Wall clock time and date at job start Fri Apr 10 2020 20:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46494 * 120.00636 * 2 1 4 4 C 1.50699 * 109.47225 * 270.00515 * 3 2 1 5 5 C 1.38270 * 119.99106 * 269.72149 * 4 3 2 6 6 C 1.38219 * 120.01729 * 179.72269 * 5 4 3 7 7 C 1.38240 * 120.01015 * 0.55069 * 6 5 4 8 8 C 1.38305 * 119.99154 * 359.72397 * 7 6 5 9 9 Br 1.89097 * 120.01214 * 180.02562 * 8 7 6 10 10 C 1.38194 * 119.99897 * 89.99686 * 4 3 2 11 11 C 1.34781 * 119.99714 * 180.02562 * 2 1 3 12 12 O 1.21690 * 120.00174 * 179.72359 * 11 2 1 13 13 C 1.46375 * 120.00113 * 359.97438 * 11 2 1 14 14 H 1.08007 * 119.99786 * 352.43379 * 13 11 2 15 15 C 1.40042 * 120.00381 * 172.43007 * 13 11 2 16 16 N 1.30673 * 120.00102 * 6.05674 * 15 13 11 17 17 Si 1.86806 * 120.00238 * 186.05264 * 15 13 11 18 18 H 1.48491 * 109.46959 * 94.98083 * 17 15 13 19 19 H 1.48503 * 109.46978 * 214.98156 * 17 15 13 20 20 H 1.48502 * 109.47036 * 334.97941 * 17 15 13 21 21 H 1.09000 * 109.46735 * 269.99937 * 1 2 3 22 22 H 1.08998 * 109.46832 * 29.99694 * 1 2 3 23 23 H 1.08995 * 109.47408 * 150.00093 * 1 2 3 24 24 H 1.09005 * 109.47050 * 30.00021 * 3 2 1 25 25 H 1.08997 * 109.47585 * 149.99715 * 3 2 1 26 26 H 1.07994 * 119.99040 * 0.02562 * 5 4 3 27 27 H 1.08001 * 119.99430 * 180.27413 * 6 5 4 28 28 H 1.07999 * 120.00890 * 179.74094 * 7 6 5 29 29 H 1.08001 * 120.00152 * 359.97438 * 10 4 3 30 30 H 0.96993 * 120.00694 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7037 -1.4208 5 6 3.6037 1.3091 -2.0706 6 6 3.8319 1.7031 -3.3756 7 6 2.9108 2.5013 -4.0280 8 6 1.7581 2.9009 -3.3765 9 35 0.4974 3.9921 -4.2685 10 6 1.5274 2.5016 -2.0721 11 6 2.1389 -1.1673 -0.0005 12 8 3.3557 -1.1674 -0.0056 13 6 1.4069 -2.4349 -0.0005 14 1 0.3340 -2.4389 0.1231 15 6 2.0978 -3.6424 -0.1608 16 7 3.4042 -3.6487 -0.1916 17 14 1.1519 -5.2444 -0.3305 18 1 0.9742 -5.5641 -1.7696 19 1 1.9086 -6.3383 0.3299 20 1 -0.1788 -5.1041 0.3135 21 1 -0.3633 0.0000 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3634 -0.8899 -0.5138 24 1 1.6086 2.0283 0.5139 25 1 3.1500 1.1383 0.5138 26 1 4.3253 0.6889 -1.5599 27 1 4.7320 1.3910 -3.8843 28 1 3.0911 2.8126 -5.0463 29 1 0.6273 2.8131 -1.5631 30 1 3.8828 -4.4850 -0.3023 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042440708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:28:33 Heat of formation + Delta-G solvation = -28.629817 kcal Electronic energy + Delta-G solvation = -16061.374981 eV Core-core repulsion = 13287.992204 eV Total energy + Delta-G solvation = -2773.382777 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 297.011 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.60102 -39.22422 -35.94793 -34.57032 -33.44558 -32.57319 -30.28129 -28.91266 -27.67763 -26.03726 -23.44088 -22.61713 -20.94982 -18.43038 -17.81115 -17.58628 -16.39895 -16.35796 -16.28687 -15.75278 -15.27643 -14.46290 -14.39105 -14.02232 -13.82281 -13.40413 -13.14258 -13.06150 -12.85482 -12.72849 -12.37033 -12.15201 -12.01385 -11.93914 -11.79251 -11.27427 -10.91630 -10.02561 -9.75086 -9.55983 -9.08430 -8.27672 -6.81105 0.13227 0.29008 0.59646 1.39866 1.40210 1.55658 2.23814 2.48078 2.55241 3.10468 3.58753 3.81342 3.88174 4.10113 4.26091 4.36029 4.45160 4.57392 4.72832 4.76711 4.96483 4.97342 5.05602 5.17061 5.37556 5.38428 5.58846 5.80000 5.85010 6.15319 6.40606 6.90367 7.42546 8.49543 8.69067 Molecular weight = 297.01amu Principal moments of inertia in cm(-1) A = 0.025692 B = 0.004250 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.556817 B = 6586.529332 C = 6784.993023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.645 5.645 3 C 0.162 3.838 4 C -0.096 4.096 5 C -0.100 4.100 6 C -0.120 4.120 7 C -0.094 4.094 8 C -0.100 4.100 9 Br -0.041 7.041 10 C -0.081 4.081 11 C 0.541 3.459 12 O -0.620 6.620 13 C -0.570 4.570 14 H 0.089 0.911 15 C 0.032 3.968 16 N -0.820 5.820 17 Si 0.989 3.011 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.248 1.248 21 H 0.048 0.952 22 H 0.075 0.925 23 H 0.060 0.940 24 H 0.102 0.898 25 H 0.055 0.945 26 H 0.102 0.898 27 H 0.146 0.854 28 H 0.154 0.846 29 H 0.147 0.853 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.343 14.281 -8.108 17.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.381 5.381 3 C 0.038 3.962 4 C -0.099 4.099 5 C -0.119 4.119 6 C -0.139 4.139 7 C -0.113 4.113 8 C -0.180 4.180 9 Br 0.044 6.956 10 C -0.101 4.101 11 C 0.347 3.653 12 O -0.507 6.507 13 C -0.607 4.607 14 H 0.107 0.893 15 C -0.183 4.183 16 N -0.449 5.449 17 Si 0.809 3.191 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.171 1.171 21 H 0.067 0.933 22 H 0.094 0.906 23 H 0.079 0.921 24 H 0.120 0.880 25 H 0.073 0.927 26 H 0.120 0.880 27 H 0.163 0.837 28 H 0.172 0.828 29 H 0.164 0.836 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.029 14.616 -8.423 18.275 hybrid contribution 0.381 -1.144 0.282 1.238 sum -6.648 13.472 -8.141 17.087 Atomic orbital electron populations 1.21576 0.79518 1.02390 1.00956 1.47901 1.06871 1.04521 1.78809 1.20083 0.97801 0.86639 0.91636 1.20500 0.94320 0.96845 0.98202 1.21382 0.97513 0.97260 0.95776 1.21370 1.00502 0.97928 0.94056 1.21312 0.92243 0.97062 1.00714 1.21866 0.96806 1.03068 0.96211 1.96656 1.55922 1.65655 1.77326 1.21080 0.99129 0.96836 0.93088 1.18588 0.86738 0.84021 0.75956 1.90527 1.15862 1.87383 1.56915 1.21513 0.95487 0.90257 1.53429 0.89283 1.26894 0.95478 1.04428 0.91495 1.70177 1.09618 1.28717 1.36413 0.85123 0.79111 0.75676 0.79158 1.19056 1.19836 1.17083 0.93321 0.90628 0.92093 0.87970 0.92656 0.87957 0.83665 0.82840 0.83571 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.42 10.10 127.77 1.29 4.71 16 2 N -0.65 -28.61 2.86 -856.28 -2.45 -31.05 16 3 C 0.16 6.14 5.53 85.63 0.47 6.61 16 4 C -0.10 -3.41 5.46 -19.87 -0.11 -3.52 16 5 C -0.10 -3.80 9.70 22.27 0.22 -3.58 16 6 C -0.12 -3.66 10.05 22.27 0.22 -3.43 16 7 C -0.09 -2.47 9.79 22.29 0.22 -2.25 16 8 C -0.10 -2.70 6.22 22.31 0.14 -2.56 16 9 Br -0.04 -0.89 33.70 -20.37 -0.69 -1.58 16 10 C -0.08 -2.36 9.44 22.29 0.21 -2.15 16 11 C 0.54 30.77 7.60 86.36 0.66 31.43 16 12 O -0.62 -40.08 14.16 -4.32 -0.06 -40.14 16 13 C -0.57 -31.91 8.65 24.83 0.21 -31.70 16 14 H 0.09 4.49 6.15 -2.91 -0.02 4.47 16 15 C 0.03 1.78 5.49 85.30 0.47 2.25 16 16 N -0.82 -49.67 11.86 21.83 0.26 -49.41 16 17 Si 0.99 40.80 29.56 68.60 2.03 42.83 16 18 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 21 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.08 2.07 8.07 -2.39 -0.02 2.05 16 23 H 0.06 2.25 6.20 -2.39 -0.01 2.24 16 24 H 0.10 3.01 8.02 -2.38 -0.02 2.99 16 25 H 0.05 2.39 7.37 -2.39 -0.02 2.38 16 26 H 0.10 4.58 7.58 -2.91 -0.02 4.56 16 27 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 28 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 29 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 30 H 0.27 15.03 8.29 -92.71 -0.77 14.26 16 Total: -1.00 -71.74 285.50 4.25 -67.50 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 1.15 Total: 16.06 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 4.00 Total: -4.20 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -2.19 Total: -80.46 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -0.06 Total: -40.14 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Atomic # 35 Polarization: -0.89 SS G_CDS: -0.69 Total: -1.58 kcal Total: -71.74 4.25 -67.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042440708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.866 kcal (2) G-P(sol) polarization free energy of solvation -71.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds