Wall clock time and date at job start Fri Apr 10 2020 20:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45200 * 109.47014 * 2 1 4 4 C 1.34777 * 116.99899 * 180.02562 * 3 2 1 5 5 O 1.21539 * 119.99728 * 359.97438 * 4 3 2 6 6 C 1.47237 * 120.00043 * 180.02562 * 4 3 2 7 7 C 1.40041 * 120.62180 * 0.02562 * 6 4 3 8 8 C 1.38304 * 118.37128 * 180.02562 * 7 6 4 9 9 C 1.38426 * 119.53115 * 0.27805 * 8 7 6 10 10 N 1.31810 * 121.24037 * 359.43860 * 9 8 7 11 11 C 1.32514 * 121.77526 * 0.54755 * 10 9 8 12 12 S 1.76204 * 119.84084 * 179.72566 * 11 10 9 13 13 C 1.81004 * 99.99944 * 0.02565 * 12 11 10 14 14 C 1.53000 * 109.46992 * 180.02562 * 13 12 11 15 15 H 1.08992 * 109.47521 * 59.99749 * 14 13 12 16 16 O 1.42899 * 109.46887 * 299.99731 * 14 13 12 17 17 C 1.50700 * 109.46735 * 180.02562 * 14 13 12 18 18 H 1.07994 * 120.00224 * 359.97438 * 17 14 13 19 19 C 1.37881 * 119.99622 * 179.97438 * 17 14 13 20 20 N 1.31515 * 120.00021 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 119.99769 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.47397 * 60.00036 * 21 19 17 23 23 H 1.48501 * 109.46751 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47169 * 299.99471 * 21 19 17 25 25 H 1.09001 * 109.47512 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47174 * 300.00054 * 1 2 3 27 27 H 1.09011 * 109.47109 * 59.99810 * 1 2 3 28 28 H 1.08998 * 109.47174 * 239.99946 * 2 1 3 29 29 H 1.08997 * 109.47048 * 120.00069 * 2 1 3 30 30 H 1.07998 * 120.81075 * 359.97438 * 7 6 4 31 31 H 1.08002 * 120.23131 * 179.97438 * 8 7 6 32 32 H 1.07997 * 119.37809 * 179.70513 * 9 8 7 33 33 H 1.08999 * 109.46790 * 299.99869 * 13 12 11 34 34 H 1.08996 * 109.47050 * 59.99451 * 13 12 11 35 35 H 0.96704 * 114.00078 * 300.00295 * 16 14 13 36 36 H 0.96999 * 119.99744 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3502 1.5456 -0.0005 5 8 4.0905 0.5817 -0.0005 6 6 3.9129 2.9061 0.0000 7 6 3.0720 4.0259 0.0016 8 6 3.6504 5.2822 0.0015 9 6 5.0298 5.3983 -0.0060 10 7 5.8055 4.3326 -0.0020 11 6 5.3054 3.1055 -0.0015 12 16 6.3898 1.7167 -0.0035 13 6 7.9882 2.5661 -0.0050 14 6 9.1155 1.5316 -0.0074 15 1 9.0345 0.9081 -0.8977 16 8 9.0126 0.7123 1.1588 17 6 10.4462 2.2388 -0.0081 18 1 10.4841 3.3181 -0.0072 19 6 11.6153 1.5079 -0.0097 20 7 11.5691 0.1935 -0.0102 21 14 13.2648 2.3845 -0.0112 22 1 13.3749 3.2344 1.2015 23 1 14.3589 1.3804 -0.0134 24 1 13.3721 3.2354 -1.2235 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.9981 3.9112 0.0021 31 1 3.0302 6.1664 0.0023 32 1 5.4788 6.3804 -0.0109 33 1 8.0668 3.1907 -0.8948 34 1 8.0689 3.1899 0.8851 35 1 9.0763 1.2018 1.9903 36 1 12.3916 -0.3207 -0.0117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352147607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:30:09 Heat of formation + Delta-G solvation = -126.100381 kcal Electronic energy + Delta-G solvation = -20991.602107 eV Core-core repulsion = 17566.297176 eV Total energy + Delta-G solvation = -3425.304932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.79826 -40.53496 -37.94988 -37.67307 -34.31327 -34.04876 -32.76949 -32.18857 -31.53979 -27.45456 -26.36342 -24.86323 -23.99109 -23.05311 -22.17310 -19.35291 -19.26697 -18.74549 -17.94313 -17.65140 -17.15259 -16.72649 -16.40478 -16.22455 -15.94514 -15.49070 -15.27694 -15.02734 -14.75364 -14.35618 -13.98656 -13.61877 -13.43961 -13.28705 -13.20167 -12.93750 -12.75910 -12.69341 -12.49670 -12.29637 -12.05259 -11.54830 -11.28927 -11.14848 -10.83125 -10.81877 -10.71944 -10.60988 -10.27792 -8.65750 -8.17332 -6.45406 -0.60552 0.09545 0.56563 1.35597 1.41294 1.42705 1.42990 1.51158 1.53926 2.38304 2.63602 3.08048 3.42903 3.68650 3.71867 3.95911 4.01954 4.09491 4.11324 4.20784 4.26652 4.34588 4.37498 4.47790 4.82868 4.91080 4.94942 4.96470 5.02964 5.12653 5.38151 5.49558 5.52788 5.63215 5.96683 6.61116 6.63771 6.66109 7.25886 7.43640 8.87365 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.022314 B = 0.003719 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.512189 B = 7526.797233 C = 8676.774381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 O -0.347 6.347 4 C 0.504 3.496 5 O -0.510 6.510 6 C -0.196 4.196 7 C 0.006 3.994 8 C -0.180 4.180 9 C 0.144 3.856 10 N -0.523 5.523 11 C 0.141 3.859 12 S -0.006 6.006 13 C -0.127 4.127 14 C 0.245 3.755 15 H 0.024 0.976 16 O -0.573 6.573 17 C -0.584 4.584 18 H 0.064 0.936 19 C 0.025 3.975 20 N -0.900 5.900 21 Si 0.969 3.031 22 H -0.265 1.265 23 H -0.283 1.283 24 H -0.267 1.267 25 H 0.098 0.902 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.183 0.817 31 H 0.194 0.806 32 H 0.197 0.803 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.357 0.643 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.319 10.139 0.459 26.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.021 4.021 3 O -0.264 6.264 4 C 0.349 3.651 5 O -0.401 6.401 6 C -0.208 4.208 7 C -0.020 4.020 8 C -0.203 4.203 9 C -0.018 4.018 10 N -0.237 5.237 11 C -0.107 4.107 12 S 0.242 5.758 13 C -0.276 4.276 14 C 0.185 3.815 15 H 0.042 0.958 16 O -0.377 6.377 17 C -0.623 4.623 18 H 0.082 0.918 19 C -0.178 4.178 20 N -0.536 5.536 21 Si 0.792 3.208 22 H -0.189 1.189 23 H -0.208 1.208 24 H -0.192 1.192 25 H 0.117 0.883 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.200 0.800 31 H 0.211 0.789 32 H 0.214 0.786 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.202 0.798 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.281 7.932 -0.004 24.595 hybrid contribution 0.792 1.415 0.261 1.643 sum -22.489 9.347 0.258 24.355 Atomic orbital electron populations 1.21813 0.89534 1.04479 1.04036 1.23350 0.97445 0.78816 1.02494 1.86496 1.21824 1.33896 1.84177 1.20985 0.81445 0.89446 0.73238 1.90868 1.60089 1.42866 1.46286 1.19672 0.92507 0.92726 1.15910 1.22207 1.01546 0.90278 0.87978 1.22539 0.95778 0.99233 1.02757 1.23829 0.92034 0.97589 0.88329 1.68305 1.40497 0.97821 1.17034 1.23678 0.93903 0.97252 0.95862 1.87379 0.97293 1.04501 1.86646 1.24451 0.95878 1.02263 1.04988 1.18959 0.90153 0.87055 0.85284 0.95788 1.86535 1.95778 1.39453 1.15953 1.21875 0.91754 0.93610 1.55036 0.91791 1.25991 1.03385 0.95375 0.93061 1.70229 1.28934 1.06654 1.47820 0.85478 0.77842 0.78178 0.79270 1.18938 1.20811 1.19151 0.88301 0.90818 0.90832 0.91639 0.91630 0.80007 0.78924 0.78611 0.90190 0.90140 0.79781 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 10.29 71.98 0.74 -0.80 16 2 C 0.05 1.01 6.20 71.98 0.45 1.45 16 3 O -0.35 -8.10 9.54 -56.88 -0.54 -8.64 16 4 C 0.50 15.51 7.88 70.19 0.55 16.06 16 5 O -0.51 -19.67 13.59 19.71 0.27 -19.41 16 6 C -0.20 -5.64 5.91 -19.88 -0.12 -5.75 16 7 C 0.01 0.11 9.73 22.72 0.22 0.33 16 8 C -0.18 -2.50 10.08 22.33 0.23 -2.27 16 9 C 0.14 2.90 11.16 84.74 0.95 3.85 16 10 N -0.52 -16.59 9.13 -190.80 -1.74 -18.33 16 11 C 0.14 4.96 7.02 85.18 0.60 5.56 16 12 S -0.01 -0.28 18.63 -56.49 -1.05 -1.33 16 13 C -0.13 -5.88 4.47 71.98 0.32 -5.56 16 14 C 0.24 13.52 2.87 29.85 0.09 13.61 16 15 H 0.02 1.50 8.14 -2.39 -0.02 1.49 16 16 O -0.57 -32.13 12.32 -148.98 -1.84 -33.97 16 17 C -0.58 -33.41 8.76 25.60 0.22 -33.18 16 18 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 19 C 0.02 1.42 5.40 84.66 0.46 1.88 16 20 N -0.90 -55.60 12.84 21.45 0.28 -55.33 16 21 Si 0.97 44.25 29.54 68.60 2.03 46.28 16 22 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 H 0.10 0.73 8.14 -2.39 -0.02 0.72 16 26 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.18 2.00 7.70 -2.91 -0.02 1.97 16 31 H 0.19 0.78 8.06 -2.91 -0.02 0.75 16 32 H 0.20 2.45 8.06 -2.91 -0.02 2.42 16 33 H 0.08 3.68 8.12 -2.40 -0.02 3.66 16 34 H 0.08 3.62 8.12 -2.40 -0.02 3.60 16 35 H 0.36 17.79 9.04 -74.05 -0.67 17.12 16 36 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -78.07 330.67 2.53 -75.54 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.43 Total: 20.00 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: 4.70 Total: -4.82 kcal Atomic # 7 Polarization: -72.19 SS G_CDS: -1.47 Total: -73.66 kcal Atomic # 8 Polarization: -59.90 SS G_CDS: -2.11 Total: -62.01 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -1.05 Total: -1.33 kcal Total: -78.07 2.53 -75.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352147607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.558 kcal (2) G-P(sol) polarization free energy of solvation -78.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds