Wall clock time and date at job start Fri Apr 10 2020 20:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86800 * 120.00179 * 2 1 4 4 H 1.48496 * 109.47179 * 275.41442 * 3 2 1 5 5 H 1.48501 * 109.47009 * 35.41245 * 3 2 1 6 6 H 1.48494 * 109.47119 * 155.41474 * 3 2 1 7 7 C 1.39925 * 119.99598 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00134 * 341.73267 * 7 2 1 9 9 C 1.41438 * 120.00278 * 161.73411 * 7 2 1 10 10 C 1.40795 * 120.17008 * 330.17568 * 9 7 2 11 11 C 1.37716 * 120.03748 * 180.02562 * 10 9 7 12 12 C 1.38372 * 120.40995 * 359.97438 * 11 10 9 13 13 C 1.39889 * 120.35321 * 359.77245 * 12 11 10 14 14 C 1.47857 * 120.02243 * 180.25242 * 13 12 11 15 15 N 1.32103 * 126.67344 * 0.23792 * 14 13 12 16 16 C 1.34212 * 105.54753 * 179.97438 * 15 14 13 17 17 C 1.50698 * 126.19058 * 180.02562 * 16 15 14 18 18 C 1.50696 * 109.47272 * 89.99334 * 17 16 15 19 19 C 1.41381 * 126.80124 * 124.71398 * 18 17 16 20 20 C 1.35455 * 103.98648 * 179.88792 * 19 18 17 21 21 O 1.34033 * 106.44424 * 0.36754 * 20 19 18 22 22 N 1.20922 * 111.56945 * 359.75222 * 21 20 19 23 23 N 1.30036 * 107.61937 * 359.97438 * 16 15 14 24 24 O 1.21279 * 110.48344 * 359.70729 * 23 16 15 25 25 C 1.39023 * 119.95494 * 0.48764 * 13 12 11 26 26 H 0.97010 * 119.99527 * 359.97438 * 1 2 3 27 27 H 1.07997 * 119.98356 * 0.02562 * 10 9 7 28 28 H 1.08001 * 119.79233 * 180.02562 * 11 10 9 29 29 H 1.07997 * 119.81670 * 180.02562 * 12 11 10 30 30 H 1.08999 * 109.46899 * 209.99681 * 17 16 15 31 31 H 1.09003 * 109.47098 * 329.99470 * 17 16 15 32 32 H 1.08005 * 128.00580 * 0.02562 * 19 18 17 33 33 H 1.07997 * 126.77483 * 180.13330 * 20 19 18 34 34 H 1.07999 * 120.20663 * 179.76437 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3755 2.1124 -1.3938 5 1 1.5017 2.6169 0.8113 6 1 3.5924 1.4098 0.5825 7 6 2.0079 -1.2118 -0.0005 8 1 1.5086 -2.1237 0.2922 9 6 3.3688 -1.2427 -0.3845 10 6 3.8624 -0.3099 -1.3165 11 6 5.1879 -0.3428 -1.6888 12 6 6.0430 -1.2889 -1.1517 13 6 5.5716 -2.2202 -0.2204 14 6 6.4930 -3.2244 0.3530 15 7 7.7796 -3.3586 0.0850 16 6 8.1969 -4.3918 0.8330 17 6 9.5981 -4.9443 0.8847 18 6 10.3784 -4.2349 1.9611 19 6 11.0603 -4.8323 3.0461 20 6 11.5960 -3.7826 3.7139 21 8 11.2270 -2.6802 3.0468 22 7 10.5535 -2.9505 2.0796 23 7 7.1738 -4.8293 1.5059 24 8 6.1866 -4.1721 1.2522 25 6 4.2351 -2.2040 0.1619 26 1 -0.4850 0.8402 0.0004 27 1 3.2012 0.4317 -1.7397 28 1 5.5624 0.3748 -2.4037 29 1 7.0808 -1.3057 -1.4501 30 1 9.5601 -6.0108 1.1063 31 1 10.0850 -4.7904 -0.0783 32 1 11.1380 -5.8826 3.2856 33 1 12.1982 -3.8253 4.6094 34 1 3.8659 -2.9236 0.8777 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356754276.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:30:23 Heat of formation + Delta-G solvation = 148.598712 kcal Electronic energy + Delta-G solvation = -22030.209386 eV Core-core repulsion = 18513.665101 eV Total energy + Delta-G solvation = -3516.544285 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.090 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.22115 -45.08288 -38.03430 -36.34153 -34.69332 -33.86872 -32.69278 -31.88528 -30.55476 -29.92839 -28.90679 -25.39233 -24.09430 -23.38455 -23.17384 -21.68130 -20.66005 -20.29889 -18.22262 -17.99571 -17.70249 -17.57357 -16.74270 -16.01275 -15.41149 -14.89190 -14.66973 -14.31340 -13.82941 -13.79630 -13.60375 -13.05672 -12.87240 -12.67991 -12.29543 -12.11801 -11.85181 -11.49192 -11.34335 -11.07448 -10.94925 -10.76625 -10.57793 -10.36276 -10.04446 -9.89124 -9.82475 -9.79359 -9.28683 -7.93339 -7.75544 -7.06612 -4.63285 1.07483 1.30315 1.89719 2.19339 2.43576 2.92480 3.03917 3.07321 3.14092 3.18148 3.25034 3.75732 3.88082 3.90555 4.16349 4.35236 4.47935 4.87924 5.05249 5.11772 5.12651 5.21283 5.43076 5.53383 5.71218 5.85218 5.97149 6.07045 6.24021 6.31179 6.51754 6.65069 6.85531 7.12273 7.32407 7.44484 7.63695 7.79727 8.08152 8.19847 8.40828 8.47257 8.63469 9.95300 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.026025 B = 0.003280 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.611813 B = 8534.154503 C = 8787.167736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.084 3.916 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.243 1.243 7 C -0.443 4.443 8 H 0.095 0.905 9 C 0.085 3.915 10 C -0.212 4.212 11 C -0.082 4.082 12 C -0.184 4.184 13 C -0.013 4.013 14 C 0.261 3.739 15 N -0.481 5.481 16 C 0.167 3.833 17 C 0.057 3.943 18 C 0.012 3.988 19 C -0.225 4.225 20 C -0.063 4.063 21 O 0.107 5.893 22 N -0.342 5.342 23 N -0.394 5.394 24 O 0.077 5.923 25 C -0.159 4.159 26 H 0.287 0.713 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.174 0.826 33 H 0.217 0.783 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.693 -6.429 4.407 19.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.135 4.135 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.215 1.215 6 H -0.166 1.166 7 C -0.471 4.471 8 H 0.113 0.887 9 C 0.082 3.918 10 C -0.232 4.232 11 C -0.100 4.100 12 C -0.205 4.205 13 C -0.015 4.015 14 C 0.046 3.954 15 N -0.214 5.214 16 C -0.107 4.107 17 C 0.017 3.983 18 C -0.148 4.148 19 C -0.247 4.247 20 C -0.145 4.145 21 O 0.037 5.963 22 N -0.043 5.043 23 N -0.104 5.104 24 O 0.019 5.981 25 C -0.181 4.181 26 H 0.098 0.902 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.191 0.809 33 H 0.234 0.766 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 17.453 -5.892 4.062 18.864 hybrid contribution 0.227 -0.067 0.420 0.482 sum 17.680 -5.959 4.483 19.188 Atomic orbital electron populations 1.69689 1.08105 1.30506 1.34172 1.26155 0.94757 1.01751 0.90884 0.86361 0.81477 0.79781 0.79061 1.19371 1.21497 1.16563 1.19484 0.92792 0.96384 1.38449 0.88717 1.17578 0.93115 0.90836 0.90243 1.21297 0.95707 1.03894 1.02275 1.20556 0.93501 0.97265 0.98722 1.20391 0.99300 0.98668 1.02158 1.17106 0.90736 0.93647 1.00015 1.26964 0.90400 0.90570 0.87505 1.72139 1.07630 1.16886 1.24741 1.25195 0.97557 0.93558 0.94381 1.18086 0.84386 0.98425 0.97368 1.23265 1.02128 0.90096 0.99276 1.22723 1.03385 1.01968 0.96593 1.26051 1.02586 0.85139 1.00698 1.84900 1.49548 1.33233 1.28665 1.74004 1.09585 1.17235 1.03478 1.74539 0.95088 1.18056 1.22674 1.85374 1.31119 1.34568 1.47038 1.21218 0.90702 1.03417 1.02750 0.90208 0.87519 0.87591 0.87027 0.86866 0.86743 0.80853 0.76616 0.86727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.49 13.93 55.55 0.77 -19.72 16 2 C 0.08 2.11 5.40 -17.35 -0.09 2.02 16 3 Si 0.91 19.75 24.52 -169.99 -4.17 15.58 16 4 H -0.27 -5.59 6.71 56.52 0.38 -5.21 16 5 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.24 -5.43 6.86 56.52 0.39 -5.04 16 7 C -0.44 -11.37 9.57 -37.73 -0.36 -11.73 16 8 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 9 C 0.09 2.05 5.10 -106.87 -0.55 1.50 16 10 C -0.21 -4.79 7.17 -38.81 -0.28 -5.06 16 11 C -0.08 -1.68 10.01 -39.72 -0.40 -2.08 16 12 C -0.18 -3.79 9.71 -38.91 -0.38 -4.17 16 13 C -0.01 -0.27 5.87 -105.05 -0.62 -0.88 16 14 C 0.26 5.26 8.01 -13.84 -0.11 5.15 16 15 N -0.48 -9.28 11.24 -10.17 -0.11 -9.40 16 16 C 0.17 2.83 7.42 -156.55 -1.16 1.67 16 17 C 0.06 0.69 6.44 -29.04 -0.19 0.50 16 18 C 0.01 0.15 6.58 -82.10 -0.54 -0.38 16 19 C -0.23 -2.00 11.12 -39.38 -0.44 -2.43 16 20 C -0.06 -0.50 12.30 29.74 0.37 -0.13 16 21 O 0.11 1.29 11.20 17.19 0.19 1.48 16 22 N -0.34 -5.09 12.05 33.42 0.40 -4.69 16 23 N -0.39 -7.18 12.15 31.18 0.38 -6.80 16 24 O 0.08 1.51 11.12 16.69 0.19 1.69 16 25 C -0.16 -3.57 9.47 -38.45 -0.36 -3.93 16 26 H 0.29 6.64 8.30 -40.82 -0.34 6.30 16 27 H 0.11 2.38 4.72 -52.49 -0.25 2.13 16 28 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 29 H 0.11 2.17 7.86 -52.49 -0.41 1.75 16 30 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.17 0.99 8.06 -52.48 -0.42 0.56 16 33 H 0.22 0.63 8.06 -52.49 -0.42 0.20 16 34 H 0.11 2.43 7.94 -52.49 -0.42 2.02 16 LS Contribution 308.35 15.07 4.65 4.65 Total: -1.00 -29.61 308.35 -5.59 -35.20 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -2.78 Total: 1.98 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -5.11 Total: -19.97 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 1.44 Total: -40.61 kcal Atomic # 8 Polarization: 2.79 SS G_CDS: 0.38 Total: 3.17 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.17 Total: 15.58 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.61 -5.59 -35.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356754276.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.803 kcal (2) G-P(sol) polarization free energy of solvation -29.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds