Wall clock time and date at job start Fri Apr 10 2020 20:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47047 * 2 1 4 4 C 1.52994 * 109.47417 * 120.00652 * 2 1 3 5 5 N 1.46898 * 109.47484 * 174.99603 * 4 2 1 6 6 C 1.46852 * 110.99638 * 45.78944 * 5 4 2 7 7 C 1.53043 * 109.52101 * 185.84134 * 6 5 4 8 8 C 1.53119 * 109.27494 * 300.81759 * 7 6 5 9 9 C 1.53003 * 109.57262 * 177.59069 * 8 7 6 10 10 C 1.53116 * 109.16168 * 57.66017 * 8 7 6 11 11 C 1.46850 * 111.00136 * 169.99924 * 5 4 2 12 12 N 1.46902 * 109.46555 * 240.00539 * 2 1 3 13 13 C 1.46898 * 111.00157 * 85.00220 * 12 2 1 14 14 C 1.52997 * 109.47123 * 179.97438 * 13 12 2 15 15 C 1.53006 * 109.47164 * 299.99884 * 14 13 12 16 16 C 1.52999 * 109.47592 * 59.99590 * 14 13 12 17 17 C 1.52997 * 109.47232 * 179.97438 * 14 13 12 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 14 13 19 19 H 1.07998 * 120.00129 * 359.97438 * 18 17 14 20 20 C 1.37880 * 119.99861 * 180.02562 * 18 17 14 21 21 N 1.31520 * 119.99850 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00180 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47117 * 90.00278 * 22 20 18 24 24 H 1.48501 * 109.47010 * 210.00349 * 22 20 18 25 25 H 1.48500 * 109.47001 * 330.00215 * 22 20 18 26 26 H 1.08994 * 109.47047 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46780 * 299.99630 * 1 2 3 28 28 H 1.08998 * 109.46853 * 59.99382 * 1 2 3 29 29 H 1.09003 * 109.47035 * 294.99612 * 4 2 1 30 30 H 1.09002 * 109.47383 * 54.99191 * 4 2 1 31 31 H 1.09000 * 109.46139 * 305.85058 * 6 5 4 32 32 H 1.09002 * 109.46285 * 65.82815 * 6 5 4 33 33 H 1.08993 * 109.49954 * 180.88009 * 7 6 5 34 34 H 1.08999 * 109.50009 * 60.75823 * 7 6 5 35 35 H 1.08996 * 109.52726 * 297.75029 * 8 7 6 36 36 H 1.08998 * 109.47118 * 300.29100 * 9 8 7 37 37 H 1.09001 * 109.46708 * 60.28746 * 9 8 7 38 38 H 1.08997 * 109.47495 * 180.28924 * 9 8 7 39 39 H 1.09004 * 109.50703 * 182.40241 * 10 8 7 40 40 H 1.09001 * 109.50832 * 62.28223 * 10 8 7 41 41 H 1.09001 * 109.46040 * 294.17381 * 11 5 4 42 42 H 1.08995 * 109.46293 * 54.15429 * 11 5 4 43 43 H 1.00909 * 110.99603 * 208.95300 * 12 2 1 44 44 H 1.09001 * 109.47062 * 59.99599 * 13 12 2 45 45 H 1.09002 * 109.46774 * 299.99237 * 13 12 2 46 46 H 1.09001 * 109.46801 * 180.02562 * 15 14 13 47 47 H 1.09001 * 109.46998 * 299.99705 * 15 14 13 48 48 H 1.09000 * 109.47050 * 59.99996 * 15 14 13 49 49 H 1.09000 * 109.47160 * 300.00333 * 16 14 13 50 50 H 1.09002 * 109.46719 * 60.00054 * 16 14 13 51 51 H 1.08993 * 109.47839 * 179.97438 * 16 14 13 52 52 H 1.09002 * 109.47153 * 299.99992 * 17 14 13 53 53 H 1.09001 * 109.47289 * 60.00075 * 17 14 13 54 54 H 0.97002 * 119.99994 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.5041 -0.8268 1.1902 6 6 4.1082 0.4512 0.7925 7 6 5.6153 0.2668 0.6006 8 6 6.2352 -0.2263 1.9110 9 6 7.7321 -0.4704 1.7099 10 6 5.5552 -1.5332 2.3281 11 6 4.0498 -1.2967 2.4700 12 7 2.0196 -0.6924 -1.1996 13 6 2.0824 0.2227 -2.3469 14 6 2.5960 -0.5326 -3.5743 15 6 3.9934 -1.0849 -3.2854 16 6 1.6471 -1.6890 -3.8956 17 6 2.6608 0.4203 -4.7694 18 6 3.1674 -0.3236 -5.9782 19 1 3.4184 -1.3712 -5.9016 20 6 3.3113 0.3336 -7.1818 21 7 3.7538 -0.3155 -8.2366 22 14 2.8778 2.1457 -7.3142 23 1 4.0773 2.9654 -7.0069 24 1 2.4143 2.4443 -8.6931 25 1 1.7972 2.4681 -6.3481 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.7518 -0.1585 2.1369 30 1 1.6054 -1.7199 1.2950 31 1 3.6616 0.7885 -0.1428 32 1 3.9294 1.1947 1.5693 33 1 6.0656 1.2190 0.3206 34 1 5.7949 -0.4666 -0.1856 35 1 6.0896 0.5242 2.6879 36 1 7.8768 -1.2193 0.9313 37 1 8.2153 0.4604 1.4130 38 1 8.1707 -0.8262 2.6422 39 1 5.9626 -1.8670 3.2825 40 1 5.7339 -2.2949 1.5692 41 1 3.8713 -0.5449 3.2389 42 1 3.5609 -2.2288 2.7530 43 1 2.9173 -1.1205 -1.0289 44 1 2.7588 1.0463 -2.1182 45 1 1.0870 0.6164 -2.5525 46 1 4.3594 -1.6227 -4.1600 47 1 4.6695 -0.2611 -3.0566 48 1 3.9468 -1.7640 -2.4340 49 1 1.6005 -2.3681 -3.0442 50 1 0.6516 -1.2956 -4.1014 51 1 2.0127 -2.2269 -4.7702 52 1 1.6652 0.8134 -4.9751 53 1 3.3367 1.2444 -4.5409 54 1 3.8548 0.1467 -9.0834 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594979310.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:29:16 Heat of formation + Delta-G solvation = -24.670393 kcal Electronic energy + Delta-G solvation = -26106.880866 eV Core-core repulsion = 22884.272438 eV Total energy + Delta-G solvation = -3222.608428 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 296.252 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.78459 -37.78787 -35.99616 -33.76757 -32.25087 -31.01513 -30.17645 -28.43276 -27.44658 -26.28693 -25.54116 -24.54594 -23.48504 -22.20442 -21.80192 -20.17205 -19.59484 -17.77860 -16.73535 -16.25356 -15.84586 -15.40365 -14.92498 -14.70902 -14.26800 -14.20449 -13.95001 -13.73625 -13.40732 -13.28813 -12.74363 -12.62492 -12.50062 -12.39835 -12.23580 -12.04684 -11.97478 -11.81923 -11.67024 -11.39128 -11.36223 -11.10793 -10.90652 -10.86901 -10.78576 -10.68948 -10.44099 -10.41741 -10.24355 -10.20086 -9.73998 -9.60534 -9.19554 -8.83173 -8.46157 -8.45145 -7.98332 -5.95520 -3.91033 3.34749 3.42465 3.46491 3.69066 4.44161 4.52231 4.54303 4.60163 4.64611 4.79569 5.06760 5.15844 5.18948 5.20384 5.27768 5.37354 5.37816 5.42620 5.47286 5.53012 5.54145 5.64523 5.68877 5.71260 5.75513 5.80392 5.82007 5.89155 5.96553 5.98401 6.01047 6.03988 6.05139 6.27020 6.28776 6.30980 6.37032 6.54835 6.70619 6.79429 6.89047 6.91748 6.93779 7.17846 7.23416 7.27591 7.41826 7.47103 7.55237 7.91107 7.92404 8.65413 9.11177 9.67964 11.17696 Molecular weight = 296.25amu Principal moments of inertia in cm(-1) A = 0.015718 B = 0.003958 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.949911 B = 7072.882824 C = 8033.690151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.080 3.920 3 H 0.038 0.962 4 C 0.055 3.945 5 N -0.536 5.536 6 C 0.046 3.954 7 C -0.113 4.113 8 C -0.093 4.093 9 C -0.146 4.146 10 C -0.112 4.112 11 C 0.059 3.941 12 N -0.678 5.678 13 C 0.068 3.932 14 C -0.047 4.047 15 C -0.128 4.128 16 C -0.116 4.116 17 C -0.004 4.004 18 C -0.504 4.504 19 H 0.078 0.922 20 C 0.064 3.936 21 N -0.906 5.906 22 Si 0.875 3.125 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.267 1.267 26 H 0.062 0.938 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.034 0.966 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.028 0.972 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.029 0.971 42 H 0.074 0.926 43 H 0.356 0.644 44 H 0.017 0.983 45 H 0.062 0.938 46 H 0.067 0.933 47 H 0.037 0.963 48 H 0.038 0.962 49 H 0.045 0.955 50 H 0.037 0.963 51 H 0.058 0.942 52 H 0.013 0.987 53 H 0.006 0.994 54 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.788 0.247 24.197 24.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.030 4.030 3 H 0.056 0.944 4 C -0.073 4.073 5 N -0.261 5.261 6 C -0.081 4.081 7 C -0.151 4.151 8 C -0.111 4.111 9 C -0.204 4.204 10 C -0.149 4.149 11 C -0.069 4.069 12 N -0.314 5.314 13 C -0.061 4.061 14 C -0.047 4.047 15 C -0.186 4.186 16 C -0.173 4.173 17 C -0.042 4.042 18 C -0.542 4.542 19 H 0.096 0.904 20 C -0.136 4.136 21 N -0.546 5.546 22 Si 0.703 3.297 23 H -0.206 1.206 24 H -0.216 1.216 25 H -0.192 1.192 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.046 0.954 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.047 0.953 42 H 0.092 0.908 43 H 0.179 0.821 44 H 0.035 0.965 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.056 0.944 48 H 0.057 0.943 49 H 0.064 0.936 50 H 0.056 0.944 51 H 0.077 0.923 52 H 0.032 0.968 53 H 0.025 0.975 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.344 -0.332 23.498 23.503 hybrid contribution 0.342 2.323 0.602 2.424 sum 0.686 1.991 24.100 24.192 Atomic orbital electron populations 1.21755 0.94638 1.02335 1.00908 1.21579 0.95750 0.95597 0.90110 0.94413 1.22340 0.87130 1.01375 0.96489 1.61920 1.04900 1.28757 1.30474 1.22259 0.95446 0.89879 1.00549 1.21663 0.93945 1.01699 0.97767 1.21169 0.95156 0.97259 0.97555 1.21811 0.95212 1.01776 1.01578 1.21652 0.93889 0.97857 1.01534 1.22046 0.95684 0.99702 0.89457 1.60568 1.35182 1.32658 1.02947 1.22148 0.99599 0.93278 0.91028 1.20388 0.94809 0.96249 0.93298 1.21758 0.96300 0.99744 1.00776 1.21594 0.97840 0.97478 1.00438 1.19627 0.96177 0.94662 0.93723 1.21154 1.42459 0.98325 0.92290 0.90412 1.25014 0.94990 0.97670 0.95923 1.69915 1.47402 1.36414 1.00901 0.86860 0.79204 0.86566 0.77109 1.20570 1.21602 1.19162 0.91892 0.93386 0.92394 0.94809 0.89789 0.90123 0.95353 0.91646 0.90557 0.91963 0.92326 0.92768 0.92943 0.91803 0.90758 0.95290 0.90763 0.82105 0.96451 0.91969 0.91402 0.94360 0.94299 0.93581 0.94394 0.92294 0.96849 0.97547 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.42 37.16 0.35 -1.19 16 2 C 0.08 0.96 1.96 -67.71 -0.13 0.82 16 3 H 0.04 0.48 6.20 -51.93 -0.32 0.15 16 4 C 0.05 0.57 4.91 -3.83 -0.02 0.55 16 5 N -0.54 -5.67 3.79 -234.66 -0.89 -6.56 16 6 C 0.05 0.51 4.54 -3.83 -0.02 0.49 16 7 C -0.11 -1.16 5.38 -26.65 -0.14 -1.31 16 8 C -0.09 -0.82 2.79 -90.50 -0.25 -1.07 16 9 C -0.15 -1.19 9.20 37.16 0.34 -0.85 16 10 C -0.11 -0.95 5.38 -26.65 -0.14 -1.09 16 11 C 0.06 0.53 5.42 -3.83 -0.02 0.51 16 12 N -0.68 -9.69 5.18 -106.73 -0.55 -10.24 16 13 C 0.07 1.14 4.28 -3.83 -0.02 1.13 16 14 C -0.05 -0.92 0.60 -154.51 -0.09 -1.02 16 15 C -0.13 -2.43 7.89 37.16 0.29 -2.13 16 16 C -0.12 -2.29 8.06 37.16 0.30 -1.99 16 17 C 0.00 -0.10 3.11 -27.88 -0.09 -0.18 16 18 C -0.50 -14.07 8.20 -34.44 -0.28 -14.35 16 19 H 0.08 2.32 5.92 -52.49 -0.31 2.01 16 20 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 21 N -0.91 -28.02 13.96 55.43 0.77 -27.25 16 22 Si 0.87 22.02 27.47 -169.99 -4.67 17.35 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.71 7.45 -51.93 -0.39 0.32 16 29 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.01 4.57 -51.93 -0.24 0.77 16 32 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 42 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 43 H 0.36 5.22 4.95 -39.29 -0.19 5.02 16 44 H 0.02 0.29 7.36 -51.93 -0.38 -0.09 16 45 H 0.06 1.07 7.44 -51.93 -0.39 0.68 16 46 H 0.07 1.44 6.62 -51.93 -0.34 1.10 16 47 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.04 0.65 6.57 -51.93 -0.34 0.31 16 49 H 0.05 0.83 7.60 -51.93 -0.39 0.43 16 50 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 51 H 0.06 1.29 6.62 -51.93 -0.34 0.94 16 52 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 53 H 0.01 0.15 7.57 -51.93 -0.39 -0.24 16 54 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 390.48 15.07 5.88 5.88 Total: -1.00 -29.02 390.48 -10.23 -39.25 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -10.76 Total: 1.47 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -0.02 Total: -19.91 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -0.67 Total: -44.05 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.02 -10.23 -39.25 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594979310.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.583 kcal (2) G-P(sol) polarization free energy of solvation -29.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds