Wall clock time and date at job start Fri Apr 10 2020 20:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45200 * 109.47014 * 2 1 4 4 C 1.34777 * 116.99899 * 180.02562 * 3 2 1 5 5 O 1.21539 * 119.99728 * 359.97438 * 4 3 2 6 6 C 1.47237 * 120.00043 * 180.02562 * 4 3 2 7 7 C 1.40041 * 120.62180 * 0.02562 * 6 4 3 8 8 C 1.38304 * 118.37128 * 180.02562 * 7 6 4 9 9 C 1.38426 * 119.53115 * 0.27805 * 8 7 6 10 10 N 1.31810 * 121.24037 * 359.43860 * 9 8 7 11 11 C 1.32514 * 121.77526 * 0.54755 * 10 9 8 12 12 S 1.76204 * 119.84084 * 179.72566 * 11 10 9 13 13 C 1.81004 * 99.99944 * 0.02565 * 12 11 10 14 14 C 1.53000 * 109.46992 * 180.02562 * 13 12 11 15 15 H 1.08992 * 109.47521 * 59.99749 * 14 13 12 16 16 O 1.42899 * 109.46887 * 299.99731 * 14 13 12 17 17 C 1.50700 * 109.46735 * 180.02562 * 14 13 12 18 18 H 1.07994 * 120.00224 * 359.97438 * 17 14 13 19 19 C 1.37881 * 119.99622 * 179.97438 * 17 14 13 20 20 N 1.31515 * 120.00021 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 119.99769 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.47397 * 60.00036 * 21 19 17 23 23 H 1.48501 * 109.46751 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47169 * 299.99471 * 21 19 17 25 25 H 1.09001 * 109.47512 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47174 * 300.00054 * 1 2 3 27 27 H 1.09011 * 109.47109 * 59.99810 * 1 2 3 28 28 H 1.08998 * 109.47174 * 239.99946 * 2 1 3 29 29 H 1.08997 * 109.47048 * 120.00069 * 2 1 3 30 30 H 1.07998 * 120.81075 * 359.97438 * 7 6 4 31 31 H 1.08002 * 120.23131 * 179.97438 * 8 7 6 32 32 H 1.07997 * 119.37809 * 179.70513 * 9 8 7 33 33 H 1.08999 * 109.46790 * 299.99869 * 13 12 11 34 34 H 1.08996 * 109.47050 * 59.99451 * 13 12 11 35 35 H 0.96704 * 114.00078 * 300.00295 * 16 14 13 36 36 H 0.96999 * 119.99744 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3502 1.5456 -0.0005 5 8 4.0905 0.5817 -0.0005 6 6 3.9129 2.9061 0.0000 7 6 3.0720 4.0259 0.0016 8 6 3.6504 5.2822 0.0015 9 6 5.0298 5.3983 -0.0060 10 7 5.8055 4.3326 -0.0020 11 6 5.3054 3.1055 -0.0015 12 16 6.3898 1.7167 -0.0035 13 6 7.9882 2.5661 -0.0050 14 6 9.1155 1.5316 -0.0074 15 1 9.0345 0.9081 -0.8977 16 8 9.0126 0.7123 1.1588 17 6 10.4462 2.2388 -0.0081 18 1 10.4841 3.3181 -0.0072 19 6 11.6153 1.5079 -0.0097 20 7 11.5691 0.1935 -0.0102 21 14 13.2648 2.3845 -0.0112 22 1 13.3749 3.2344 1.2015 23 1 14.3589 1.3804 -0.0134 24 1 13.3721 3.2354 -1.2235 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.9981 3.9112 0.0021 31 1 3.0302 6.1664 0.0023 32 1 5.4788 6.3804 -0.0109 33 1 8.0668 3.1907 -0.8948 34 1 8.0689 3.1899 0.8851 35 1 9.0763 1.2018 1.9903 36 1 12.3916 -0.3207 -0.0117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352147607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:30:10 Heat of formation + Delta-G solvation = -102.429218 kcal Electronic energy + Delta-G solvation = -20990.575649 eV Core-core repulsion = 17566.297176 eV Total energy + Delta-G solvation = -3424.278473 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.68807 -39.46737 -36.60442 -35.82615 -33.01452 -32.13642 -31.86760 -31.30338 -29.58633 -25.61087 -25.08604 -23.84479 -23.11507 -21.46787 -20.76242 -18.21770 -17.66262 -17.11890 -16.83306 -16.63012 -16.08424 -15.09455 -14.68130 -14.60188 -14.30583 -14.15589 -13.97885 -13.66314 -13.53091 -13.23378 -13.01266 -12.67623 -12.11667 -12.00706 -11.74157 -11.47967 -11.23612 -10.95604 -10.87664 -10.80489 -10.64301 -10.15510 -10.12386 -9.68048 -9.59329 -9.38806 -9.03763 -8.57610 -8.22665 -7.17622 -6.02062 -4.21455 0.46520 1.07802 1.94716 2.51418 2.55517 2.97717 3.29526 3.34582 3.36929 3.66159 4.38998 4.41856 4.63974 4.68384 4.73867 4.78243 4.90402 5.06695 5.09410 5.24671 5.28178 5.53753 5.54707 5.71214 5.75413 5.91030 5.99286 6.17892 6.30352 6.33457 6.40719 6.82528 7.63159 7.69510 7.75287 7.81360 8.10880 8.79863 9.34692 9.54775 11.01996 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.022314 B = 0.003719 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.512189 B = 7526.797233 C = 8676.774381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.359 6.359 4 C 0.504 3.496 5 O -0.471 6.471 6 C -0.186 4.186 7 C 0.000 4.000 8 C -0.215 4.215 9 C 0.155 3.845 10 N -0.492 5.492 11 C 0.158 3.842 12 S 0.052 5.948 13 C -0.156 4.156 14 C 0.244 3.756 15 H 0.063 0.937 16 O -0.559 6.559 17 C -0.568 4.568 18 H 0.059 0.941 19 C 0.080 3.920 20 N -0.858 5.858 21 Si 0.894 3.106 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.275 1.275 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.147 0.853 31 H 0.140 0.860 32 H 0.162 0.838 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.347 0.653 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.959 6.934 0.236 23.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.277 6.277 4 C 0.348 3.652 5 O -0.358 6.358 6 C -0.199 4.199 7 C -0.026 4.026 8 C -0.240 4.240 9 C -0.008 4.008 10 N -0.205 5.205 11 C -0.090 4.090 12 S 0.303 5.697 13 C -0.304 4.304 14 C 0.184 3.816 15 H 0.081 0.919 16 O -0.362 6.362 17 C -0.607 4.607 18 H 0.077 0.923 19 C -0.127 4.127 20 N -0.493 5.493 21 Si 0.721 3.279 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.165 0.835 31 H 0.158 0.842 32 H 0.179 0.821 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.191 0.809 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.872 4.669 -0.229 21.389 hybrid contribution 0.348 2.279 0.333 2.329 sum -20.524 6.948 0.103 21.668 Atomic orbital electron populations 1.21804 0.92694 1.02971 1.03355 1.23032 0.95094 0.80005 1.03017 1.86500 1.23737 1.32480 1.84942 1.20720 0.80732 0.89498 0.74291 1.90889 1.59042 1.41590 1.44313 1.19500 0.93121 0.91586 1.15693 1.21739 1.00275 0.91201 0.89416 1.21952 0.96388 0.98084 1.07571 1.23101 0.90766 0.97623 0.89357 1.68423 1.38605 0.97328 1.16139 1.24173 0.93982 0.97939 0.92895 1.87314 0.97163 1.01499 1.83692 1.25040 0.95805 1.04041 1.05542 1.19194 0.88614 0.87040 0.86741 0.91899 1.86595 1.95600 1.38671 1.15300 1.21506 0.90674 0.93236 1.55330 0.92323 1.25051 0.99201 0.94725 0.93740 1.70075 1.27832 1.04848 1.46533 0.86654 0.83119 0.79373 0.78743 1.20078 1.21143 1.20094 0.90202 0.91550 0.91563 0.91002 0.90979 0.83544 0.84194 0.82068 0.89550 0.90056 0.80924 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.29 37.16 0.38 -0.61 16 2 C 0.06 0.62 6.20 37.16 0.23 0.85 16 3 O -0.36 -4.41 9.54 -40.70 -0.39 -4.80 16 4 C 0.50 7.74 7.88 34.39 0.27 8.01 16 5 O -0.47 -8.62 13.59 -19.30 -0.26 -8.88 16 6 C -0.19 -2.78 5.91 -104.65 -0.62 -3.40 16 7 C 0.00 0.01 9.73 -38.88 -0.38 -0.37 16 8 C -0.22 -2.08 10.08 -39.49 -0.40 -2.48 16 9 C 0.16 1.84 11.16 -17.49 -0.20 1.65 16 10 N -0.49 -8.03 9.13 -11.66 -0.11 -8.13 16 11 C 0.16 2.76 7.02 -16.34 -0.11 2.64 16 12 S 0.05 1.06 18.63 -107.50 -2.00 -0.94 16 13 C -0.16 -3.41 4.47 37.16 0.17 -3.24 16 14 C 0.24 6.36 2.87 -27.88 -0.08 6.28 16 15 H 0.06 1.81 8.14 -51.93 -0.42 1.39 16 16 O -0.56 -14.83 12.32 -35.23 -0.43 -15.27 16 17 C -0.57 -15.78 8.76 -34.44 -0.30 -16.08 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 19 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 20 N -0.86 -25.64 12.84 55.43 0.71 -24.93 16 21 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.15 1.21 7.70 -52.49 -0.40 0.80 16 31 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 32 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.09 1.88 8.12 -51.92 -0.42 1.46 16 34 H 0.08 1.75 8.12 -51.92 -0.42 1.33 16 35 H 0.35 8.20 9.04 45.56 0.41 8.61 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 330.67 15.07 4.98 4.98 Total: -1.00 -33.54 330.67 -7.41 -40.95 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -3.76 Total: 5.32 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -1.13 Total: -4.61 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: 0.61 Total: -33.06 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -1.08 Total: -28.94 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.00 Total: -0.94 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.54 -7.41 -40.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352147607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.476 kcal (2) G-P(sol) polarization free energy of solvation -33.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds