Wall clock time and date at job start Fri Apr 10 2020 20:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36203 * 117.00036 * 2 1 4 4 C 1.34080 * 122.50549 * 0.02986 * 3 2 1 5 5 S 1.70602 * 110.97927 * 180.02562 * 4 3 2 6 6 C 1.75815 * 91.61979 * 359.97438 * 5 4 3 7 7 C 1.46545 * 125.42690 * 179.97438 * 6 5 4 8 8 O 1.21705 * 120.00042 * 179.97438 * 7 6 5 9 9 N 1.34778 * 119.99563 * 359.97438 * 7 6 5 10 10 C 1.47020 * 125.65252 * 359.69205 * 9 7 6 11 11 C 1.54337 * 107.26749 * 178.85302 * 10 9 7 12 12 C 1.55163 * 103.01879 * 338.13641 * 11 10 9 13 13 O 1.42899 * 111.00275 * 277.23673 * 12 11 10 14 14 C 1.50698 * 111.00357 * 153.38426 * 12 11 10 15 15 H 1.07997 * 119.99862 * 6.34870 * 14 12 11 16 16 C 1.37876 * 119.99774 * 186.35418 * 14 12 11 17 17 N 1.31514 * 120.00338 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99710 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47462 * 89.99962 * 18 16 14 20 20 H 1.48506 * 109.47184 * 209.99431 * 18 16 14 21 21 H 1.48499 * 109.47385 * 329.99620 * 18 16 14 22 22 C 1.47431 * 125.64530 * 179.97438 * 9 7 6 23 23 C 1.36745 * 109.14532 * 359.74067 * 6 5 4 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99702 * 1 2 3 26 26 H 1.09004 * 109.46926 * 299.99823 * 1 2 3 27 27 H 1.08004 * 124.50988 * 359.97438 * 4 3 2 28 28 H 1.09007 * 109.87795 * 298.39176 * 10 9 7 29 29 H 1.08996 * 109.88411 * 59.55741 * 10 9 7 30 30 H 1.09000 * 110.84774 * 219.67308 * 11 10 9 31 31 H 1.08999 * 110.67269 * 96.51863 * 11 10 9 32 32 H 0.96701 * 113.99753 * 173.65099 * 13 12 11 33 33 H 0.96998 * 120.00244 * 180.02562 * 17 16 14 34 34 H 1.08993 * 110.36570 * 322.93422 * 22 9 7 35 35 H 1.09008 * 110.36190 * 85.14030 * 22 9 7 36 36 H 1.07997 * 123.36864 * 180.23606 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2136 0.0000 4 6 1.3670 2.3689 0.0006 5 16 2.4296 3.7036 -0.0003 6 6 3.8355 2.6478 -0.0007 7 6 5.2318 3.0925 -0.0021 8 8 6.1315 2.2729 -0.0018 9 7 5.5196 4.4092 -0.0036 10 6 4.5355 5.5014 -0.0106 11 6 5.3234 6.8282 0.0196 12 6 6.6970 6.4057 0.6048 13 8 6.6491 6.3454 2.0317 14 6 7.7900 7.3343 0.1419 15 1 7.5425 8.2184 -0.4268 16 6 9.1058 7.0549 0.4443 17 7 9.4071 5.9785 1.1372 18 14 10.4606 8.2056 -0.1301 19 1 10.7020 9.2422 0.9056 20 1 11.7071 7.4299 -0.3538 21 1 10.0501 8.8594 -1.3986 22 6 6.8735 4.9927 -0.0046 23 6 3.4183 1.3455 0.0057 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 0.2896 2.4445 0.0007 28 1 3.9295 5.4485 -0.9151 29 1 3.8975 5.4312 0.8703 30 1 4.8348 7.5548 0.6687 31 1 5.4401 7.2294 -0.9871 32 1 7.4530 5.9931 2.4376 33 1 10.3329 5.7822 1.3503 34 1 7.5447 4.3948 0.6119 35 1 7.2559 5.0622 -1.0230 36 1 4.0961 0.5047 0.0105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844016607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:29:12 Heat of formation + Delta-G solvation = -80.587305 kcal Electronic energy + Delta-G solvation = -21805.642349 eV Core-core repulsion = 18382.311012 eV Total energy + Delta-G solvation = -3423.331337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.95549 -39.35130 -37.33368 -35.66073 -34.34075 -32.26370 -30.47805 -29.42183 -28.07193 -27.78443 -25.58583 -23.96366 -22.51302 -20.67493 -19.71613 -18.90334 -17.91403 -17.16855 -17.13162 -16.01334 -15.94392 -15.39968 -15.18220 -14.86093 -14.56155 -14.23461 -13.41996 -13.19602 -13.04230 -12.99742 -12.80094 -12.72199 -12.07702 -11.80478 -11.78270 -11.55405 -11.12708 -11.08881 -11.02342 -10.73784 -10.53647 -10.49125 -10.23797 -9.61486 -9.41216 -8.89763 -8.72725 -8.42361 -8.04352 -7.86096 -6.30531 -4.40666 0.55924 1.51175 1.96440 2.45930 3.10326 3.19999 3.27766 3.29708 3.54615 3.62838 4.24753 4.76672 4.83568 4.94093 4.94262 5.02119 5.21974 5.25585 5.27596 5.51177 5.65779 5.75333 5.90350 5.93186 6.01547 6.18230 6.41549 6.64960 6.78526 6.88132 7.12728 7.19266 7.30045 7.71036 7.97149 8.06715 8.57332 8.63950 9.26091 9.34757 10.76633 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.039294 B = 0.003711 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.400873 B = 7543.327858 C = 7958.607934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.308 6.308 3 C 0.103 3.897 4 C -0.368 4.368 5 S 0.244 5.756 6 C -0.219 4.219 7 C 0.591 3.409 8 O -0.535 6.535 9 N -0.602 5.602 10 C 0.089 3.911 11 C -0.112 4.112 12 C 0.249 3.751 13 O -0.582 6.582 14 C -0.539 4.539 15 H 0.068 0.932 16 C 0.072 3.928 17 N -0.892 5.892 18 Si 0.904 3.096 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.096 3.904 23 C -0.081 4.081 24 H 0.098 0.902 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.165 0.835 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.382 0.618 33 H 0.271 0.729 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.558 -5.170 -2.612 17.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.223 6.223 3 C 0.046 3.954 4 C -0.506 4.506 5 S 0.511 5.489 6 C -0.341 4.341 7 C 0.378 3.622 8 O -0.415 6.415 9 N -0.334 5.334 10 C -0.035 4.035 11 C -0.150 4.150 12 C 0.208 3.792 13 O -0.391 6.391 14 C -0.577 4.577 15 H 0.086 0.914 16 C -0.132 4.132 17 N -0.530 5.530 18 Si 0.732 3.268 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.025 4.025 23 C -0.116 4.116 24 H 0.117 0.883 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.183 0.817 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.232 0.768 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -16.704 -4.157 -2.641 17.415 hybrid contribution 0.982 -1.239 -0.207 1.595 sum -15.722 -5.397 -2.848 16.865 Atomic orbital electron populations 1.22995 0.78569 1.03686 1.01150 1.86097 1.20990 1.25573 1.89615 1.17533 0.91500 0.84567 1.01800 1.25397 1.06059 0.99052 1.20049 1.83400 0.92214 1.05290 1.67968 1.24634 0.98017 0.97207 1.14193 1.16474 0.85948 0.81746 0.78047 1.90820 1.46755 1.52220 1.51695 1.48648 1.10675 1.03695 1.70343 1.22160 0.92008 0.88968 1.00391 1.22597 0.96710 0.94021 1.01640 1.19627 0.90703 0.89465 0.79370 1.86107 1.44184 1.87929 1.20841 1.21432 0.90781 1.09352 1.36129 0.91411 1.25083 0.99052 0.95088 0.93990 1.69709 1.19973 1.25072 1.38252 0.86394 0.80775 0.80483 0.79192 1.20385 1.21012 1.19685 1.23362 0.80383 0.97052 1.01687 1.19889 0.92740 0.96921 1.02036 0.88344 0.92922 0.92887 0.81699 0.91888 0.91388 0.90340 0.90039 0.76803 0.91918 0.89170 0.91701 0.82241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.93 101.05 1.00 1.25 16 2 O -0.31 -3.86 10.56 -20.39 -0.22 -4.07 16 3 C 0.10 1.40 6.61 -41.23 -0.27 1.13 16 4 C -0.37 -4.37 9.81 29.27 0.29 -4.08 16 5 S 0.24 3.14 18.42 -107.50 -1.98 1.16 16 6 C -0.22 -3.69 6.38 -36.78 -0.23 -3.92 16 7 C 0.59 12.25 7.81 -12.91 -0.10 12.15 16 8 O -0.54 -12.87 17.10 5.18 0.09 -12.78 16 9 N -0.60 -12.39 3.33 -172.11 -0.57 -12.96 16 10 C 0.09 1.53 5.17 -3.06 -0.02 1.51 16 11 C -0.11 -2.11 6.13 -24.89 -0.15 -2.26 16 12 C 0.25 5.83 0.87 -89.63 -0.08 5.75 16 13 O -0.58 -14.40 13.16 -35.23 -0.46 -14.87 16 14 C -0.54 -13.60 8.27 -34.44 -0.28 -13.89 16 15 H 0.07 1.67 7.79 -52.49 -0.41 1.26 16 16 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 17 N -0.89 -23.39 10.69 55.43 0.59 -22.79 16 18 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 19 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 C 0.10 2.26 5.38 -2.54 -0.01 2.25 16 23 C -0.08 -1.27 10.00 -40.31 -0.40 -1.68 16 24 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.36 7.84 -51.93 -0.41 -0.05 16 26 H 0.05 0.37 7.84 -51.93 -0.41 -0.04 16 27 H 0.17 1.49 6.96 -52.48 -0.37 1.13 16 28 H 0.06 0.91 7.01 -51.93 -0.36 0.55 16 29 H 0.07 1.10 6.80 -51.93 -0.35 0.74 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.08 1.43 8.03 -51.93 -0.42 1.02 16 32 H 0.38 9.75 7.57 45.56 0.34 10.09 16 33 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.09 2.39 7.33 -51.93 -0.38 2.01 16 35 H 0.06 1.57 8.03 -51.92 -0.42 1.15 16 36 H 0.16 2.49 8.06 -52.49 -0.42 2.07 16 LS Contribution 313.63 15.07 4.73 4.73 Total: -1.00 -29.54 313.63 -6.78 -36.33 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -3.58 Total: 10.35 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -0.36 Total: -0.05 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.02 Total: -35.76 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -0.59 Total: -31.72 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -1.98 Total: 1.16 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.54 -6.78 -36.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.262 kcal (2) G-P(sol) polarization free energy of solvation -29.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds