Wall clock time and date at job start Fri Apr 10 2020 20:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86800 * 120.00179 * 2 1 4 4 H 1.48496 * 109.47179 * 275.41442 * 3 2 1 5 5 H 1.48501 * 109.47009 * 35.41245 * 3 2 1 6 6 H 1.48494 * 109.47119 * 155.41474 * 3 2 1 7 7 C 1.39925 * 119.99598 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00134 * 341.73267 * 7 2 1 9 9 C 1.41438 * 120.00278 * 161.73411 * 7 2 1 10 10 C 1.40795 * 120.17008 * 330.17568 * 9 7 2 11 11 C 1.37716 * 120.03748 * 180.02562 * 10 9 7 12 12 C 1.38372 * 120.40995 * 359.97438 * 11 10 9 13 13 C 1.39889 * 120.35321 * 359.77245 * 12 11 10 14 14 C 1.47857 * 120.02243 * 180.25242 * 13 12 11 15 15 N 1.32103 * 126.67344 * 0.23792 * 14 13 12 16 16 C 1.34212 * 105.54753 * 179.97438 * 15 14 13 17 17 C 1.50698 * 126.19058 * 180.02562 * 16 15 14 18 18 C 1.50696 * 109.47272 * 89.99334 * 17 16 15 19 19 C 1.41381 * 126.80124 * 124.71398 * 18 17 16 20 20 C 1.35455 * 103.98648 * 179.88792 * 19 18 17 21 21 O 1.34033 * 106.44424 * 0.36754 * 20 19 18 22 22 N 1.20922 * 111.56945 * 359.75222 * 21 20 19 23 23 N 1.30036 * 107.61937 * 359.97438 * 16 15 14 24 24 O 1.21279 * 110.48344 * 359.70729 * 23 16 15 25 25 C 1.39023 * 119.95494 * 0.48764 * 13 12 11 26 26 H 0.97010 * 119.99527 * 359.97438 * 1 2 3 27 27 H 1.07997 * 119.98356 * 0.02562 * 10 9 7 28 28 H 1.08001 * 119.79233 * 180.02562 * 11 10 9 29 29 H 1.07997 * 119.81670 * 180.02562 * 12 11 10 30 30 H 1.08999 * 109.46899 * 209.99681 * 17 16 15 31 31 H 1.09003 * 109.47098 * 329.99470 * 17 16 15 32 32 H 1.08005 * 128.00580 * 0.02562 * 19 18 17 33 33 H 1.07997 * 126.77483 * 180.13330 * 20 19 18 34 34 H 1.07999 * 120.20663 * 179.76437 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3755 2.1124 -1.3938 5 1 1.5017 2.6169 0.8113 6 1 3.5924 1.4098 0.5825 7 6 2.0079 -1.2118 -0.0005 8 1 1.5086 -2.1237 0.2922 9 6 3.3688 -1.2427 -0.3845 10 6 3.8624 -0.3099 -1.3165 11 6 5.1879 -0.3428 -1.6888 12 6 6.0430 -1.2889 -1.1517 13 6 5.5716 -2.2202 -0.2204 14 6 6.4930 -3.2244 0.3530 15 7 7.7796 -3.3586 0.0850 16 6 8.1969 -4.3918 0.8330 17 6 9.5981 -4.9443 0.8847 18 6 10.3784 -4.2349 1.9611 19 6 11.0603 -4.8323 3.0461 20 6 11.5960 -3.7826 3.7139 21 8 11.2270 -2.6802 3.0468 22 7 10.5535 -2.9505 2.0796 23 7 7.1738 -4.8293 1.5059 24 8 6.1866 -4.1721 1.2522 25 6 4.2351 -2.2040 0.1619 26 1 -0.4850 0.8402 0.0004 27 1 3.2012 0.4317 -1.7397 28 1 5.5624 0.3748 -2.4037 29 1 7.0808 -1.3057 -1.4501 30 1 9.5601 -6.0108 1.1063 31 1 10.0850 -4.7904 -0.0783 32 1 11.1380 -5.8826 3.2856 33 1 12.1982 -3.8253 4.6094 34 1 3.8659 -2.9236 0.8777 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356754276.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:30:23 Heat of formation + Delta-G solvation = 129.359359 kcal Electronic energy + Delta-G solvation = -22031.043667 eV Core-core repulsion = 18513.665101 eV Total energy + Delta-G solvation = -3517.378566 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.090 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -46.60760 -45.97702 -39.78398 -37.58233 -36.01533 -35.45087 -34.14617 -32.68689 -32.33541 -31.43340 -30.08286 -27.22056 -25.64418 -24.59765 -24.13139 -22.91732 -22.40180 -21.56159 -19.69115 -19.28996 -18.75238 -18.62049 -18.25757 -17.71826 -16.66451 -16.45225 -16.06603 -15.72863 -15.26882 -14.77013 -14.61844 -14.46671 -14.38489 -14.04959 -13.74592 -13.57458 -13.50213 -12.97586 -12.79241 -12.62694 -12.38918 -12.30689 -12.13263 -11.76574 -11.59258 -11.43470 -11.16238 -11.04415 -10.61251 -9.68908 -9.48414 -8.92395 -6.56307 -0.52909 0.55456 0.67693 0.68951 1.17248 1.27698 1.37274 1.42311 1.52358 1.62863 2.11330 2.45352 2.53770 2.55255 2.83673 3.15396 3.37372 3.64485 3.81701 4.16215 4.22067 4.32127 4.34673 4.39726 4.41550 4.57747 4.68183 4.73756 4.81080 4.83937 4.90609 5.09636 5.12634 5.37120 5.59177 5.69984 5.80629 6.03982 6.27302 6.58624 6.73323 6.97287 7.32196 8.15631 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.026025 B = 0.003280 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.611813 B = 8534.154503 C = 8787.167736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.050 3.950 3 Si 0.958 3.042 4 H -0.247 1.247 5 H -0.278 1.278 6 H -0.252 1.252 7 C -0.480 4.480 8 H 0.062 0.938 9 C 0.072 3.928 10 C -0.218 4.218 11 C -0.077 4.077 12 C -0.170 4.170 13 C -0.015 4.015 14 C 0.249 3.751 15 N -0.488 5.488 16 C 0.177 3.823 17 C 0.055 3.945 18 C -0.007 4.007 19 C -0.227 4.227 20 C -0.048 4.048 21 O 0.090 5.910 22 N -0.396 5.396 23 N -0.401 5.401 24 O 0.062 5.938 25 C -0.172 4.172 26 H 0.296 0.704 27 H 0.112 0.888 28 H 0.147 0.853 29 H 0.130 0.870 30 H 0.147 0.853 31 H 0.127 0.873 32 H 0.207 0.793 33 H 0.266 0.734 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.114 -6.382 4.447 22.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.165 4.165 3 Si 0.780 3.220 4 H -0.172 1.172 5 H -0.204 1.204 6 H -0.176 1.176 7 C -0.509 4.509 8 H 0.080 0.920 9 C 0.070 3.930 10 C -0.238 4.238 11 C -0.095 4.095 12 C -0.191 4.191 13 C -0.018 4.018 14 C 0.033 3.967 15 N -0.222 5.222 16 C -0.097 4.097 17 C 0.016 3.984 18 C -0.166 4.166 19 C -0.249 4.249 20 C -0.128 4.128 21 O 0.022 5.978 22 N -0.099 5.099 23 N -0.113 5.113 24 O 0.007 5.993 25 C -0.193 4.193 26 H 0.107 0.893 27 H 0.130 0.870 28 H 0.165 0.835 29 H 0.148 0.852 30 H 0.165 0.835 31 H 0.145 0.855 32 H 0.224 0.776 33 H 0.281 0.719 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 20.858 -5.850 4.103 22.048 hybrid contribution -0.561 -0.252 0.447 0.760 sum 20.297 -6.102 4.550 21.677 Atomic orbital electron populations 1.69715 1.09215 1.31713 1.36178 1.26803 0.95321 1.04132 0.90267 0.85599 0.79712 0.76548 0.80112 1.17222 1.20411 1.17587 1.19448 0.94062 0.95963 1.41393 0.92028 1.17682 0.92615 0.91907 0.90815 1.21471 0.96920 1.03507 1.01855 1.20957 0.92347 0.97535 0.98674 1.20743 1.00167 0.97534 1.00633 1.17224 0.90412 0.94085 1.00039 1.26803 0.90762 0.90941 0.88188 1.72147 1.07059 1.17707 1.25245 1.26029 0.99011 0.92167 0.92499 1.18449 0.81502 1.00057 0.98410 1.23567 1.02654 0.90071 1.00319 1.23153 1.02699 1.03785 0.95230 1.27017 1.01298 0.83551 1.00954 1.84828 1.49511 1.34859 1.28573 1.74002 1.11754 1.18802 1.05357 1.74540 0.95212 1.18265 1.23294 1.85369 1.31955 1.34745 1.47189 1.21249 0.91381 1.03491 1.03209 0.89347 0.87049 0.83535 0.85223 0.83484 0.85504 0.77632 0.71856 0.86962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.67 13.93 21.82 0.30 -44.36 16 2 C 0.05 2.59 5.40 85.25 0.46 3.05 16 3 Si 0.96 40.37 24.52 68.60 1.68 42.05 16 4 H -0.25 -9.56 6.71 99.48 0.67 -8.89 16 5 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.25 -10.92 6.86 99.48 0.68 -10.23 16 7 C -0.48 -25.89 9.57 23.47 0.22 -25.66 16 8 H 0.06 3.59 8.06 -2.91 -0.02 3.56 16 9 C 0.07 3.54 5.10 -21.32 -0.11 3.43 16 10 C -0.22 -9.58 7.17 22.77 0.16 -9.42 16 11 C -0.08 -2.93 10.01 22.18 0.22 -2.71 16 12 C -0.17 -6.62 9.71 22.70 0.22 -6.40 16 13 C -0.02 -0.64 5.87 -20.14 -0.12 -0.76 16 14 C 0.25 9.94 8.01 87.32 0.70 10.63 16 15 N -0.49 -18.24 11.24 -302.78 -3.40 -21.65 16 16 C 0.18 5.74 7.42 138.52 1.03 6.77 16 17 C 0.05 1.20 6.44 29.10 0.19 1.38 16 18 C -0.01 -0.17 6.58 43.58 0.29 0.12 16 19 C -0.23 -3.25 11.12 22.40 0.25 -3.00 16 20 C -0.05 -0.59 12.30 67.18 0.83 0.24 16 21 O 0.09 2.03 11.20 71.70 0.80 2.83 16 22 N -0.40 -11.31 12.05 -49.56 -0.60 -11.90 16 23 N -0.40 -14.28 12.15 -58.68 -0.71 -14.99 16 24 O 0.06 2.42 11.12 69.78 0.78 3.20 16 25 C -0.17 -7.89 9.47 23.00 0.22 -7.67 16 26 H 0.30 14.03 8.30 -92.70 -0.77 13.26 16 27 H 0.11 4.77 4.72 -2.91 -0.01 4.76 16 28 H 0.15 4.40 8.06 -2.91 -0.02 4.37 16 29 H 0.13 4.62 7.86 -2.91 -0.02 4.60 16 30 H 0.15 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.21 1.39 8.06 -2.91 -0.02 1.37 16 33 H 0.27 0.22 8.06 -2.91 -0.02 0.20 16 34 H 0.11 5.05 7.94 -2.91 -0.02 5.03 16 Total: -1.00 -67.17 308.35 4.50 -62.66 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 1.10 Total: 12.14 kcal Atomic # 6 Polarization: -34.54 SS G_CDS: 4.56 Total: -29.98 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -4.41 Total: -92.91 kcal Atomic # 8 Polarization: 4.45 SS G_CDS: 1.58 Total: 6.03 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 1.68 Total: 42.05 kcal Total: -67.17 4.50 -62.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356754276.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.022 kcal (2) G-P(sol) polarization free energy of solvation -67.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds