Wall clock time and date at job start Fri Apr 10 2020 20:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 N 1.46499 * 109.46846 * 240.00528 * 2 1 3 5 5 C 1.34774 * 120.00436 * 85.00229 * 4 2 1 6 6 O 1.21558 * 119.99826 * 359.97438 * 5 4 2 7 7 C 1.47785 * 120.00590 * 179.97438 * 5 4 2 8 8 C 1.39617 * 120.12663 * 359.72220 * 7 5 4 9 9 C 1.37894 * 119.86821 * 179.79167 * 8 7 5 10 10 C 1.38518 * 120.12835 * 0.48425 * 9 8 7 11 11 Cl 1.73596 * 119.86723 * 179.72145 * 10 9 8 12 12 C 1.38510 * 120.26474 * 359.74474 * 10 9 8 13 13 C 1.37898 * 120.13113 * 0.02562 * 12 10 9 14 14 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 15 15 O 1.21213 * 119.99758 * 119.99680 * 14 2 1 16 16 O 1.34307 * 119.99699 * 300.27419 * 14 2 1 17 17 C 1.34923 * 117.00000 * 179.72351 * 16 14 2 18 18 H 1.08007 * 119.99533 * 0.02562 * 17 16 14 19 19 C 1.38749 * 120.00389 * 179.97438 * 17 16 14 20 20 N 1.31439 * 120.00041 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99953 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47417 * 89.99398 * 21 19 17 23 23 H 1.48498 * 109.47202 * 209.99921 * 21 19 17 24 24 H 1.48508 * 109.47195 * 329.99599 * 21 19 17 25 25 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 27 27 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 28 28 H 0.97002 * 120.00224 * 264.99837 * 4 2 1 29 29 H 1.08007 * 120.06933 * 0.02562 * 8 7 5 30 30 H 1.08000 * 119.94108 * 180.23247 * 9 8 7 31 31 H 1.08000 * 119.93831 * 179.97438 * 12 10 9 32 32 H 1.08000 * 120.06698 * 179.97438 * 13 12 10 33 33 H 0.97005 * 119.99848 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6905 -1.1962 5 6 2.1470 -0.0181 -2.3572 6 8 1.8575 1.1612 -2.4118 7 6 2.6401 -0.7145 -3.5638 8 6 2.9788 -2.0676 -3.5027 9 6 3.4343 -2.7132 -4.6329 10 6 3.5655 -2.0194 -5.8246 11 17 4.1464 -2.8371 -7.2415 12 6 3.2355 -0.6758 -5.8902 13 6 2.7745 -0.0207 -4.7678 14 6 2.0323 -0.7105 1.2304 15 8 2.7291 -1.6961 1.1190 16 8 1.7033 -0.2550 2.4502 17 6 2.1812 -0.9404 3.5096 18 1 2.7988 -1.8127 3.3542 19 6 1.8802 -0.5241 4.7985 20 7 2.3462 -1.1916 5.8304 21 14 0.8125 0.9850 5.0671 22 1 -0.6139 0.5771 5.1320 23 1 1.1977 1.6433 6.3413 24 1 1.0051 1.9344 3.9415 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 2.2490 -1.6317 -1.1528 29 1 2.8808 -2.6086 -2.5731 30 1 3.6931 -3.7607 -4.5879 31 1 3.3403 -0.1399 -6.8220 32 1 2.5179 1.0271 -4.8200 33 1 2.1354 -0.9008 6.7315 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005220249.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:29:00 Heat of formation + Delta-G solvation = -115.361598 kcal Electronic energy + Delta-G solvation = -20637.438140 eV Core-core repulsion = 17074.722076 eV Total energy + Delta-G solvation = -3562.716064 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 297.060 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.80942 -41.01820 -39.57116 -37.74795 -37.45904 -36.15436 -34.54901 -33.04517 -32.13681 -31.06429 -27.90034 -25.97230 -24.60739 -23.80736 -21.98512 -21.43965 -20.24922 -19.72234 -18.32170 -17.69411 -17.59827 -16.94305 -16.66317 -16.25597 -16.07905 -15.93700 -15.51993 -14.92767 -14.59001 -14.55759 -14.50532 -14.31774 -13.91127 -13.33656 -13.29931 -13.20670 -12.74946 -12.61932 -12.51309 -12.43385 -12.26900 -11.88214 -11.87836 -11.26199 -11.20106 -10.85900 -10.45583 -10.19407 -9.86375 -8.57345 -6.44893 -0.46731 0.18674 1.00036 1.18852 1.33807 1.46300 1.51929 1.59513 1.69391 2.26407 2.40848 2.64436 2.89054 3.47825 3.65689 3.79307 3.95173 3.99839 4.11500 4.12889 4.22697 4.48952 4.64264 4.74439 4.85983 4.98289 5.06799 5.09703 5.14269 5.19884 5.42875 5.57087 5.84571 6.29022 6.41448 6.77576 6.94255 7.47425 8.54836 Molecular weight = 297.06amu Principal moments of inertia in cm(-1) A = 0.035972 B = 0.002894 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.197083 B = 9672.260872 C =10254.805405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.169 3.831 3 H 0.121 0.879 4 N -0.703 5.703 5 C 0.565 3.435 6 O -0.563 6.563 7 C -0.143 4.143 8 C -0.071 4.071 9 C -0.117 4.117 10 C -0.015 4.015 11 Cl -0.057 7.057 12 C -0.115 4.115 13 C -0.049 4.049 14 C 0.408 3.592 15 O -0.563 6.563 16 O -0.245 6.245 17 C -0.408 4.408 18 H 0.063 0.937 19 C 0.020 3.980 20 N -0.913 5.913 21 Si 0.978 3.022 22 H -0.256 1.256 23 H -0.268 1.268 24 H -0.249 1.249 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.414 0.586 29 H 0.146 0.854 30 H 0.160 0.840 31 H 0.163 0.837 32 H 0.149 0.851 33 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.866 0.828 -24.146 24.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.063 3.937 3 H 0.139 0.861 4 N -0.358 5.358 5 C 0.354 3.646 6 O -0.443 6.443 7 C -0.146 4.146 8 C -0.090 4.090 9 C -0.135 4.135 10 C -0.042 4.042 11 Cl -0.028 7.028 12 C -0.133 4.133 13 C -0.069 4.069 14 C 0.255 3.745 15 O -0.459 6.459 16 O -0.153 6.153 17 C -0.484 4.484 18 H 0.081 0.919 19 C -0.181 4.181 20 N -0.552 5.552 21 Si 0.797 3.203 22 H -0.180 1.180 23 H -0.192 1.192 24 H -0.172 1.172 25 H 0.087 0.913 26 H 0.102 0.898 27 H 0.106 0.894 28 H 0.253 0.747 29 H 0.164 0.836 30 H 0.177 0.823 31 H 0.181 0.819 32 H 0.167 0.833 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.820 1.294 -24.059 24.162 hybrid contribution 0.306 -0.551 0.664 0.916 sum -1.514 0.743 -23.395 23.455 Atomic orbital electron populations 1.22085 0.90199 1.03870 1.04623 1.20189 0.97283 0.96756 0.79508 0.86114 1.45727 1.66873 1.15147 1.08027 1.18480 0.76876 0.86105 0.83116 1.90760 1.51660 1.16415 1.85433 1.19914 1.05733 0.95163 0.93797 1.21497 0.95285 0.92832 0.99415 1.21239 1.00026 1.01853 0.90389 1.21377 1.00026 0.93670 0.89103 1.98397 1.86759 1.78869 1.38808 1.21261 0.99420 0.92549 1.00084 1.21338 0.94415 1.00952 0.90149 1.23917 0.80340 0.84451 0.85827 1.90573 1.39423 1.28595 1.87286 1.83497 1.65084 1.52704 1.14045 1.20328 1.33304 1.11384 0.83347 0.91942 1.25528 0.97978 1.01888 0.92703 1.69692 1.44462 1.41416 0.99623 0.85152 0.78648 0.77637 0.78859 1.18037 1.19239 1.17233 0.91277 0.89776 0.89426 0.74733 0.83589 0.82279 0.81917 0.83320 0.89972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.15 9.41 71.98 0.68 -3.47 16 2 C 0.17 5.64 3.09 44.24 0.14 5.78 16 3 H 0.12 4.01 7.58 -2.39 -0.02 3.99 16 4 N -0.70 -20.45 4.90 -449.04 -2.20 -22.65 16 5 C 0.57 15.72 7.74 86.77 0.67 16.39 16 6 O -0.56 -18.41 16.01 -3.90 -0.06 -18.48 16 7 C -0.14 -3.13 5.87 -20.09 -0.12 -3.24 16 8 C -0.07 -1.31 9.54 22.52 0.21 -1.09 16 9 C -0.12 -1.81 9.81 22.25 0.22 -1.59 16 10 C -0.01 -0.23 6.33 22.40 0.14 -0.09 16 11 Cl -0.06 -0.81 28.95 -2.72 -0.08 -0.89 16 12 C -0.11 -1.70 9.81 22.25 0.22 -1.48 16 13 C -0.05 -0.92 9.59 22.52 0.22 -0.70 16 14 C 0.41 18.30 7.27 71.24 0.52 18.81 16 15 O -0.56 -28.20 15.07 20.76 0.31 -27.89 16 16 O -0.25 -12.48 8.47 14.88 0.13 -12.35 16 17 C -0.41 -24.18 10.10 67.94 0.69 -23.49 16 18 H 0.06 4.20 7.09 -2.91 -0.02 4.18 16 19 C 0.02 1.12 5.49 84.87 0.47 1.58 16 20 N -0.91 -53.81 13.96 21.62 0.30 -53.51 16 21 Si 0.98 42.17 28.62 68.60 1.96 44.13 16 22 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 23 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 24 H -0.25 -10.30 7.11 99.48 0.71 -9.60 16 25 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 26 H 0.08 2.33 8.11 -2.38 -0.02 2.31 16 27 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 28 H 0.41 11.35 5.82 -92.71 -0.54 10.81 16 29 H 0.15 2.44 6.40 -2.91 -0.02 2.42 16 30 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 31 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 32 H 0.15 2.67 7.65 -2.91 -0.02 2.65 16 33 H 0.29 15.43 8.31 -92.70 -0.77 14.66 16 Total: -1.00 -70.34 314.71 5.04 -65.30 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.63 Total: 18.93 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 4.05 Total: 7.41 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: -1.90 Total: -76.16 kcal Atomic # 8 Polarization: -59.09 SS G_CDS: 0.38 Total: -58.72 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.96 Total: 44.13 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -70.34 5.04 -65.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005220249.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.061 kcal (2) G-P(sol) polarization free energy of solvation -70.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds