Wall clock time and date at job start Fri Apr 10 2020 20:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86804 * 119.99569 * 2 1 4 4 H 1.48500 * 109.46538 * 269.99653 * 3 2 1 5 5 H 1.48496 * 109.47049 * 29.99363 * 3 2 1 6 6 H 1.48493 * 109.47126 * 149.99697 * 3 2 1 7 7 C 1.38793 * 120.00396 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00014 * 0.02562 * 7 2 1 9 9 S 1.76198 * 120.00230 * 180.02562 * 7 2 1 10 10 C 1.81000 * 100.00286 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47233 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00245 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00087 * 180.02562 * 11 10 9 14 14 N 1.40096 * 120.00057 * 180.02562 * 13 11 10 15 15 C 1.38225 * 120.00025 * 179.97438 * 14 13 11 16 16 N 1.32429 * 119.82966 * 354.33591 * 15 14 13 17 17 C 1.31850 * 121.77960 * 179.97438 * 16 15 14 18 18 C 1.38397 * 121.22850 * 359.97438 * 17 16 15 19 19 C 1.38303 * 119.51778 * 0.25212 * 18 17 16 20 20 C 1.40043 * 118.36363 * 359.49075 * 19 18 17 21 21 C 1.47277 * 120.61428 * 180.26395 * 20 19 18 22 22 O 1.21529 * 120.00114 * 185.88888 * 21 20 19 23 23 O 1.34768 * 120.00112 * 5.88122 * 21 20 19 24 24 H 0.96994 * 120.00592 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46889 * 60.00306 * 10 9 7 26 26 H 1.08998 * 109.47214 * 300.00599 * 10 9 7 27 27 H 0.97002 * 119.99683 * 0.02562 * 13 11 10 28 28 H 0.97001 * 120.00223 * 0.02562 * 14 13 11 29 29 H 1.07992 * 119.38096 * 180.02562 * 17 16 15 30 30 H 1.08004 * 120.23441 * 179.97438 * 18 17 16 31 31 H 1.08002 * 120.81605 * 179.72973 * 19 18 17 32 32 H 0.96706 * 116.99980 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4404 0.7001 7 6 2.0103 -1.2019 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7723 -1.2019 0.0012 10 6 4.0868 -2.9844 0.0025 11 6 5.5732 -3.2322 0.0026 12 8 6.3441 -2.2960 0.0024 13 7 6.0459 -4.4944 0.0030 14 7 7.4278 -4.7249 0.0037 15 6 7.9126 -6.0193 0.0046 16 7 7.0730 -7.0371 0.1183 17 6 7.4934 -8.2868 0.1231 18 6 8.8384 -8.5919 0.0084 19 6 9.7616 -7.5687 -0.1085 20 6 9.2942 -6.2486 -0.1171 21 6 10.2333 -5.1213 -0.2450 22 8 9.8294 -3.9796 -0.1441 23 8 11.5405 -5.3559 -0.4739 24 1 -0.4851 0.8399 -0.0004 25 1 3.6442 -3.4320 -0.8874 26 1 3.6435 -3.4309 0.8926 27 1 5.4293 -5.2432 0.0029 28 1 8.0444 -3.9760 0.0042 29 1 6.7746 -9.0872 0.2175 30 1 9.1650 -9.6213 0.0146 31 1 10.8167 -7.7827 -0.1948 32 1 12.1183 -4.5841 -0.5500 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480304.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:30:14 Heat of formation + Delta-G solvation = -43.506198 kcal Electronic energy + Delta-G solvation = -20380.931243 eV Core-core repulsion = 16855.667521 eV Total energy + Delta-G solvation = -3525.263722 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 297.062 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.29937 -39.80763 -39.30390 -36.75533 -35.88234 -33.04137 -32.61687 -32.45587 -30.22254 -28.10999 -25.63828 -25.48606 -23.30411 -22.38185 -20.89822 -18.91089 -18.53123 -17.89648 -17.58688 -17.43803 -16.29424 -16.13790 -15.62333 -15.38678 -15.00779 -14.99915 -14.49598 -14.30751 -14.04239 -13.55052 -13.39832 -12.85173 -12.81502 -12.65491 -12.01310 -11.76557 -11.29698 -11.03773 -11.02323 -10.70252 -10.38607 -10.08638 -9.90680 -9.76391 -9.71163 -9.02325 -8.54887 -7.75117 -6.95803 -6.30845 -4.03660 0.23305 1.00805 1.74902 2.16039 2.60775 2.79097 2.88691 3.32101 3.45403 3.46817 3.49675 3.65590 4.25882 4.31103 4.42324 4.53831 4.59262 4.74024 5.00220 5.08163 5.19711 5.25734 5.50750 5.66716 5.70229 5.92922 5.97191 6.13776 6.60398 7.05719 7.38813 7.47915 7.82148 7.92127 8.39649 8.40377 9.14913 10.78278 Molecular weight = 297.06amu Principal moments of inertia in cm(-1) A = 0.029752 B = 0.003110 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.895668 B = 9000.584250 C = 9920.086811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.235 1.235 7 C -0.523 4.523 8 H 0.090 0.910 9 S -0.133 6.133 10 C -0.114 4.114 11 C 0.529 3.471 12 O -0.513 6.513 13 N -0.528 5.528 14 N -0.483 5.483 15 C 0.459 3.541 16 N -0.553 5.553 17 C 0.202 3.798 18 C -0.259 4.259 19 C 0.038 3.962 20 C -0.263 4.263 21 C 0.540 3.460 22 O -0.519 6.519 23 O -0.509 6.509 24 H 0.271 0.729 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.431 0.569 28 H 0.454 0.546 29 H 0.167 0.833 30 H 0.142 0.858 31 H 0.149 0.851 32 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.764 -19.750 -0.360 28.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.112 4.112 3 Si 0.680 3.320 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.671 4.671 8 H 0.108 0.892 9 S 0.093 5.907 10 C -0.266 4.266 11 C 0.315 3.685 12 O -0.385 6.385 13 N -0.278 5.278 14 N -0.218 5.218 15 C 0.217 3.783 16 N -0.273 5.273 17 C 0.041 3.959 18 C -0.283 4.283 19 C 0.012 3.988 20 C -0.274 4.274 21 C 0.386 3.614 22 O -0.409 6.409 23 O -0.320 6.320 24 H 0.081 0.919 25 H 0.122 0.878 26 H 0.123 0.877 27 H 0.273 0.727 28 H 0.313 0.687 29 H 0.184 0.816 30 H 0.160 0.840 31 H 0.167 0.833 32 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 20.478 -17.694 -0.228 27.064 hybrid contribution 0.376 -0.170 -0.133 0.434 sum 20.854 -17.864 -0.361 27.462 Atomic orbital electron populations 1.69930 1.05894 1.27834 1.47876 1.24692 0.94444 0.98948 0.93123 0.86750 0.81904 0.83318 0.79983 1.19155 1.19857 1.15907 1.22307 0.88071 0.97674 1.59021 0.89163 1.84867 1.09473 0.98874 1.97465 1.23197 0.91573 1.05199 1.06617 1.20678 0.91229 0.80655 0.75918 1.90755 1.58311 1.41611 1.47816 1.45162 0.95221 1.09595 1.77866 1.44676 0.97154 1.05768 1.74183 1.18140 0.87011 0.85381 0.87760 1.67329 1.37176 0.99670 1.23075 1.22806 0.94749 0.92023 0.86370 1.21807 0.93997 1.00611 1.11838 1.21621 1.00838 0.89876 0.86487 1.18951 0.90473 0.93473 1.24498 1.20486 0.81138 0.87835 0.71921 1.90642 1.77126 1.24153 1.49008 1.84517 1.19498 1.43992 1.84010 0.91871 0.87758 0.87675 0.72739 0.68708 0.81604 0.84005 0.83309 0.72333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.44 13.97 55.49 0.78 -25.67 16 2 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 3 Si 0.86 21.76 27.74 -169.99 -4.72 17.05 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 7 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 8 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 9 S -0.13 -3.36 18.55 -107.50 -1.99 -5.35 16 10 C -0.11 -2.20 6.16 36.00 0.22 -1.98 16 11 C 0.53 9.93 7.96 -10.99 -0.09 9.84 16 12 O -0.51 -11.58 15.70 5.56 0.09 -11.49 16 13 N -0.53 -8.05 6.28 31.22 0.20 -7.85 16 14 N -0.48 -7.33 6.28 31.27 0.20 -7.14 16 15 C 0.46 5.75 7.60 -155.20 -1.18 4.57 16 16 N -0.55 -6.03 9.36 -12.19 -0.11 -6.14 16 17 C 0.20 1.46 11.16 -17.48 -0.20 1.27 16 18 C -0.26 -1.52 10.08 -39.50 -0.40 -1.92 16 19 C 0.04 0.27 9.73 -38.88 -0.38 -0.11 16 20 C -0.26 -2.76 5.91 -104.66 -0.62 -3.37 16 21 C 0.54 5.84 8.25 34.41 0.28 6.13 16 22 O -0.52 -7.46 14.46 -19.29 -0.28 -7.74 16 23 O -0.51 -3.51 12.77 -40.68 -0.52 -4.03 16 24 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.10 1.83 8.14 -51.91 -0.42 1.40 16 26 H 0.11 1.84 8.14 -51.92 -0.42 1.42 16 27 H 0.43 5.46 7.96 -182.60 -1.45 4.01 16 28 H 0.45 7.70 4.51 -182.69 -0.82 6.88 16 29 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 30 H 0.14 0.41 8.06 -52.48 -0.42 -0.01 16 31 H 0.15 0.70 7.71 -52.49 -0.40 0.30 16 32 H 0.42 1.19 9.11 45.56 0.42 1.61 16 LS Contribution 306.48 15.07 4.62 4.62 Total: -1.00 -36.71 306.48 -7.42 -44.13 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -3.53 Total: 7.12 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -2.14 Total: 2.50 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 1.05 Total: -46.80 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.71 Total: -23.26 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.72 Total: 17.05 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -1.99 Total: -5.35 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -36.71 -7.42 -44.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480304.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.622 kcal (2) G-P(sol) polarization free energy of solvation -36.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds