0.14 -1.84 8.47 37.16 0.31 -1.52 16 25 C -0.12 -2.03 6.84 37.16 0.25 -1.78 16 26 H 0.08 1.44 6.66 -51.93 -0.35 1.09 16 27 H 0.06 1.16 6.90 -51.93 -0.36 0.80 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.22 4.91 1.01 -145.45 -0.15 4.76 16 36 H 0.05 1.06 7.52 -51.93 -0.39 0.67 16 37 H 0.05 1.21 5.39 -51.93 -0.28 0.93 16 38 H 0.04 0.97 6.22 -51.93 -0.32 0.64 16 39 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 40 H 0.07 1.27 8.11 -51.93 -0.42 0.85 16 41 H 0.06 1.09 7.87 -51.93 -0.41 0.68 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 1.32 5.48 -51.93 -0.28 1.04 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.06 1.14 6.52 -51.93 -0.34 0.81 16 49 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.06 1.13 7.01 -51.93 -0.36 0.77 16 LS Contribution 358.04 15.07 5.40 5.40 Total: -1.00 -24.48 358.04 -9.53 -34.02 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -9.11 Total: 8.30 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -0.63 Total: -1.58 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: -0.21 Total: -48.01 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.05 Total: -12.58 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -24.48 -9.53 -34.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594448310.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.014 kcal (2) G-P(sol) polarization free energy of solvation -24.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds