Wall clock time and date at job start Fri Apr 10 2020 20:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46898 * 109.46912 * 2 1 4 4 C 1.46854 * 110.99635 * 293.94813 * 3 2 1 5 5 C 1.53044 * 109.52041 * 185.84307 * 4 3 2 6 6 C 1.53122 * 109.27646 * 300.82504 * 5 4 3 7 7 H 1.09002 * 109.52147 * 297.68437 * 6 5 4 8 8 N 1.46903 * 109.51782 * 177.56373 * 6 5 4 9 9 C 1.46903 * 110.99973 * 306.03567 * 8 6 5 10 10 C 1.46890 * 111.00262 * 69.99682 * 8 6 5 11 11 C 1.53004 * 109.47388 * 155.19816 * 10 8 6 12 12 C 1.53001 * 109.46635 * 306.40796 * 11 10 8 13 13 C 1.53003 * 109.47079 * 66.40253 * 11 10 8 14 14 C 1.52996 * 109.47484 * 186.40510 * 11 10 8 15 15 C 1.50702 * 109.46891 * 179.97438 * 14 11 10 16 16 H 1.07996 * 120.00400 * 0.02562 * 15 14 11 17 17 C 1.37880 * 119.99574 * 179.97438 * 15 14 11 18 18 N 1.31513 * 119.99801 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00307 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47435 * 89.99787 * 19 17 15 21 21 H 1.48496 * 109.47549 * 209.99805 * 19 17 15 22 22 H 1.48497 * 109.47204 * 329.99815 * 19 17 15 23 23 C 1.53115 * 109.16274 * 57.65438 * 6 5 4 24 24 C 1.46841 * 111.00530 * 58.16065 * 3 2 1 25 25 H 1.09003 * 109.46345 * 294.17719 * 24 3 2 26 26 C 1.53003 * 109.46242 * 54.15580 * 24 3 2 27 27 H 1.09000 * 109.47231 * 300.00378 * 1 2 3 28 28 H 1.09000 * 109.46835 * 60.00657 * 1 2 3 29 29 H 1.08999 * 109.46862 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47231 * 239.99622 * 2 1 3 31 31 H 1.09000 * 109.46835 * 119.99343 * 2 1 3 32 32 H 1.08996 * 109.45806 * 65.82963 * 4 3 2 33 33 H 1.08998 * 109.46383 * 305.85530 * 4 3 2 34 34 H 1.08994 * 109.50266 * 180.88324 * 5 4 3 35 35 H 1.08997 * 109.50274 * 60.76172 * 5 4 3 36 36 H 1.08989 * 109.47294 * 203.07554 * 9 8 6 37 37 H 1.08998 * 109.47034 * 323.08148 * 9 8 6 38 38 H 1.09002 * 109.46195 * 83.07736 * 9 8 6 39 39 H 1.09001 * 109.47178 * 35.19870 * 10 8 6 40 40 H 1.08995 * 109.47101 * 275.19635 * 10 8 6 41 41 H 1.09003 * 109.47171 * 179.97438 * 12 11 10 42 42 H 1.09001 * 109.47459 * 299.99498 * 12 11 10 43 43 H 1.08992 * 109.47632 * 59.99761 * 12 11 10 44 44 H 1.09003 * 109.46667 * 277.87929 * 13 11 10 45 45 H 1.09000 * 109.46894 * 37.87708 * 13 11 10 46 46 H 1.08991 * 109.47193 * 157.87670 * 13 11 10 47 47 H 1.08994 * 109.46838 * 299.99953 * 14 11 10 48 48 H 1.09000 * 109.47192 * 59.99805 * 14 11 10 49 49 H 0.96996 * 120.00215 * 180.02562 * 18 17 15 50 50 H 1.08998 * 109.50257 * 62.28623 * 23 6 5 51 51 H 1.09000 * 109.49749 * 182.40509 * 23 6 5 52 52 H 1.08998 * 109.47310 * 60.00016 * 26 24 3 53 53 H 1.08994 * 109.47107 * 180.02562 * 26 24 3 54 54 H 1.09002 * 109.46884 * 300.00205 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6704 2.0666 -1.2530 5 6 2.3185 3.4527 -1.2790 6 6 1.8235 4.2649 -0.0791 7 1 0.7448 4.4032 -0.1529 8 7 2.4867 5.5756 -0.0662 9 6 3.9476 5.4268 -0.1088 10 6 2.0108 6.4173 -1.1720 11 6 2.2031 7.8915 -0.8102 12 6 1.5395 8.1762 0.5386 13 6 3.6982 8.2034 -0.7190 14 6 1.5640 8.7689 -1.8884 15 6 1.7529 10.2208 -1.5317 16 1 2.2768 10.4908 -0.6267 17 6 1.2578 11.2045 -2.3612 18 7 1.4222 12.4716 -2.0497 19 14 0.3522 10.7376 -3.9269 20 1 -1.0977 10.5988 -3.6375 21 1 0.5538 11.7953 -4.9495 22 1 0.8806 9.4476 -4.4383 23 6 2.1568 3.5100 1.2107 24 6 1.5133 2.1223 1.1646 25 1 0.4311 2.2262 1.0862 26 6 1.8607 1.3568 2.4430 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 0.5875 2.1707 -1.3200 33 1 2.0318 1.4807 -2.0981 34 1 2.0463 3.9645 -2.2021 35 1 3.4022 3.3487 -1.2259 36 1 4.4160 6.3209 0.3025 37 1 4.2417 4.5585 0.4808 38 1 4.2688 5.2906 -1.1414 39 1 0.9531 6.2215 -1.3485 40 1 2.5782 6.1875 -2.0738 41 1 1.6769 9.2263 0.7967 42 1 0.4744 7.9541 0.4737 43 1 1.9948 7.5512 1.3068 44 1 4.0731 7.9022 0.2592 45 1 4.2315 7.6565 -1.4966 46 1 3.8551 9.2734 -0.8546 47 1 2.0367 8.5659 -2.8493 48 1 0.4988 8.5467 -1.9534 49 1 1.0736 13.1637 -2.6330 50 1 3.2379 3.4069 1.3030 51 1 1.7689 4.0627 2.0663 52 1 2.9428 1.2525 2.5214 53 1 1.4845 1.9038 3.3075 54 1 1.4018 0.3686 2.4108 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353769310.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:30:49 Heat of formation + Delta-G solvation = -1.980413 kcal Electronic energy + Delta-G solvation = -26143.919018 eV Core-core repulsion = 22922.294502 eV Total energy + Delta-G solvation = -3221.624517 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 296.252 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.20687 -38.18756 -35.67602 -32.93627 -32.51850 -31.81511 -29.13730 -27.67928 -27.50149 -27.27427 -25.99778 -24.68455 -23.40913 -22.69141 -22.01904 -20.01264 -19.17584 -17.79637 -16.71079 -16.24851 -15.89074 -15.46262 -15.16559 -14.92935 -14.26340 -14.17431 -13.89236 -13.52025 -13.27491 -13.08221 -12.88780 -12.74623 -12.62514 -12.41327 -12.23406 -12.18372 -12.01551 -11.94930 -11.72363 -11.52679 -11.33583 -11.01400 -10.97656 -10.82795 -10.71632 -10.67467 -10.55549 -10.39351 -10.26495 -10.16308 -9.71940 -9.59326 -9.13424 -8.87466 -8.47145 -8.46456 -7.89209 -5.96900 -3.92374 3.33992 3.41556 3.45159 3.66811 4.12116 4.51024 4.63596 4.66125 4.77756 4.78972 4.98091 5.06194 5.10703 5.16016 5.23245 5.33230 5.36235 5.41314 5.46032 5.48201 5.55524 5.60730 5.65902 5.69611 5.74589 5.75951 5.81985 5.82831 5.92685 5.96789 6.00817 6.02188 6.13629 6.16267 6.26995 6.32495 6.40235 6.56027 6.70672 6.79534 6.88692 6.90357 6.94239 7.16443 7.25293 7.29122 7.36250 7.45345 7.47106 7.59337 7.89827 8.64026 9.09746 9.66526 11.16325 Molecular weight = 296.25amu Principal moments of inertia in cm(-1) A = 0.025732 B = 0.003299 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.858915 B = 8486.225783 C = 8951.379982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.047 3.953 3 N -0.532 5.532 4 C 0.060 3.940 5 C -0.149 4.149 6 C 0.084 3.916 7 H 0.074 0.926 8 N -0.525 5.525 9 C 0.013 3.987 10 C 0.065 3.935 11 C -0.043 4.043 12 C -0.114 4.114 13 C -0.135 4.135 14 C -0.004 4.004 15 C -0.505 4.505 16 H 0.078 0.922 17 C 0.064 3.936 18 N -0.907 5.907 19 Si 0.875 3.125 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.267 1.267 23 C -0.101 4.101 24 C 0.080 3.920 25 H 0.043 0.957 26 C -0.147 4.147 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.025 0.975 39 H 0.061 0.939 40 H 0.031 0.969 41 H 0.057 0.943 42 H 0.034 0.966 43 H 0.047 0.953 44 H 0.044 0.956 45 H 0.033 0.967 46 H 0.071 0.929 47 H 0.011 0.989 48 H 0.008 0.992 49 H 0.261 0.739 50 H 0.073 0.927 51 H 0.073 0.927 52 H 0.063 0.937 53 H 0.060 0.940 54 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.037 -25.338 5.473 25.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.081 4.081 3 N -0.256 5.256 4 C -0.069 4.069 5 C -0.188 4.188 6 C -0.025 4.025 7 H 0.092 0.908 8 N -0.247 5.247 9 C -0.134 4.134 10 C -0.063 4.063 11 C -0.044 4.044 12 C -0.171 4.171 13 C -0.192 4.192 14 C -0.042 4.042 15 C -0.542 4.542 16 H 0.096 0.904 17 C -0.136 4.136 18 N -0.546 5.546 19 Si 0.703 3.297 20 H -0.205 1.205 21 H -0.216 1.216 22 H -0.192 1.192 23 C -0.139 4.139 24 C -0.028 4.028 25 H 0.061 0.939 26 C -0.204 4.204 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.076 0.924 42 H 0.053 0.947 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.090 0.910 47 H 0.029 0.971 48 H 0.026 0.974 49 H 0.071 0.929 50 H 0.091 0.909 51 H 0.092 0.908 52 H 0.082 0.918 53 H 0.079 0.921 54 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.399 -24.910 5.889 25.635 hybrid contribution -1.335 -0.523 -1.938 2.411 sum 0.064 -25.433 3.951 25.738 Atomic orbital electron populations 1.22447 0.98372 1.02185 1.02241 1.22189 0.92824 0.90381 1.02661 1.62187 1.59418 1.01790 1.02240 1.22011 0.97938 0.95128 0.91793 1.22328 1.01840 0.95043 0.99627 1.21825 0.98565 0.88385 0.93775 0.90787 1.62160 1.05343 1.11654 1.45515 1.22794 0.88521 1.02387 0.99722 1.22415 0.99003 0.94375 0.90460 1.20352 0.95724 0.91159 0.97122 1.21591 0.98618 1.01092 0.95845 1.22062 0.95260 1.02939 0.98924 1.19633 0.94881 0.95877 0.93832 1.21147 1.35796 0.88406 1.08898 0.90356 1.25016 0.95962 0.94943 0.97702 1.69909 1.47145 0.99358 1.38216 0.86855 0.80500 0.78330 0.84013 1.20499 1.21612 1.19206 1.21694 1.01608 0.92979 0.97666 1.21624 0.97054 0.93799 0.90367 0.93920 1.21903 1.02429 0.99816 0.96290 0.92235 0.92565 0.92278 0.91036 0.90350 0.94789 0.91135 0.91647 0.90811 0.90257 0.92198 0.95681 0.92086 0.95106 0.92419 0.94655 0.93404 0.93706 0.94793 0.90972 0.97078 0.97374 0.92936 0.90894 0.90788 0.91815 0.92121 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.41 9.11 37.16 0.34 -1.07 16 2 C 0.05 0.37 5.51 -3.82 -0.02 0.35 16 3 N -0.53 -4.99 4.69 -226.68 -1.06 -6.06 16 4 C 0.06 0.59 5.05 -3.83 -0.02 0.57 16 5 C -0.15 -1.67 4.81 -26.65 -0.13 -1.80 16 6 C 0.08 1.01 2.21 -67.59 -0.15 0.86 16 7 H 0.07 0.96 7.80 -51.93 -0.41 0.56 16 8 N -0.53 -7.38 3.57 -234.74 -0.84 -8.22 16 9 C 0.01 0.18 7.13 60.07 0.43 0.60 16 10 C 0.06 1.07 3.39 -3.83 -0.01 1.06 16 11 C -0.04 -0.84 0.61 -154.51 -0.09 -0.93 16 12 C -0.11 -2.23 7.88 37.16 0.29 -1.93 16 13 C -0.13 -2.54 7.15 37.16 0.27 -2.28 16 14 C 0.00 -0.10 3.11 -27.88 -0.09 -0.19 16 15 C -0.50 -14.03 7.89 -34.44 -0.27 -14.30 16 16 H 0.08 2.33 6.15 -52.49 -0.32 2.01 16 17 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 18 N -0.91 -27.98 13.96 55.43 0.77 -27.21 16 19 Si 0.88 21.95 27.47 -169.99 -4.67 17.29 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 23 C -0.10 -1.08 4.67 -26.65 -0.12 -1.20 16 24 C 0.08 0.75 1.84 -67.73 -0.12 0.62 16 25 H 0.04 0.42 6.61 -51.93 -0.34 0.08 16 26 C -0.15 -1.16 8.68 37.16 0.32 -0.83 16 27 H 0.06 0.46 6.24 -51.93 -0.32 0.14 16 28 H 0.06 0.45 6.68 -51.93 -0.35 0.10 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.53 8.06 -51.93 -0.42 0.11 16 31 H 0.08 0.56 6.32 -51.93 -0.33 0.23 16 32 H 0.03 0.34 6.75 -51.93 -0.35 -0.01 16 33 H 0.07 0.65 8.06 -51.93 -0.42 0.24 16 34 H 0.06 0.78 7.43 -51.93 -0.39 0.40 16 35 H 0.07 0.87 6.66 -51.93 -0.35 0.52 16 36 H 0.08 1.09 5.11 -51.94 -0.27 0.83 16 37 H 0.06 0.70 5.70 -51.93 -0.30 0.40 16 38 H 0.02 0.33 7.08 -51.93 -0.37 -0.04 16 39 H 0.06 1.02 7.64 -51.93 -0.40 0.62 16 40 H 0.03 0.51 7.19 -51.93 -0.37 0.14 16 41 H 0.06 1.25 6.62 -51.93 -0.34 0.91 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.85 7.42 -51.93 -0.39 0.46 16 44 H 0.04 0.76 5.91 -51.93 -0.31 0.46 16 45 H 0.03 0.59 7.42 -51.93 -0.39 0.21 16 46 H 0.07 1.57 6.23 -51.93 -0.32 1.25 16 47 H 0.01 0.27 7.20 -51.93 -0.37 -0.11 16 48 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 49 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 50 H 0.07 0.81 6.15 -51.93 -0.32 0.49 16 51 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 52 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 53 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 54 H 0.05 0.39 6.07 -51.93 -0.32 0.08 16 LS Contribution 374.06 15.07 5.64 5.64 Total: -1.00 -29.14 374.06 -9.76 -38.90 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -10.12 Total: -1.61 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 0.52 Total: -18.73 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: -1.13 Total: -41.49 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.14 -9.76 -38.90 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353769310.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.922 kcal (2) G-P(sol) polarization free energy of solvation -29.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds